Wall clock time and date at job start Tue Mar 9 2021 14:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35648 * 117.00649 * 2 1 4 4 C 1.40138 * 120.15553 * 180.02562 * 3 2 1 5 5 C 1.47535 * 120.18801 * 359.97438 * 4 3 2 6 6 O 1.21590 * 120.00060 * 359.72907 * 5 4 3 7 7 N 1.34779 * 119.99894 * 179.44683 * 5 4 3 8 8 C 1.46500 * 119.99803 * 175.26272 * 7 5 4 9 9 C 1.50705 * 112.85103 * 293.53025 * 8 7 5 10 10 N 1.34776 * 119.99833 * 323.91438 * 9 8 7 11 11 O 1.21272 * 119.99962 * 143.91042 * 9 8 7 12 12 C 1.53775 * 113.61413 * 162.22852 * 8 7 5 13 13 C 1.53780 * 87.08498 * 220.01879 * 12 8 7 14 14 H 1.09007 * 113.68829 * 270.87743 * 13 12 8 15 15 O 1.42892 * 113.61988 * 139.97866 * 13 12 8 16 16 C 1.53779 * 113.61532 * 64.73080 * 8 7 5 17 17 C 1.39703 * 119.61788 * 179.72730 * 4 3 2 18 18 C 1.37782 * 119.91064 * 0.24922 * 17 4 3 19 19 C 1.50696 * 119.85199 * 179.97438 * 18 17 4 20 20 O 1.42896 * 109.47820 * 300.00652 * 19 18 17 21 21 Si 1.86299 * 109.47232 * 180.02562 * 19 18 17 22 22 C 1.38552 * 120.30084 * 0.02622 * 18 17 4 23 23 C 1.38058 * 120.38813 * 359.95273 * 22 18 17 24 24 H 1.08996 * 109.47084 * 59.99127 * 1 2 3 25 25 H 1.08994 * 109.47638 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46892 * 299.99851 * 1 2 3 27 27 H 0.96998 * 119.99862 * 355.26395 * 7 5 4 28 28 H 0.97000 * 119.99755 * 354.95761 * 10 9 8 29 29 H 0.97003 * 119.99942 * 174.95414 * 10 9 8 30 30 H 1.09007 * 113.61477 * 334.56716 * 12 8 7 31 31 H 1.08997 * 113.61994 * 105.46702 * 12 8 7 32 32 H 0.96700 * 114.00424 * 82.50185 * 15 13 12 33 33 H 1.09003 * 113.61524 * 254.52412 * 16 8 7 34 34 H 1.08993 * 113.62030 * 25.34549 * 16 8 7 35 35 H 1.08003 * 120.04039 * 180.23043 * 17 4 3 36 36 H 1.09005 * 109.47088 * 60.00667 * 19 18 17 37 37 H 0.96701 * 113.99796 * 299.99814 * 20 19 18 38 38 H 1.48503 * 109.99956 * 180.02562 * 21 19 18 39 39 H 1.48494 * 110.00168 * 301.32115 * 21 19 18 40 40 H 1.07995 * 119.80825 * 179.97438 * 22 18 17 41 41 H 1.07998 * 119.95693 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2086 0.0000 4 6 3.4442 1.2855 -0.0005 5 6 4.2550 0.0530 -0.0005 6 8 3.7094 -1.0336 0.0049 7 7 5.6005 0.1314 -0.0123 8 6 6.4062 -1.0876 0.0924 9 6 6.2696 -1.7662 1.4311 10 7 6.1370 -1.0275 2.5506 11 8 6.2790 -2.9769 1.5010 12 6 7.8640 -0.9033 -0.3609 13 6 7.7533 -2.2903 -1.0158 14 1 8.0240 -3.1111 -0.3515 15 8 8.3929 -2.3741 -2.2908 16 6 6.2381 -2.0417 -1.1019 17 6 4.0669 2.5361 -0.0063 18 6 3.3040 3.6835 -0.0062 19 6 3.9771 5.0318 -0.0119 20 8 4.7970 5.1599 1.1514 21 14 2.6830 6.3719 -0.0095 22 6 1.9209 3.6033 0.0001 23 6 1.2926 2.3739 0.0054 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 6.0353 0.9950 -0.0902 28 1 6.2026 -0.0609 2.5044 29 1 5.9757 -1.4626 3.4025 30 1 7.9996 -0.0922 -1.0764 31 1 8.5762 -0.8653 0.4634 32 1 9.3460 -2.5303 -2.2432 33 1 5.6376 -2.9228 -0.8757 34 1 5.9277 -1.5422 -2.0195 35 1 5.1448 2.6034 -0.0105 36 1 4.5958 5.1253 -0.9045 37 1 4.3116 5.0869 1.9846 38 1 3.3340 7.7066 -0.0157 39 1 1.8035 6.2308 -1.1977 40 1 1.3307 4.5077 0.0005 41 1 0.2140 2.3195 0.0099 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14243910_12496546.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:53:24 Heat of formation + Delta-G solvation = -117.525774 kcal Electronic energy + Delta-G solvation = -28382.035571 eV Core-core repulsion = 24230.585832 eV Total energy + Delta-G solvation = -4151.449739 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.31059 -41.49986 -39.57283 -39.27363 -38.82801 -37.24660 -36.30017 -34.77142 -34.04790 -32.43900 -31.89584 -28.68774 -27.05319 -26.70917 -26.28702 -25.00676 -23.11634 -22.50057 -21.42355 -20.34962 -19.70371 -18.96378 -18.50974 -18.27665 -18.14923 -17.61854 -17.15141 -16.90934 -16.59370 -16.31827 -16.01947 -15.99127 -15.88420 -15.65128 -15.27204 -14.91803 -14.65448 -14.61639 -14.42338 -13.80562 -13.73941 -13.62705 -13.47387 -13.26085 -13.08231 -12.50772 -12.41816 -12.21212 -12.16730 -11.88712 -11.70844 -11.32255 -10.99223 -10.86045 -10.66003 -10.51023 -10.32127 -10.11091 -9.35585 -5.16952 -0.34565 0.11078 1.15724 1.42797 1.49897 1.75422 1.86131 1.95329 2.15452 2.38240 2.64051 3.14312 3.25312 3.28329 3.41324 3.47728 3.53038 3.58463 3.67207 3.79923 3.90506 3.99173 4.13660 4.15744 4.20242 4.26417 4.39663 4.44494 4.52139 4.58126 4.60911 4.79354 4.82474 4.97298 5.00401 5.14515 5.16731 5.30225 5.41318 5.77092 6.19032 6.27792 6.39717 6.41932 6.67650 7.19061 7.24914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.279 6.279 3 C 0.194 3.806 4 C -0.175 4.175 5 C 0.561 3.439 6 O -0.496 6.496 7 N -0.719 5.719 8 C 0.130 3.870 9 C 0.540 3.460 10 N -0.846 5.846 11 O -0.525 6.525 12 C -0.157 4.157 13 C 0.081 3.919 14 H 0.096 0.904 15 O -0.554 6.554 16 C -0.103 4.103 17 C -0.020 4.020 18 C -0.169 4.169 19 C -0.062 4.062 20 O -0.540 6.540 21 Si 0.685 3.315 22 C -0.046 4.046 23 C -0.213 4.213 24 H 0.059 0.941 25 H 0.106 0.894 26 H 0.059 0.941 27 H 0.403 0.597 28 H 0.401 0.599 29 H 0.405 0.595 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.381 0.619 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.115 0.885 37 H 0.380 0.620 38 H -0.253 1.253 39 H -0.257 1.257 40 H 0.134 0.866 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.836 6.782 3.008 7.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.189 6.189 3 C 0.145 3.855 4 C -0.179 4.179 5 C 0.348 3.652 6 O -0.370 6.370 7 N -0.376 5.376 8 C 0.040 3.960 9 C 0.322 3.678 10 N -0.410 5.410 11 O -0.399 6.399 12 C -0.195 4.195 13 C 0.022 3.978 14 H 0.114 0.886 15 O -0.359 6.359 16 C -0.142 4.142 17 C -0.039 4.039 18 C -0.169 4.169 19 C -0.173 4.173 20 O -0.346 6.346 21 Si 0.587 3.413 22 C -0.064 4.064 23 C -0.232 4.232 24 H 0.077 0.923 25 H 0.124 0.876 26 H 0.078 0.922 27 H 0.240 0.760 28 H 0.229 0.771 29 H 0.237 0.763 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.229 0.771 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.154 0.846 36 H 0.133 0.867 37 H 0.227 0.773 38 H -0.178 1.178 39 H -0.182 1.182 40 H 0.151 0.849 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.638 5.818 1.800 6.306 hybrid contribution 0.707 0.612 0.235 0.964 sum -0.931 6.430 2.036 6.809 Atomic orbital electron populations 1.23248 0.78047 1.04869 1.01469 1.86388 1.21322 1.25131 1.86049 1.19098 0.90920 0.85132 0.90303 1.19259 0.90829 0.93629 1.14209 1.18040 0.81560 0.88942 0.76642 1.90907 1.71142 1.28420 1.46489 1.45816 1.05799 1.08843 1.77135 1.21472 0.93580 0.87271 0.93719 1.19954 0.75222 0.87211 0.85424 1.43698 1.75748 1.11241 1.10281 1.90776 1.48982 1.13576 1.86583 1.24009 0.92519 1.01330 1.01688 1.23228 0.94086 0.95056 0.85463 0.88586 1.86539 1.25956 1.95077 1.28347 1.23204 0.95071 0.99701 0.96183 1.20950 0.99867 0.89792 0.93269 1.20120 0.93525 0.96036 1.07236 1.24949 1.01782 0.99170 0.91369 1.86499 1.37241 1.95379 1.15464 0.94806 0.80126 0.77710 0.88627 1.21015 0.93686 0.97363 0.94317 1.21250 1.00818 0.91543 1.09584 0.92288 0.87596 0.92214 0.75988 0.77106 0.76346 0.87182 0.89803 0.77149 0.88666 0.88106 0.84648 0.86737 0.77294 1.17795 1.18238 0.84861 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 101.05 0.99 0.97 16 2 O -0.28 -0.85 8.57 -40.52 -0.35 -1.20 16 3 C 0.19 0.30 6.70 -38.69 -0.26 0.04 16 4 C -0.18 -0.19 5.89 -104.85 -0.62 -0.80 16 5 C 0.56 1.51 7.42 -12.47 -0.09 1.41 16 6 O -0.50 -3.46 14.20 -16.59 -0.24 -3.70 16 7 N -0.72 0.35 4.73 -48.95 -0.23 0.12 16 8 C 0.13 0.13 1.05 -132.16 -0.14 0.00 16 9 C 0.54 1.60 6.61 -10.98 -0.07 1.53 16 10 N -0.85 0.43 8.78 31.22 0.27 0.71 16 11 O -0.53 -3.69 16.21 5.56 0.09 -3.60 16 12 C -0.16 0.20 7.21 -25.92 -0.19 0.01 16 13 C 0.08 0.10 4.82 -25.92 -0.13 -0.02 16 14 H 0.10 0.16 7.63 -51.93 -0.40 -0.23 16 15 O -0.55 -0.73 13.67 -35.23 -0.48 -1.21 16 16 C -0.10 -0.33 6.14 -25.92 -0.16 -0.49 16 17 C -0.02 0.03 9.08 -39.20 -0.36 -0.33 16 18 C -0.17 0.33 5.39 -104.67 -0.56 -0.24 16 19 C -0.06 0.15 2.81 36.00 0.10 0.25 16 20 O -0.54 1.28 12.76 -35.23 -0.45 0.83 16 21 Si 0.69 -1.88 29.77 -169.99 -5.06 -6.94 16 22 C -0.05 0.10 8.66 -39.53 -0.34 -0.24 16 23 C -0.21 0.23 9.03 -39.47 -0.36 -0.13 16 24 H 0.06 -0.15 7.67 -51.93 -0.40 -0.54 16 25 H 0.11 -0.19 8.14 -51.93 -0.42 -0.61 16 26 H 0.06 -0.17 7.65 -51.93 -0.40 -0.56 16 27 H 0.40 -1.43 6.75 -40.82 -0.28 -1.70 16 28 H 0.40 -1.25 8.47 -40.82 -0.35 -1.60 16 29 H 0.41 -0.46 8.93 -40.82 -0.36 -0.82 16 30 H 0.11 -0.26 8.14 -51.93 -0.42 -0.69 16 31 H 0.08 -0.21 8.10 -51.93 -0.42 -0.63 16 32 H 0.38 -1.16 9.12 45.56 0.42 -0.74 16 33 H 0.09 0.55 7.63 -51.93 -0.40 0.15 16 34 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.14 -0.49 6.42 -52.48 -0.34 -0.83 16 36 H 0.12 -0.25 7.96 -51.93 -0.41 -0.66 16 37 H 0.38 -2.26 8.70 45.56 0.40 -1.87 16 38 H -0.25 -0.20 7.11 56.52 0.40 0.20 16 39 H -0.26 0.09 7.11 56.52 0.40 0.49 16 40 H 0.13 -0.55 4.85 -52.49 -0.25 -0.81 16 41 H 0.14 -0.44 6.30 -52.49 -0.33 -0.77 16 LS Contribution 344.13 15.07 5.19 5.19 Total: 0.00 -12.71 344.13 -7.42 -20.13 By element: Atomic # 1 Polarization: -8.32 SS G_CDS: -3.98 Total: -12.30 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -2.18 Total: 1.96 kcal Atomic # 7 Polarization: 0.79 SS G_CDS: 0.04 Total: 0.83 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -1.42 Total: -8.87 kcal Atomic # 14 Polarization: -1.88 SS G_CDS: -5.06 Total: -6.94 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -12.71 -7.42 -20.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_12496546.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.395 kcal (2) G-P(sol) polarization free energy of solvation -12.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds