Wall clock time and date at job start Tue Mar 9 2021 14:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86299 * 109.46987 * 2 1 4 4 C 1.50705 * 109.47228 * 240.00446 * 2 1 3 5 5 C 1.31109 * 118.55012 * 109.54817 * 4 2 1 6 6 N 1.38924 * 121.85086 * 179.61461 * 5 4 2 7 7 C 1.47033 * 118.88185 * 13.29438 * 6 5 4 8 8 C 1.53496 * 107.50130 * 316.25336 * 7 6 5 9 9 C 1.50201 * 118.54134 * 289.52546 * 4 2 1 10 10 C 1.50704 * 109.33339 * 320.31190 * 9 4 2 11 11 O 1.21287 * 119.99918 * 277.72603 * 10 9 4 12 12 N 1.34776 * 120.00231 * 97.72264 * 10 9 4 13 13 C 1.46500 * 120.00008 * 174.99594 * 12 10 9 14 14 H 1.08994 * 112.90792 * 336.24805 * 13 12 10 15 15 C 1.54051 * 113.61309 * 107.62036 * 13 12 10 16 16 C 1.53785 * 87.07761 * 89.06721 * 15 13 12 17 17 H 1.08994 * 113.69131 * 270.86705 * 16 15 13 18 18 C 1.50700 * 113.60915 * 139.97407 * 16 15 13 19 19 C 1.38222 * 119.99087 * 142.50460 * 18 16 15 20 20 C 1.38262 * 120.01859 * 179.97438 * 19 18 16 21 21 C 1.38200 * 120.01227 * 0.04458 * 20 19 18 22 22 C 1.38347 * 119.98918 * 359.97438 * 21 20 19 23 23 Br 1.89098 * 120.01115 * 179.97438 * 22 21 20 24 24 C 1.38242 * 119.99904 * 322.22869 * 18 16 15 25 25 C 1.53781 * 113.61116 * 205.00202 * 13 12 10 26 26 H 0.96693 * 113.99843 * 299.99931 * 1 2 3 27 27 H 1.08996 * 109.47549 * 119.99960 * 2 1 3 28 28 H 1.48506 * 110.00196 * 178.67891 * 3 2 1 29 29 H 1.48502 * 110.00419 * 300.00264 * 3 2 1 30 30 H 1.08009 * 119.07373 * 359.59500 * 5 4 2 31 31 H 0.96995 * 120.55816 * 193.27139 * 6 5 4 32 32 H 1.08999 * 109.82111 * 75.87323 * 7 6 5 33 33 H 1.08995 * 109.81992 * 196.73597 * 7 6 5 34 34 H 1.09000 * 109.75222 * 301.39763 * 8 7 6 35 35 H 1.09001 * 109.46157 * 180.86256 * 8 7 6 36 36 H 1.09003 * 109.33384 * 79.96453 * 9 4 2 37 37 H 0.97001 * 119.99593 * 354.99059 * 12 10 9 38 38 H 1.08999 * 113.61945 * 334.52512 * 15 13 12 39 39 H 1.08998 * 113.68994 * 203.63039 * 15 13 12 40 40 H 1.07994 * 119.99120 * 359.97438 * 19 18 16 41 41 H 1.07996 * 119.99498 * 180.02562 * 20 19 18 42 42 H 1.07998 * 120.00554 * 179.97438 * 21 20 19 43 43 H 1.08003 * 120.00154 * 0.02562 * 24 18 16 44 44 H 1.08998 * 113.61297 * 156.33628 * 25 13 12 45 45 H 1.08999 * 113.61982 * 25.51160 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 2.5036 -0.0015 -2.1735 6 7 2.9982 -0.5865 -3.3324 7 6 2.6217 -1.9732 -3.6445 8 6 2.7303 -2.7843 -2.3459 9 6 1.7548 -2.1991 -1.3221 10 6 2.0179 -2.8167 0.0271 11 8 3.1565 -3.0415 0.3796 12 7 0.9881 -3.1191 0.8423 13 6 1.2348 -3.8187 2.1056 14 1 2.1619 -4.3918 2.0991 15 6 1.0682 -2.9245 3.3489 16 6 -0.4139 -3.3347 3.3482 17 1 -1.0485 -2.6827 2.7479 18 6 -0.9709 -3.5872 4.7255 19 6 -2.2658 -3.2092 5.0271 20 6 -2.7776 -3.4411 6.2904 21 6 -1.9943 -4.0501 7.2525 22 6 -0.6981 -4.4282 6.9512 23 35 0.3744 -5.2608 8.2673 24 6 -0.1887 -4.2019 5.6854 25 6 0.0221 -4.6148 2.6158 26 1 -0.3933 0.4417 0.7650 27 1 1.7924 -0.5138 0.8899 28 1 3.5346 1.7704 0.0322 29 1 1.5614 2.4680 -1.2084 30 1 2.5926 1.0673 -2.0458 31 1 3.5818 -0.0885 -3.9259 32 1 1.5980 -2.0032 -4.0176 33 1 3.3002 -2.3806 -4.3939 34 1 3.7473 -2.7247 -1.9583 35 1 2.4719 -3.8245 -2.5448 36 1 0.7330 -2.4232 -1.6283 37 1 0.0836 -2.8734 0.5924 38 1 1.2280 -1.8649 3.1493 39 1 1.6190 -3.2788 4.2201 40 1 -2.8779 -2.7327 4.2758 41 1 -3.7895 -3.1461 6.5255 42 1 -2.3941 -4.2308 8.2394 43 1 0.8217 -4.5008 5.4483 44 1 0.2872 -5.4325 3.2860 45 1 -0.6635 -4.9205 1.8255 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_15608500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:49:41 Heat of formation + Delta-G solvation = 14.359450 kcal Electronic energy + Delta-G solvation = -28497.872059 eV Core-core repulsion = 24529.068487 eV Total energy + Delta-G solvation = -3968.803572 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.073 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.80318 -40.89851 -39.56006 -38.56836 -37.44234 -34.63439 -33.57152 -33.19033 -32.97133 -31.66324 -30.20932 -27.50429 -26.68906 -26.43149 -25.59024 -23.52272 -23.20071 -22.47443 -21.95605 -20.11932 -19.17336 -18.88261 -18.47288 -18.08589 -17.72007 -16.97712 -16.85307 -16.41855 -16.11284 -15.62487 -15.44347 -15.16584 -15.09993 -14.75024 -14.66780 -14.56369 -14.41300 -14.25984 -14.08730 -13.75465 -13.67201 -13.44386 -13.35539 -12.93863 -12.84952 -12.37116 -12.32536 -12.01979 -11.98437 -11.85059 -11.68178 -11.50632 -11.49986 -11.29882 -11.16087 -10.80658 -10.17206 -10.02903 -9.79710 -9.58017 -8.59497 -4.97153 0.14674 0.30773 0.66713 1.10064 1.31465 1.57909 1.62782 1.91943 2.19709 2.49712 2.61769 3.48178 3.48693 3.57122 3.66922 3.70728 3.78517 3.88113 3.95370 3.99318 4.08375 4.09832 4.22328 4.27470 4.29156 4.33644 4.45671 4.48886 4.55396 4.61477 4.68349 4.70847 4.75384 4.77986 4.88776 4.99192 5.02403 5.04826 5.07644 5.16774 5.18897 5.26601 5.31918 5.41402 5.55512 5.68066 5.89044 6.16432 6.55768 6.76308 6.99026 7.25973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.048 4.048 3 Si 0.750 3.250 4 C -0.244 4.244 5 C 0.134 3.866 6 N -0.750 5.750 7 C 0.124 3.876 8 C -0.128 4.128 9 C -0.033 4.033 10 C 0.531 3.469 11 O -0.583 6.583 12 N -0.694 5.694 13 C 0.114 3.886 14 H 0.078 0.922 15 C -0.143 4.143 16 C -0.059 4.059 17 H 0.123 0.877 18 C -0.066 4.066 19 C -0.100 4.100 20 C -0.114 4.114 21 C -0.109 4.109 22 C -0.103 4.103 23 Br -0.065 7.065 24 C -0.099 4.099 25 C -0.127 4.127 26 H 0.395 0.605 27 H 0.058 0.942 28 H -0.305 1.305 29 H -0.282 1.282 30 H 0.121 0.879 31 H 0.410 0.590 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.416 0.584 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.094 0.906 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.357 2.252 -1.999 7.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.160 4.160 3 Si 0.657 3.343 4 C -0.255 4.255 5 C 0.012 3.988 6 N -0.380 5.380 7 C 0.000 4.000 8 C -0.167 4.167 9 C -0.054 4.054 10 C 0.319 3.681 11 O -0.462 6.462 12 N -0.345 5.345 13 C 0.008 3.992 14 H 0.096 0.904 15 C -0.181 4.181 16 C -0.077 4.077 17 H 0.141 0.859 18 C -0.067 4.067 19 C -0.118 4.118 20 C -0.133 4.133 21 C -0.129 4.129 22 C -0.183 4.183 23 Br 0.020 6.980 24 C -0.119 4.119 25 C -0.165 4.165 26 H 0.245 0.755 27 H 0.076 0.924 28 H -0.233 1.233 29 H -0.209 1.209 30 H 0.138 0.862 31 H 0.246 0.754 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.254 0.746 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.171 0.829 41 H 0.170 0.830 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.112 0.888 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.651 1.890 -2.252 5.502 hybrid contribution 0.171 -0.078 -0.417 0.458 sum -4.480 1.811 -2.669 5.520 Atomic orbital electron populations 1.86440 1.16845 1.82027 1.50751 1.24387 0.85973 1.08976 0.96631 0.94587 0.77288 0.77134 0.85257 1.19829 1.14239 0.93752 0.97696 1.20375 0.95093 0.95741 0.87596 1.44622 1.54877 1.14914 1.23632 1.21718 1.01732 0.80457 0.96131 1.21825 0.99276 1.00260 0.95345 1.19671 1.01795 0.92053 0.91920 1.20726 0.84470 0.76389 0.86520 1.90685 1.23716 1.55138 1.76695 1.45623 1.10533 1.58583 1.19759 1.21866 0.99356 0.94488 0.83469 0.90357 1.23574 0.95898 1.00830 0.97806 1.21592 0.95862 0.98235 0.92003 0.85873 1.19845 0.94119 0.97465 0.95286 1.21547 0.94851 0.98161 0.97221 1.21494 1.00859 0.97905 0.92994 1.21345 0.92158 0.98280 1.01072 1.21931 0.96203 1.05521 0.94597 1.96757 1.68575 1.79605 1.53027 1.21080 1.00640 0.98878 0.91312 1.23367 0.96351 0.96679 1.00088 0.75466 0.92376 1.23335 1.20935 0.86186 0.75402 0.90957 0.87854 0.92372 0.89121 0.87652 0.74600 0.90694 0.89360 0.82862 0.83026 0.84637 0.85028 0.88786 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.07 12.86 -148.98 -1.92 0.16 16 2 C -0.05 -0.02 2.41 71.24 0.17 0.15 16 3 Si 0.75 -0.22 29.94 68.60 2.05 1.83 16 4 C -0.24 -1.06 5.06 -16.75 -0.08 -1.14 16 5 C 0.13 0.60 9.61 83.42 0.80 1.40 16 6 N -0.75 -0.62 5.83 -345.97 -2.02 -2.64 16 7 C 0.12 -0.23 7.16 86.44 0.62 0.39 16 8 C -0.13 -0.27 5.32 30.77 0.16 -0.11 16 9 C -0.03 -0.09 2.70 -12.43 -0.03 -0.13 16 10 C 0.53 2.99 5.23 87.66 0.46 3.45 16 11 O -0.58 -8.62 15.79 -3.05 -0.05 -8.67 16 12 N -0.69 0.75 5.26 -439.60 -2.31 -1.56 16 13 C 0.11 -0.10 4.31 45.61 0.20 0.10 16 14 H 0.08 0.36 7.53 -2.39 -0.02 0.35 16 15 C -0.14 0.38 7.26 31.21 0.23 0.61 16 16 C -0.06 0.36 3.86 -11.01 -0.04 0.32 16 17 H 0.12 -1.22 8.09 -2.39 -0.02 -1.23 16 18 C -0.07 0.20 5.29 -19.87 -0.11 0.10 16 19 C -0.10 0.46 9.71 22.27 0.22 0.67 16 20 C -0.11 0.37 10.05 22.27 0.22 0.60 16 21 C -0.11 -0.02 9.79 22.29 0.22 0.20 16 22 C -0.10 -0.24 6.22 22.31 0.14 -0.10 16 23 Br -0.06 -0.25 33.70 -20.37 -0.69 -0.93 16 24 C -0.10 -0.03 8.34 22.29 0.19 0.15 16 25 C -0.13 0.64 7.28 31.12 0.23 0.86 16 26 H 0.40 -5.09 8.74 -74.06 -0.65 -5.74 16 27 H 0.06 0.08 6.85 -2.39 -0.02 0.06 16 28 H -0.31 -2.36 7.11 99.48 0.71 -1.65 16 29 H -0.28 -1.27 6.86 99.48 0.68 -0.59 16 30 H 0.12 0.52 4.34 -2.91 -0.01 0.50 16 31 H 0.41 -1.19 8.96 -92.71 -0.83 -2.02 16 32 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 34 H 0.06 0.47 7.52 -2.39 -0.02 0.46 16 35 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.11 -0.06 8.10 -2.39 -0.02 -0.08 16 37 H 0.42 -2.40 8.67 -92.71 -0.80 -3.20 16 38 H 0.07 -0.16 8.14 -2.39 -0.02 -0.17 16 39 H 0.09 -0.13 6.32 -2.39 -0.02 -0.14 16 40 H 0.15 -1.49 8.05 -2.91 -0.02 -1.51 16 41 H 0.15 -1.16 8.06 -2.91 -0.02 -1.19 16 42 H 0.14 -0.20 8.06 -2.91 -0.02 -0.23 16 43 H 0.13 -0.03 6.68 -2.91 -0.02 -0.05 16 44 H 0.09 -0.37 7.71 -2.39 -0.02 -0.38 16 45 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 Total: 0.00 -20.10 381.33 -2.56 -22.66 By element: Atomic # 1 Polarization: -17.17 SS G_CDS: -1.22 Total: -18.39 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 3.58 Total: 7.53 kcal Atomic # 7 Polarization: 0.13 SS G_CDS: -4.33 Total: -4.19 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -1.96 Total: -8.51 kcal Atomic # 14 Polarization: -0.22 SS G_CDS: 2.05 Total: 1.83 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -0.69 Total: -0.93 kcal Total: -20.10 -2.56 -22.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_15608500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.022 kcal (2) G-P(sol) polarization free energy of solvation -20.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds