Wall clock time and date at job start Tue Mar 9 2021 14:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86300 * 109.47089 * 2 1 4 4 C 1.50705 * 109.47487 * 120.00086 * 2 1 3 5 5 C 1.38189 * 119.83972 * 254.98495 * 4 2 1 6 6 C 1.38309 * 120.14169 * 179.69825 * 5 4 2 7 7 F 1.35105 * 120.08674 * 180.29528 * 6 5 4 8 8 C 1.39816 * 119.83284 * 0.59251 * 6 5 4 9 9 C 1.47688 * 120.15666 * 179.70432 * 8 6 5 10 10 O 1.21578 * 119.99864 * 359.72335 * 9 8 6 11 11 N 1.34772 * 120.00164 * 179.72744 * 9 8 6 12 12 C 1.46506 * 120.00033 * 179.97438 * 11 9 8 13 13 H 1.08992 * 112.90684 * 336.24748 * 12 11 9 14 14 C 1.54049 * 113.61276 * 107.61836 * 12 11 9 15 15 C 1.53781 * 87.08031 * 89.07129 * 14 12 11 16 16 H 1.08999 * 113.61181 * 270.87794 * 15 14 12 17 17 C 1.50696 * 113.69134 * 139.98880 * 15 14 12 18 18 C 1.38221 * 119.99540 * 142.46687 * 17 15 14 19 19 C 1.38263 * 120.01973 * 180.02562 * 18 17 15 20 20 C 1.38195 * 120.00943 * 359.97438 * 19 18 17 21 21 C 1.38344 * 119.99099 * 359.97438 * 20 19 18 22 22 Br 1.89107 * 120.01008 * 180.02562 * 21 20 19 23 23 C 1.38235 * 119.99550 * 322.18478 * 17 15 14 24 24 C 1.53781 * 87.08070 * 25.42738 * 15 14 12 25 25 C 1.39655 * 119.68447 * 359.42923 * 8 6 5 26 26 C 1.38066 * 119.85675 * 0.27040 * 25 8 6 27 27 F 1.35095 * 119.91868 * 179.97438 * 26 25 8 28 28 H 0.96691 * 113.99821 * 299.99347 * 1 2 3 29 29 H 1.09000 * 109.47652 * 240.00103 * 2 1 3 30 30 H 1.48504 * 110.00036 * 300.00223 * 3 2 1 31 31 H 1.48500 * 109.99839 * 61.31754 * 3 2 1 32 32 H 1.07997 * 119.92719 * 0.02562 * 5 4 2 33 33 H 0.97002 * 120.00078 * 359.97438 * 11 9 8 34 34 H 1.09005 * 113.62125 * 334.52173 * 14 12 11 35 35 H 1.08996 * 113.68970 * 203.62749 * 14 12 11 36 36 H 1.07998 * 119.98773 * 359.97104 * 18 17 15 37 37 H 1.07996 * 119.99345 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.00447 * 179.97438 * 20 19 18 39 39 H 1.08004 * 120.00456 * 0.02938 * 23 17 15 40 40 H 1.09002 * 113.61445 * 89.11830 * 24 15 14 41 41 H 1.09002 * 113.61408 * 219.93560 * 24 15 14 42 42 H 1.08000 * 120.07154 * 180.30142 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.4535 0.0198 2.2811 6 6 2.9106 -0.6253 3.4159 7 9 3.4153 0.0901 4.4448 8 6 2.8549 -2.0203 3.4930 9 6 3.3471 -2.7169 4.6986 10 8 3.8067 -2.0776 5.6250 11 7 3.2869 -4.0613 4.7719 12 6 3.7757 -4.7524 5.9677 13 1 4.5098 -4.1698 6.5241 14 6 2.6522 -5.3344 6.8465 15 6 2.7581 -6.6126 5.9981 16 1 2.1168 -6.6060 5.1168 17 6 2.6382 -7.8830 6.7997 18 6 1.9652 -8.9703 6.2749 19 6 1.8544 -10.1360 7.0101 20 6 2.4170 -10.2147 8.2699 21 6 3.0916 -9.1271 8.7952 22 35 3.8622 -9.2344 10.5187 23 6 3.2063 -7.9629 8.0574 24 6 4.2114 -6.2037 5.7054 25 6 2.3263 -2.7513 2.4269 26 6 1.8679 -2.0936 1.3028 27 9 1.3568 -2.7996 0.2706 28 1 -0.3933 0.4416 0.7650 29 1 1.7924 -0.5138 -0.8900 30 1 1.5614 2.4679 -1.2085 31 1 1.5878 2.4585 1.2242 32 1 2.4997 1.0970 2.2181 33 1 2.9199 -4.5713 4.0329 34 1 1.6996 -4.8158 6.7378 35 1 2.9402 -5.4766 7.8881 36 1 1.5250 -8.9089 5.2906 37 1 1.3281 -10.9851 6.5998 38 1 2.3300 -11.1252 8.8443 39 1 3.7356 -7.1146 8.4658 40 1 4.9271 -6.5832 6.4347 41 1 4.5180 -6.3883 4.6759 42 1 2.2758 -3.8287 2.4818 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_12360598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:47:12 Heat of formation + Delta-G solvation = -58.953220 kcal Electronic energy + Delta-G solvation = -30974.198139 eV Core-core repulsion = 26183.356408 eV Total energy + Delta-G solvation = -4790.841731 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 424.027 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.11131 -50.08983 -41.81063 -40.85657 -39.94743 -38.83193 -37.76285 -34.97677 -33.48119 -33.09927 -31.69006 -31.38050 -30.23959 -28.00897 -26.72224 -26.23545 -24.41226 -24.13411 -23.38390 -22.48608 -22.03597 -20.27926 -19.72826 -18.86776 -18.54389 -18.14157 -17.88332 -17.35647 -17.11464 -16.82855 -16.58907 -16.43209 -16.21915 -16.18432 -15.97486 -15.85230 -15.64189 -15.33664 -15.12157 -14.88302 -14.60020 -14.46574 -14.25842 -14.14018 -13.82143 -13.53132 -13.45457 -13.17885 -13.00369 -12.91997 -12.42832 -12.35238 -12.03521 -11.93396 -11.90229 -11.55448 -11.33794 -11.27054 -11.20931 -10.78734 -10.60949 -10.21253 -9.84618 -9.81518 -9.61645 -4.96190 -0.82026 -0.30902 0.11069 0.27212 0.64138 1.15763 1.37041 1.53876 1.79613 1.91290 2.22563 2.57974 2.78565 2.84226 3.10292 3.24296 3.40426 3.45174 3.50331 3.61673 3.66822 3.78371 3.83867 3.93640 4.05706 4.16128 4.23458 4.29086 4.31913 4.38258 4.42070 4.51352 4.58860 4.67133 4.69093 4.73271 4.74904 4.82277 4.93961 4.96755 5.00336 5.09773 5.21979 5.35198 5.38102 5.45944 5.59247 5.85208 6.29804 6.38517 6.98298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.086 4.086 3 Si 0.771 3.229 4 C -0.090 4.090 5 C -0.131 4.131 6 C 0.140 3.860 7 F -0.125 7.125 8 C -0.147 4.147 9 C 0.560 3.440 10 O -0.560 6.560 11 N -0.688 5.688 12 C 0.115 3.885 13 H 0.088 0.912 14 C -0.145 4.145 15 C -0.064 4.064 16 H 0.123 0.877 17 C -0.068 4.068 18 C -0.102 4.102 19 C -0.115 4.115 20 C -0.109 4.109 21 C -0.103 4.103 22 Br -0.064 7.064 23 C -0.098 4.098 24 C -0.124 4.124 25 C -0.075 4.075 26 C 0.105 3.895 27 F -0.127 7.127 28 H 0.390 0.610 29 H 0.134 0.866 30 H -0.294 1.294 31 H -0.271 1.271 32 H 0.170 0.830 33 H 0.417 0.583 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.298 -3.043 -5.320 6.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.195 4.195 3 Si 0.674 3.326 4 C -0.092 4.092 5 C -0.149 4.149 6 C 0.119 3.881 7 F -0.103 7.103 8 C -0.151 4.151 9 C 0.348 3.652 10 O -0.439 6.439 11 N -0.340 5.340 12 C 0.010 3.990 13 H 0.106 0.894 14 C -0.184 4.184 15 C -0.082 4.082 16 H 0.141 0.859 17 C -0.069 4.069 18 C -0.120 4.120 19 C -0.133 4.133 20 C -0.128 4.128 21 C -0.182 4.182 22 Br 0.022 6.978 23 C -0.118 4.118 24 C -0.162 4.162 25 C -0.094 4.094 26 C 0.085 3.915 27 F -0.105 7.105 28 H 0.240 0.760 29 H 0.151 0.849 30 H -0.222 1.222 31 H -0.198 1.198 32 H 0.187 0.813 33 H 0.256 0.744 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.205 -2.145 -4.540 5.026 hybrid contribution -1.390 -0.344 0.295 1.462 sum -1.185 -2.489 -4.245 5.062 Atomic orbital electron populations 1.86654 1.17483 1.80397 1.50265 1.25287 0.84164 1.12530 0.97473 0.93849 0.90125 0.71245 0.77344 1.20443 0.98791 0.92665 0.97297 1.21097 1.00332 1.02368 0.91112 1.17814 0.96268 0.88484 0.85548 1.91607 1.84098 1.77617 1.56994 1.19794 1.06446 0.92309 0.96556 1.18060 0.78257 0.82976 0.85933 1.90881 1.46443 1.66804 1.39774 1.45388 1.63049 1.05193 1.20409 1.21934 0.97011 0.93514 0.86578 0.89351 1.23613 0.99466 0.95869 0.99413 1.21652 0.98308 0.89771 0.98471 0.85897 1.19843 0.97202 0.96143 0.93725 1.21548 0.97370 0.92144 1.00902 1.21490 0.99012 0.99279 0.93546 1.21350 0.96999 0.97649 0.96850 1.21941 1.04738 0.98387 0.93176 1.96764 1.82329 1.98850 1.19894 1.21092 0.99748 0.96426 0.94545 1.23381 0.96101 0.92344 1.04371 1.21348 0.95825 1.02409 0.89857 1.17333 0.99139 0.88983 0.86032 1.91575 1.84416 1.78142 1.56379 0.76036 0.84876 1.22166 1.19767 0.81270 0.74396 0.91031 0.88953 0.82945 0.83103 0.84637 0.84769 0.88390 0.88615 0.80000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.44 12.88 -148.98 -1.92 -1.48 16 2 C -0.09 0.36 2.44 71.24 0.17 0.53 16 3 Si 0.77 -4.16 30.23 68.60 2.07 -2.09 16 4 C -0.09 0.35 5.27 -19.77 -0.10 0.25 16 5 C -0.13 0.42 8.62 22.28 0.19 0.61 16 6 C 0.14 0.24 7.28 22.67 0.17 0.41 16 7 F -0.12 -1.01 15.55 44.97 0.70 -0.31 16 8 C -0.15 0.09 5.88 -20.06 -0.12 -0.03 16 9 C 0.56 1.60 7.77 86.74 0.67 2.27 16 10 O -0.56 -7.00 14.94 -3.96 -0.06 -7.06 16 11 N -0.69 3.17 5.22 -442.61 -2.31 0.86 16 12 C 0.11 -0.39 4.34 45.61 0.20 -0.20 16 13 H 0.09 0.15 7.46 -2.39 -0.02 0.13 16 14 C -0.15 0.58 7.27 31.21 0.23 0.81 16 15 C -0.06 0.48 3.85 -11.01 -0.04 0.44 16 16 H 0.12 -1.44 8.09 -2.39 -0.02 -1.46 16 17 C -0.07 0.25 5.29 -19.87 -0.11 0.15 16 18 C -0.10 0.49 9.71 22.27 0.22 0.71 16 19 C -0.11 0.38 10.05 22.27 0.22 0.61 16 20 C -0.11 0.00 9.79 22.28 0.22 0.22 16 21 C -0.10 -0.19 6.22 22.31 0.14 -0.05 16 22 Br -0.06 -0.22 33.70 -20.37 -0.69 -0.90 16 23 C -0.10 0.04 8.34 22.28 0.19 0.23 16 24 C -0.12 0.93 7.28 31.12 0.23 1.16 16 25 C -0.08 0.46 9.51 22.57 0.21 0.68 16 26 C 0.10 -0.37 7.23 22.33 0.16 -0.21 16 27 F -0.13 0.11 16.73 44.97 0.75 0.86 16 28 H 0.39 -2.74 8.70 -74.06 -0.64 -3.38 16 29 H 0.13 -0.71 7.89 -2.39 -0.02 -0.73 16 30 H -0.29 -0.70 7.11 99.48 0.71 0.01 16 31 H -0.27 0.69 6.68 99.48 0.66 1.35 16 32 H 0.17 -1.02 4.83 -2.91 -0.01 -1.03 16 33 H 0.42 -4.86 6.73 -92.71 -0.62 -5.49 16 34 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 35 H 0.09 -0.26 6.33 -2.39 -0.02 -0.28 16 36 H 0.15 -1.52 8.05 -2.91 -0.02 -1.54 16 37 H 0.15 -1.15 8.06 -2.91 -0.02 -1.17 16 38 H 0.14 -0.22 8.06 -2.91 -0.02 -0.24 16 39 H 0.13 -0.19 6.68 -2.91 -0.02 -0.21 16 40 H 0.10 -0.61 7.71 -2.39 -0.02 -0.63 16 41 H 0.10 -0.97 8.14 -2.39 -0.02 -0.99 16 42 H 0.18 -2.43 6.41 -2.91 -0.02 -2.45 16 Total: 0.00 -21.11 380.48 1.25 -19.86 By element: Atomic # 1 Polarization: -18.17 SS G_CDS: -0.15 Total: -18.32 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 2.85 Total: 8.58 kcal Atomic # 7 Polarization: 3.17 SS G_CDS: -2.31 Total: 0.86 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -1.98 Total: -8.54 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 1.45 Total: 0.55 kcal Atomic # 14 Polarization: -4.16 SS G_CDS: 2.07 Total: -2.09 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -0.69 Total: -0.90 kcal Total: -21.11 1.25 -19.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_12360598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.098 kcal (2) G-P(sol) polarization free energy of solvation -21.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds