Wall clock time and date at job start Tue Mar 9 2021 14:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35648 * 117.00649 * 2 1 4 4 C 1.40138 * 120.15553 * 180.02562 * 3 2 1 5 5 C 1.47535 * 120.18801 * 359.97438 * 4 3 2 6 6 O 1.21590 * 120.00060 * 359.72907 * 5 4 3 7 7 N 1.34779 * 119.99894 * 179.44683 * 5 4 3 8 8 C 1.46500 * 119.99803 * 175.26272 * 7 5 4 9 9 C 1.50705 * 112.85103 * 293.53025 * 8 7 5 10 10 N 1.34776 * 119.99833 * 323.91438 * 9 8 7 11 11 O 1.21272 * 119.99962 * 143.91042 * 9 8 7 12 12 C 1.53775 * 113.61413 * 162.22852 * 8 7 5 13 13 C 1.53780 * 87.08498 * 220.01879 * 12 8 7 14 14 H 1.09007 * 113.68829 * 270.87743 * 13 12 8 15 15 O 1.42892 * 113.61988 * 139.97866 * 13 12 8 16 16 C 1.53779 * 113.61532 * 64.73080 * 8 7 5 17 17 C 1.39703 * 119.61788 * 179.72730 * 4 3 2 18 18 C 1.37782 * 119.91064 * 0.24922 * 17 4 3 19 19 C 1.50696 * 119.85199 * 179.97438 * 18 17 4 20 20 O 1.42896 * 109.47820 * 300.00652 * 19 18 17 21 21 Si 1.86299 * 109.47232 * 180.02562 * 19 18 17 22 22 C 1.38552 * 120.30084 * 0.02622 * 18 17 4 23 23 C 1.38058 * 120.38813 * 359.95273 * 22 18 17 24 24 H 1.08996 * 109.47084 * 59.99127 * 1 2 3 25 25 H 1.08994 * 109.47638 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46892 * 299.99851 * 1 2 3 27 27 H 0.96998 * 119.99862 * 355.26395 * 7 5 4 28 28 H 0.97000 * 119.99755 * 354.95761 * 10 9 8 29 29 H 0.97003 * 119.99942 * 174.95414 * 10 9 8 30 30 H 1.09007 * 113.61477 * 334.56716 * 12 8 7 31 31 H 1.08997 * 113.61994 * 105.46702 * 12 8 7 32 32 H 0.96700 * 114.00424 * 82.50185 * 15 13 12 33 33 H 1.09003 * 113.61524 * 254.52412 * 16 8 7 34 34 H 1.08993 * 113.62030 * 25.34549 * 16 8 7 35 35 H 1.08003 * 120.04039 * 180.23043 * 17 4 3 36 36 H 1.09005 * 109.47088 * 60.00667 * 19 18 17 37 37 H 0.96701 * 113.99796 * 299.99814 * 20 19 18 38 38 H 1.48503 * 109.99956 * 180.02562 * 21 19 18 39 39 H 1.48494 * 110.00168 * 301.32115 * 21 19 18 40 40 H 1.07995 * 119.80825 * 179.97438 * 22 18 17 41 41 H 1.07998 * 119.95693 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2086 0.0000 4 6 3.4442 1.2855 -0.0005 5 6 4.2550 0.0530 -0.0005 6 8 3.7094 -1.0336 0.0049 7 7 5.6005 0.1314 -0.0123 8 6 6.4062 -1.0876 0.0924 9 6 6.2696 -1.7662 1.4311 10 7 6.1370 -1.0275 2.5506 11 8 6.2790 -2.9769 1.5010 12 6 7.8640 -0.9033 -0.3609 13 6 7.7533 -2.2903 -1.0158 14 1 8.0240 -3.1111 -0.3515 15 8 8.3929 -2.3741 -2.2908 16 6 6.2381 -2.0417 -1.1019 17 6 4.0669 2.5361 -0.0063 18 6 3.3040 3.6835 -0.0062 19 6 3.9771 5.0318 -0.0119 20 8 4.7970 5.1599 1.1514 21 14 2.6830 6.3719 -0.0095 22 6 1.9209 3.6033 0.0001 23 6 1.2926 2.3739 0.0054 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 6.0353 0.9950 -0.0902 28 1 6.2026 -0.0609 2.5044 29 1 5.9757 -1.4626 3.4025 30 1 7.9996 -0.0922 -1.0764 31 1 8.5762 -0.8653 0.4634 32 1 9.3460 -2.5303 -2.2432 33 1 5.6376 -2.9228 -0.8757 34 1 5.9277 -1.5422 -2.0195 35 1 5.1448 2.6034 -0.0105 36 1 4.5958 5.1253 -0.9045 37 1 4.3116 5.0869 1.9846 38 1 3.3340 7.7066 -0.0157 39 1 1.8035 6.2308 -1.1977 40 1 1.3307 4.5077 0.0005 41 1 0.2140 2.3195 0.0099 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_12496546.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:53:23 Heat of formation + Delta-G solvation = -128.555425 kcal Electronic energy + Delta-G solvation = -28382.513853 eV Core-core repulsion = 24230.585832 eV Total energy + Delta-G solvation = -4151.928021 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.42605 -41.49225 -39.75184 -39.18439 -38.98921 -37.08252 -36.44286 -34.90451 -34.17244 -32.37761 -31.77777 -28.57885 -27.16360 -26.77917 -26.13594 -25.02020 -23.17336 -22.46934 -21.46626 -20.48905 -19.68830 -19.03889 -18.47183 -18.32119 -18.07057 -17.72077 -17.14160 -16.89122 -16.65434 -16.24961 -16.04242 -15.92554 -15.82576 -15.79839 -15.40537 -14.94407 -14.67619 -14.53935 -14.48190 -13.79514 -13.62111 -13.57965 -13.48828 -13.29405 -13.10584 -12.61018 -12.45336 -12.08827 -12.05592 -11.81987 -11.77642 -11.54240 -11.07161 -10.96462 -10.80700 -10.37470 -10.36414 -10.13631 -9.29375 -4.96264 -0.28623 0.21915 1.25080 1.36046 1.65644 1.70728 1.86804 2.02528 2.25374 2.30162 2.66173 3.09109 3.21777 3.39635 3.49999 3.56065 3.58823 3.66748 3.77090 3.80868 3.97047 4.10541 4.18830 4.27966 4.33590 4.40681 4.52381 4.58666 4.58911 4.66936 4.72568 4.75698 4.83247 4.90326 4.93674 5.10786 5.21296 5.27772 5.56368 5.71262 6.21694 6.28121 6.42163 6.82320 6.84689 7.10374 7.14691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.315 6.315 3 C 0.171 3.829 4 C -0.194 4.194 5 C 0.559 3.441 6 O -0.549 6.549 7 N -0.699 5.699 8 C 0.133 3.867 9 C 0.533 3.467 10 N -0.828 5.828 11 O -0.575 6.575 12 C -0.132 4.132 13 C 0.083 3.917 14 H 0.086 0.914 15 O -0.569 6.569 16 C -0.116 4.116 17 C -0.012 4.012 18 C -0.166 4.166 19 C -0.059 4.059 20 O -0.551 6.551 21 Si 0.764 3.236 22 C -0.041 4.041 23 C -0.213 4.213 24 H 0.071 0.929 25 H 0.104 0.896 26 H 0.076 0.924 27 H 0.421 0.579 28 H 0.416 0.584 29 H 0.410 0.590 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.399 0.601 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.158 0.842 36 H 0.115 0.885 37 H 0.396 0.604 38 H -0.303 1.303 39 H -0.287 1.287 40 H 0.155 0.845 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.104 9.264 3.529 9.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.226 6.226 3 C 0.122 3.878 4 C -0.198 4.198 5 C 0.348 3.652 6 O -0.426 6.426 7 N -0.356 5.356 8 C 0.042 3.958 9 C 0.316 3.684 10 N -0.392 5.392 11 O -0.453 6.453 12 C -0.170 4.170 13 C 0.023 3.977 14 H 0.104 0.896 15 O -0.378 6.378 16 C -0.155 4.155 17 C -0.030 4.030 18 C -0.166 4.166 19 C -0.169 4.169 20 O -0.359 6.359 21 Si 0.672 3.328 22 C -0.059 4.059 23 C -0.232 4.232 24 H 0.090 0.910 25 H 0.122 0.878 26 H 0.095 0.905 27 H 0.262 0.738 28 H 0.247 0.753 29 H 0.241 0.759 30 H 0.149 0.851 31 H 0.124 0.876 32 H 0.250 0.750 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.175 0.825 36 H 0.132 0.868 37 H 0.246 0.754 38 H -0.231 1.231 39 H -0.214 1.214 40 H 0.172 0.828 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.871 8.360 2.361 8.731 hybrid contribution 0.450 -0.080 0.058 0.461 sum -0.421 8.280 2.419 8.636 Atomic orbital electron populations 1.23427 0.76596 1.05316 1.02894 1.86341 1.23154 1.26588 1.86541 1.19450 0.91470 0.85466 0.91396 1.19295 0.90825 0.93693 1.15984 1.18412 0.82312 0.88872 0.75632 1.90887 1.72240 1.30375 1.49119 1.45604 1.04860 1.09235 1.75916 1.21329 0.95345 0.87137 0.91983 1.20295 0.74622 0.86798 0.86666 1.43575 1.73984 1.11968 1.09647 1.90750 1.51513 1.15734 1.87347 1.23929 0.90801 1.00007 1.02224 1.23100 0.92532 0.96574 0.85516 0.89575 1.86490 1.27729 1.95228 1.28350 1.23189 0.96338 0.98994 0.96974 1.21128 1.00982 0.88777 0.92157 1.20240 0.93666 0.96105 1.06628 1.24944 1.01739 0.98605 0.91657 1.86473 1.37866 1.95287 1.16271 0.93917 0.77945 0.74357 0.86625 1.21288 0.93918 0.97733 0.92968 1.21456 1.01720 0.90971 1.09015 0.91020 0.87790 0.90519 0.73825 0.75331 0.75860 0.85100 0.87554 0.74974 0.92489 0.88797 0.82455 0.86762 0.75388 1.23119 1.21398 0.82760 0.82276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.10 16 2 O -0.31 -2.51 8.57 -68.71 -0.59 -3.10 16 3 C 0.17 0.63 6.70 22.84 0.15 0.78 16 4 C -0.19 -0.45 5.89 -20.01 -0.12 -0.57 16 5 C 0.56 3.64 7.42 86.69 0.64 4.29 16 6 O -0.55 -9.25 14.20 16.92 0.24 -9.01 16 7 N -0.70 0.76 4.73 -427.05 -2.02 -1.26 16 8 C 0.13 0.36 1.05 3.38 0.00 0.36 16 9 C 0.53 3.82 6.61 87.66 0.58 4.39 16 10 N -0.83 0.77 8.78 -173.54 -1.52 -0.75 16 11 O -0.58 -9.61 16.21 -3.01 -0.05 -9.66 16 12 C -0.13 0.49 7.21 31.12 0.22 0.71 16 13 C 0.08 0.28 4.82 31.12 0.15 0.43 16 14 H 0.09 0.45 7.63 -2.38 -0.02 0.43 16 15 O -0.57 -1.62 13.67 -148.98 -2.04 -3.66 16 16 C -0.12 -1.02 6.14 31.12 0.19 -0.83 16 17 C -0.01 0.05 9.08 22.52 0.20 0.26 16 18 C -0.17 0.95 5.39 -19.90 -0.11 0.85 16 19 C -0.06 0.41 2.81 71.23 0.20 0.61 16 20 O -0.55 3.93 12.76 -148.98 -1.90 2.03 16 21 Si 0.76 -5.15 29.77 68.60 2.04 -3.11 16 22 C -0.04 0.25 8.66 22.30 0.19 0.44 16 23 C -0.21 0.62 9.03 22.34 0.20 0.82 16 24 H 0.07 -0.33 7.67 -2.39 -0.02 -0.34 16 25 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 26 H 0.08 -0.42 7.65 -2.39 -0.02 -0.43 16 27 H 0.42 -3.70 6.75 -92.71 -0.63 -4.33 16 28 H 0.42 -3.03 8.47 -92.71 -0.79 -3.82 16 29 H 0.41 -0.79 8.93 -92.71 -0.83 -1.62 16 30 H 0.13 -0.97 8.14 -2.38 -0.02 -0.99 16 31 H 0.11 -0.79 8.10 -2.39 -0.02 -0.81 16 32 H 0.40 -2.60 9.12 -74.06 -0.68 -3.27 16 33 H 0.06 0.92 7.63 -2.39 -0.02 0.91 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 35 H 0.16 -1.54 6.42 -2.91 -0.02 -1.55 16 36 H 0.12 -0.74 7.96 -2.38 -0.02 -0.76 16 37 H 0.40 -5.76 8.70 -74.06 -0.64 -6.40 16 38 H -0.30 -0.55 7.11 99.48 0.71 0.16 16 39 H -0.29 0.49 7.11 99.48 0.71 1.20 16 40 H 0.16 -1.64 4.85 -2.91 -0.01 -1.66 16 41 H 0.16 -1.18 6.30 -2.91 -0.02 -1.20 16 Total: 0.00 -34.14 344.13 -4.57 -38.71 By element: Atomic # 1 Polarization: -21.46 SS G_CDS: -2.37 Total: -23.83 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 3.63 Total: 13.63 kcal Atomic # 7 Polarization: 1.53 SS G_CDS: -3.55 Total: -2.01 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -4.33 Total: -23.40 kcal Atomic # 14 Polarization: -5.15 SS G_CDS: 2.04 Total: -3.11 kcal Total: -34.14 -4.57 -38.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_12496546.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.845 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds