Wall clock time and date at job start Tue Mar 9 2021 14:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86306 * 109.46894 * 2 1 4 4 C 1.50699 * 109.47322 * 239.99991 * 2 1 3 5 5 C 1.38241 * 119.97372 * 120.01934 * 4 2 1 6 6 C 1.38280 * 120.11388 * 180.02562 * 5 4 2 7 7 C 1.38126 * 120.05326 * 359.67792 * 6 5 4 8 8 C 1.38753 * 119.94468 * 0.59597 * 7 6 5 9 9 O 1.35894 * 120.05560 * 179.69740 * 8 7 6 10 10 C 1.42900 * 117.00502 * 359.72789 * 9 8 7 11 11 C 1.52997 * 109.47254 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.46965 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47300 * 180.02562 * 12 11 10 14 14 O 1.21284 * 120.00109 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00137 * 179.97438 * 13 12 11 16 16 C 1.46506 * 119.99873 * 179.97438 * 15 13 12 17 17 H 1.09001 * 112.84609 * 25.34032 * 16 15 13 18 18 C 1.53781 * 113.61030 * 156.53323 * 16 15 13 19 19 C 1.53775 * 87.08199 * 89.11750 * 18 16 15 20 20 H 1.08998 * 113.61300 * 270.79642 * 19 18 16 21 21 C 1.50699 * 113.61641 * 139.97860 * 19 18 16 22 22 C 1.38219 * 119.99551 * 119.99785 * 21 19 18 23 23 C 1.38268 * 120.02218 * 180.02562 * 22 21 19 24 24 C 1.38197 * 120.00645 * 0.02562 * 23 22 21 25 25 C 1.38343 * 119.99021 * 359.97438 * 24 23 22 26 26 Br 1.89107 * 120.00697 * 180.02562 * 25 24 23 27 27 C 1.38242 * 119.99487 * 299.72737 * 21 19 18 28 28 C 1.53778 * 113.61561 * 254.13831 * 16 15 13 29 29 C 1.38167 * 119.96871 * 299.99895 * 4 2 1 30 30 H 0.96698 * 113.99972 * 59.99826 * 1 2 3 31 31 H 1.08997 * 109.46833 * 119.99583 * 2 1 3 32 32 H 1.48500 * 109.99734 * 298.68052 * 3 2 1 33 33 H 1.48496 * 109.99887 * 59.99785 * 3 2 1 34 34 H 1.08000 * 119.94173 * 359.97438 * 5 4 2 35 35 H 1.08003 * 119.97637 * 179.97438 * 6 5 4 36 36 H 1.08000 * 120.03054 * 180.32370 * 7 6 5 37 37 H 1.09004 * 109.46715 * 59.99940 * 10 9 8 38 38 H 1.09004 * 109.46985 * 300.00515 * 10 9 8 39 39 H 1.09000 * 109.47058 * 60.00987 * 11 10 9 40 40 H 1.08987 * 109.47609 * 300.00170 * 11 10 9 41 41 H 1.09004 * 109.46930 * 60.00393 * 12 11 10 42 42 H 1.09000 * 109.47312 * 300.00337 * 12 11 10 43 43 H 0.96995 * 120.00018 * 0.27749 * 15 13 12 44 44 H 1.09007 * 113.61020 * 203.66504 * 18 16 15 45 45 H 1.08998 * 113.61815 * 334.48247 * 18 16 15 46 46 H 1.08002 * 119.99294 * 359.97438 * 22 21 19 47 47 H 1.07991 * 119.99434 * 179.97438 * 23 22 21 48 48 H 1.08005 * 120.00355 * 180.02562 * 24 23 22 49 49 H 1.07999 * 120.00355 * 0.02562 * 27 21 19 50 50 H 1.09000 * 113.61266 * 25.43594 * 28 16 15 51 51 H 1.08994 * 113.61649 * 156.33709 * 28 16 15 52 52 H 1.07997 * 120.03172 * 0.04475 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7265 -0.0381 -2.1398 6 6 3.1887 -0.6870 -3.2701 7 6 2.8622 -2.0110 -3.4898 8 6 2.0596 -2.6864 -2.5815 9 8 1.7320 -3.9873 -2.7985 10 6 2.2438 -4.5959 -3.9858 11 6 1.7733 -6.0500 -4.0570 12 6 2.3219 -6.7018 -5.3279 13 6 1.8580 -8.1339 -5.3984 14 8 1.1572 -8.5884 -4.5190 15 7 2.2211 -8.9094 -6.4392 16 6 1.7705 -10.3018 -6.5075 17 1 0.8458 -10.4748 -5.9570 18 6 1.7544 -10.8747 -7.9345 19 6 3.2120 -11.3022 -7.6949 20 1 3.9413 -10.5404 -7.9701 21 6 3.5433 -12.6601 -8.2584 22 6 4.5332 -12.7888 -9.2144 23 6 4.8372 -14.0343 -9.7321 24 6 4.1509 -15.1510 -9.2943 25 6 3.1600 -15.0227 -8.3375 26 35 2.2210 -16.5506 -7.7376 27 6 2.8608 -13.7776 -7.8151 28 6 2.8759 -11.3231 -6.1917 29 6 1.5973 -2.0332 -1.4484 30 1 -0.3933 0.4417 -0.7650 31 1 1.7923 -0.5138 0.8900 32 1 1.5878 2.4585 -1.2243 33 1 1.5614 2.4679 1.2084 34 1 2.9865 0.9959 -1.9676 35 1 3.8093 -0.1596 -3.9793 36 1 3.2276 -2.5190 -4.3700 37 1 3.3333 -4.5673 -3.9680 38 1 1.8803 -4.0528 -4.8582 39 1 0.6839 -6.0789 -4.0747 40 1 2.1371 -6.5928 -3.1847 41 1 3.4114 -6.6729 -5.3098 42 1 1.9584 -6.1592 -6.2005 43 1 2.7842 -8.5469 -7.1409 44 1 1.0688 -11.7126 -8.0608 45 1 1.6423 -10.1156 -8.7086 46 1 5.0690 -11.9161 -9.5577 47 1 5.6105 -14.1343 -10.4793 48 1 4.3887 -16.1240 -9.6985 49 1 2.0900 -13.6774 -7.0652 50 1 3.6701 -10.9255 -5.5597 51 1 2.4964 -12.2833 -5.8424 52 1 0.9758 -2.5579 -0.7379 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14189268_4549616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:50:12 Heat of formation + Delta-G solvation = -27.148806 kcal Electronic energy + Delta-G solvation = -32428.553866 eV Core-core repulsion = 27792.704180 eV Total energy + Delta-G solvation = -4635.849686 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 446.093 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.63774 -41.25651 -40.44801 -39.25303 -38.84655 -37.41609 -34.90716 -34.59625 -33.31272 -32.46018 -31.85528 -31.17381 -30.25353 -28.44594 -26.88390 -26.73112 -26.10063 -23.92535 -23.64776 -23.29628 -22.43015 -21.89336 -21.45009 -20.13722 -19.23173 -18.41736 -17.91147 -17.86894 -17.45654 -17.17909 -17.00948 -16.82174 -16.44191 -16.42138 -16.19465 -16.07450 -15.52188 -15.24606 -15.21360 -14.86308 -14.73447 -14.55289 -14.45436 -14.31605 -14.16521 -14.09931 -13.53490 -13.46099 -13.31204 -13.21111 -13.08135 -12.88855 -12.72279 -12.37206 -12.31771 -12.27876 -12.02468 -11.94058 -11.89725 -11.59992 -11.55186 -11.55149 -11.33620 -11.20172 -10.97439 -10.68138 -10.10051 -9.91132 -9.84327 -9.62549 -9.23368 -4.90819 0.10092 0.22686 0.26139 0.42285 0.62864 1.29690 1.59868 1.62243 1.90035 1.98879 2.37610 2.57087 2.69024 3.39623 3.43123 3.59975 3.62749 3.66291 3.70306 3.83134 3.86144 3.89181 3.93971 3.98956 4.05138 4.12560 4.21343 4.22909 4.26555 4.28905 4.36016 4.41307 4.43177 4.45929 4.55833 4.57666 4.64073 4.68794 4.71702 4.73400 4.85772 4.94398 4.98097 4.99330 5.00319 5.02103 5.13264 5.17938 5.22372 5.30341 5.36656 5.40053 5.46574 5.50233 5.63102 5.76176 5.84586 6.44489 6.45964 6.54103 7.26143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.093 4.093 3 Si 0.783 3.217 4 C -0.082 4.082 5 C -0.160 4.160 6 C -0.072 4.072 7 C -0.205 4.205 8 C 0.116 3.884 9 O -0.340 6.340 10 C 0.058 3.942 11 C -0.103 4.103 12 C -0.126 4.126 13 C 0.510 3.490 14 O -0.590 6.590 15 N -0.699 5.699 16 C 0.114 3.886 17 H 0.077 0.923 18 C -0.125 4.125 19 C -0.060 4.060 20 H 0.125 0.875 21 C -0.069 4.069 22 C -0.101 4.101 23 C -0.114 4.114 24 C -0.109 4.109 25 C -0.104 4.104 26 Br -0.064 7.064 27 C -0.100 4.100 28 C -0.146 4.146 29 C -0.153 4.153 30 H 0.386 0.614 31 H 0.120 0.880 32 H -0.278 1.278 33 H -0.304 1.304 34 H 0.148 0.852 35 H 0.160 0.840 36 H 0.154 0.846 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.420 0.580 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.155 0.845 47 H 0.153 0.847 48 H 0.136 0.864 49 H 0.132 0.868 50 H 0.071 0.929 51 H 0.086 0.914 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.756 4.538 -9.054 13.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.201 4.201 3 Si 0.687 3.313 4 C -0.083 4.083 5 C -0.177 4.177 6 C -0.090 4.090 7 C -0.223 4.223 8 C 0.071 3.929 9 O -0.255 6.255 10 C -0.016 4.016 11 C -0.141 4.141 12 C -0.165 4.165 13 C 0.298 3.702 14 O -0.470 6.470 15 N -0.351 5.351 16 C 0.008 3.992 17 H 0.095 0.905 18 C -0.163 4.163 19 C -0.079 4.079 20 H 0.143 0.857 21 C -0.070 4.070 22 C -0.119 4.119 23 C -0.132 4.132 24 C -0.128 4.128 25 C -0.183 4.183 26 Br 0.021 6.979 27 C -0.120 4.120 28 C -0.185 4.185 29 C -0.172 4.172 30 H 0.235 0.765 31 H 0.138 0.862 32 H -0.204 1.204 33 H -0.233 1.233 34 H 0.165 0.835 35 H 0.177 0.823 36 H 0.172 0.828 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.258 0.742 44 H 0.110 0.890 45 H 0.113 0.887 46 H 0.172 0.828 47 H 0.170 0.830 48 H 0.154 0.846 49 H 0.149 0.851 50 H 0.089 0.911 51 H 0.104 0.896 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.659 3.997 -7.565 11.483 hybrid contribution -1.120 -0.476 -0.537 1.330 sum 6.539 3.521 -8.103 10.991 Atomic orbital electron populations 1.86575 1.18674 1.80538 1.50117 1.25444 0.83439 1.12735 0.98461 0.93897 0.90092 0.70864 0.76443 1.20134 0.97861 0.93329 0.96958 1.21185 1.00312 1.00917 0.95328 1.21312 0.97425 0.93498 0.96778 1.21611 1.02569 0.96833 1.01315 1.19200 0.95228 0.83576 0.94922 1.86053 1.71700 1.22925 1.44794 1.22999 0.99771 0.93066 0.85798 1.21159 1.01502 0.93053 0.98389 1.21535 1.04750 0.90358 0.99895 1.21234 0.78937 0.89214 0.80778 1.90746 1.39781 1.76242 1.40227 1.45559 1.53229 1.11013 1.25332 1.21781 0.97680 0.81324 0.98406 0.90497 1.23343 0.95931 1.01380 0.95627 1.21675 0.97887 0.93496 0.94803 0.85690 1.19872 0.95839 0.94611 0.96674 1.21557 0.96340 0.98622 0.95361 1.21504 0.99758 0.91875 1.00113 1.21356 0.94750 1.00783 0.95937 1.21945 1.01068 0.92609 1.02667 1.96762 1.75120 1.37047 1.88957 1.21089 1.00339 0.90729 0.99843 1.23593 0.98950 0.99650 0.96282 1.20323 1.04232 0.94941 0.97705 0.76479 0.86212 1.20385 1.23302 0.83466 0.82265 0.82797 0.89632 0.89848 0.92373 0.92254 0.85164 0.85258 0.74202 0.89007 0.88690 0.82784 0.82962 0.84572 0.85056 0.91053 0.89551 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.93 12.77 -148.98 -1.90 -4.83 16 2 C -0.09 -0.15 2.82 71.24 0.20 0.06 16 3 Si 0.78 -1.39 29.79 68.60 2.04 0.65 16 4 C -0.08 -0.19 5.39 -19.88 -0.11 -0.30 16 5 C -0.16 0.26 8.67 22.28 0.19 0.45 16 6 C -0.07 0.24 10.04 22.25 0.22 0.46 16 7 C -0.20 0.27 9.04 22.37 0.20 0.48 16 8 C 0.12 0.52 6.69 22.51 0.15 0.68 16 9 O -0.34 -1.96 10.14 -92.36 -0.94 -2.90 16 10 C 0.06 -0.18 4.74 71.98 0.34 0.16 16 11 C -0.10 0.06 4.87 30.59 0.15 0.21 16 12 C -0.13 0.99 5.70 29.85 0.17 1.16 16 13 C 0.51 0.05 7.83 87.66 0.69 0.73 16 14 O -0.59 -6.98 15.60 -3.04 -0.05 -7.02 16 15 N -0.70 4.02 5.26 -440.03 -2.32 1.71 16 16 C 0.11 -0.30 4.30 45.52 0.20 -0.10 16 17 H 0.08 0.27 7.50 -2.39 -0.02 0.26 16 18 C -0.12 0.82 7.29 31.12 0.23 1.05 16 19 C -0.06 0.43 3.87 -10.92 -0.04 0.38 16 20 H 0.13 -1.44 8.09 -2.39 -0.02 -1.46 16 21 C -0.07 0.22 5.29 -19.87 -0.11 0.12 16 22 C -0.10 0.49 9.71 22.27 0.22 0.70 16 23 C -0.11 0.39 10.05 22.27 0.22 0.61 16 24 C -0.11 -0.01 9.79 22.29 0.22 0.21 16 25 C -0.10 -0.24 6.22 22.31 0.14 -0.10 16 26 Br -0.06 -0.25 33.70 -20.37 -0.69 -0.94 16 27 C -0.10 -0.04 8.37 22.29 0.19 0.15 16 28 C -0.15 0.45 7.27 31.21 0.23 0.68 16 29 C -0.15 -0.96 9.55 22.37 0.21 -0.74 16 30 H 0.39 -0.26 8.70 -74.06 -0.64 -0.90 16 31 H 0.12 0.10 7.96 -2.39 -0.02 0.08 16 32 H -0.28 -0.32 7.11 99.48 0.71 0.39 16 33 H -0.30 -1.87 7.11 99.48 0.71 -1.16 16 34 H 0.15 -0.90 4.87 -2.91 -0.01 -0.91 16 35 H 0.16 -1.49 8.06 -2.91 -0.02 -1.51 16 36 H 0.15 -1.09 6.30 -2.91 -0.02 -1.11 16 37 H 0.09 -0.63 7.65 -2.38 -0.02 -0.65 16 38 H 0.08 -0.59 7.67 -2.39 -0.02 -0.61 16 39 H 0.06 0.25 8.10 -2.39 -0.02 0.24 16 40 H 0.06 0.25 8.10 -2.39 -0.02 0.23 16 41 H 0.13 -1.79 8.14 -2.38 -0.02 -1.81 16 42 H 0.13 -1.75 8.14 -2.39 -0.02 -1.77 16 43 H 0.42 -5.57 8.70 -92.71 -0.81 -6.38 16 44 H 0.09 -0.43 7.73 -2.38 -0.02 -0.45 16 45 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 46 H 0.15 -1.58 8.05 -2.91 -0.02 -1.60 16 47 H 0.15 -1.20 8.06 -2.92 -0.02 -1.23 16 48 H 0.14 -0.21 8.06 -2.91 -0.02 -0.24 16 49 H 0.13 -0.02 6.64 -2.91 -0.02 -0.04 16 50 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 51 H 0.09 -0.11 6.30 -2.39 -0.02 -0.13 16 52 H 0.11 1.02 8.06 -2.91 -0.02 0.99 16 Total: 0.00 -26.74 446.14 -0.39 -27.13 By element: Atomic # 1 Polarization: -20.38 SS G_CDS: -0.45 Total: -20.83 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 3.91 Total: 7.03 kcal Atomic # 7 Polarization: 4.02 SS G_CDS: -2.32 Total: 1.71 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -2.89 Total: -14.75 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: 2.04 Total: 0.65 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -0.69 Total: -0.94 kcal Total: -26.74 -0.39 -27.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14189268_4549616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.021 kcal (2) G-P(sol) polarization free energy of solvation -26.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds