Wall clock time and date at job start Tue Mar 9 2021 14:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 N 1.46504 * 112.85135 * 336.19769 * 5 3 2 7 7 C 1.34783 * 120.00018 * 50.32996 * 6 5 3 8 8 O 1.21611 * 119.99496 * 0.02562 * 7 6 5 9 9 C 1.47369 * 119.99965 * 180.02562 * 7 6 5 10 10 C 1.36418 * 127.19394 * 179.71329 * 9 7 6 11 11 C 1.50702 * 125.79599 * 0.02562 * 10 9 7 12 12 O 1.33646 * 108.40259 * 179.89627 * 10 9 7 13 13 C 1.34219 * 110.90372 * 0.38245 * 12 10 9 14 14 C 1.50700 * 125.43218 * 179.76689 * 13 12 10 15 15 O 1.42902 * 109.46764 * 244.99906 * 14 13 12 16 16 Si 1.86291 * 109.47593 * 4.99966 * 14 13 12 17 17 C 1.34176 * 109.12669 * 359.76367 * 13 12 10 18 18 C 1.53783 * 113.61592 * 205.00183 * 5 3 2 19 19 C 1.53775 * 87.07953 * 270.88234 * 18 5 3 20 20 H 1.09003 * 113.61211 * 89.11917 * 19 18 5 21 21 O 1.42901 * 113.61440 * 219.93235 * 19 18 5 22 22 C 1.42896 * 114.00151 * 210.00296 * 21 19 18 23 23 C 1.53774 * 87.08256 * 334.56578 * 19 18 5 24 24 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 25 25 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 26 26 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 27 27 H 0.97005 * 120.00078 * 230.33850 * 6 5 3 28 28 H 1.09003 * 109.46936 * 90.00504 * 11 10 9 29 29 H 1.09005 * 109.47202 * 209.99933 * 11 10 9 30 30 H 1.08994 * 109.47757 * 330.00527 * 11 10 9 31 31 H 1.09004 * 109.47199 * 125.00221 * 14 13 12 32 32 H 0.96702 * 114.00197 * 180.02562 * 15 14 13 33 33 H 1.48503 * 110.00209 * 299.99954 * 16 14 13 34 34 H 1.48500 * 110.00219 * 61.32336 * 16 14 13 35 35 H 1.07996 * 127.02035 * 179.97438 * 17 13 12 36 36 H 1.09006 * 113.61249 * 25.43401 * 18 5 3 37 37 H 1.09003 * 113.61589 * 156.24912 * 18 5 3 38 38 H 1.09002 * 109.47535 * 179.97438 * 22 21 19 39 39 H 1.09001 * 109.47392 * 300.00183 * 22 21 19 40 40 H 1.09004 * 109.47700 * 60.00128 * 22 21 19 41 41 H 1.09002 * 113.61438 * 270.88275 * 23 19 18 42 42 H 1.09003 * 113.61454 * 139.98252 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1993 0.0710 0.5438 7 6 3.8374 -1.1450 0.0890 8 8 2.9856 -1.2428 -0.7735 9 6 4.4737 -2.3560 0.6370 10 6 4.2181 -3.6506 0.2909 11 6 3.2169 -4.1063 -0.7391 12 8 5.0084 -4.4458 1.0183 13 6 5.7800 -3.7254 1.8473 14 6 6.7864 -4.2905 2.8162 15 8 6.3714 -4.0063 4.1538 16 14 6.9065 -6.1348 2.5819 17 6 5.5123 -2.4219 1.6755 18 6 4.1149 2.5823 0.5950 19 6 4.0303 3.1715 -0.8229 20 1 3.0686 3.6330 -1.0472 21 8 5.1392 4.0063 -1.1629 22 6 4.8201 5.0489 -2.0865 23 6 4.1588 1.7306 -1.3444 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.8789 0.1491 1.2316 28 1 3.7001 -4.1649 -1.7145 29 1 2.8340 -5.0890 -0.4638 30 1 2.3925 -3.3948 -0.7844 31 1 7.7607 -3.8370 2.6340 32 1 6.9738 -4.3412 4.8321 33 1 5.5845 -6.7651 2.8276 34 1 7.3679 -6.4428 1.2044 35 1 5.9667 -1.5909 2.1945 36 1 3.4379 3.0561 1.3059 37 1 5.1335 2.4961 0.9734 38 1 5.7140 5.6376 -2.2930 39 1 4.4501 4.6120 -3.0141 40 1 4.0528 5.6929 -1.6568 41 1 5.1899 1.4120 -1.4976 42 1 3.5173 1.5169 -2.1994 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_13308374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:59:14 Heat of formation + Delta-G solvation = -130.916731 kcal Electronic energy + Delta-G solvation = -29057.606595 eV Core-core repulsion = 24780.546040 eV Total energy + Delta-G solvation = -4277.060555 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.87690 -42.58033 -40.42654 -39.84984 -37.87630 -37.81661 -37.08232 -34.67836 -33.89958 -33.18743 -29.68315 -29.17711 -27.90686 -27.22533 -26.44165 -25.49554 -24.29430 -23.20860 -22.16108 -20.93384 -20.60236 -19.14867 -18.74202 -18.52059 -17.97625 -17.70125 -17.39694 -17.35363 -17.06517 -16.87320 -16.18012 -15.98518 -15.82554 -15.55498 -15.18022 -15.09295 -14.67008 -14.53681 -14.30549 -14.17028 -14.12457 -13.93438 -13.76620 -13.62339 -13.31194 -13.13221 -13.08876 -12.61252 -12.53464 -12.28283 -12.22168 -12.19259 -11.86709 -11.68710 -11.03397 -10.96060 -10.63952 -10.44044 -10.33523 -9.65720 -5.07489 0.14229 0.73959 0.83971 1.18249 1.43333 1.54160 1.64613 1.85540 2.02526 2.21784 2.78585 2.92887 3.17019 3.18811 3.43540 3.54685 3.65617 3.68861 3.70864 3.96525 4.07796 4.15266 4.21482 4.27373 4.39590 4.40389 4.44875 4.48809 4.50175 4.51351 4.57838 4.59170 4.64188 4.67418 4.72046 4.77766 4.84870 5.03077 5.14654 5.18027 5.24935 5.80945 6.11322 6.35570 6.51549 6.85944 7.10326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.324 6.324 3 C 0.473 3.527 4 O -0.526 6.526 5 C 0.155 3.845 6 N -0.697 5.697 7 C 0.590 3.410 8 O -0.522 6.522 9 C -0.257 4.257 10 C 0.076 3.924 11 C -0.083 4.083 12 O -0.194 6.194 13 C -0.038 4.038 14 C -0.034 4.034 15 O -0.560 6.560 16 Si 0.802 3.198 17 C -0.140 4.140 18 C -0.106 4.106 19 C 0.067 3.933 20 H 0.095 0.905 21 O -0.384 6.384 22 C 0.022 3.978 23 C -0.139 4.139 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.118 0.882 27 H 0.422 0.578 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.131 0.869 32 H 0.414 0.586 33 H -0.310 1.310 34 H -0.295 1.295 35 H 0.188 0.812 36 H 0.094 0.906 37 H 0.138 0.862 38 H 0.101 0.899 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.120 0.880 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.234 -1.046 3.523 7.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.238 6.238 3 C 0.315 3.685 4 O -0.415 6.415 5 C 0.066 3.934 6 N -0.352 5.352 7 C 0.378 3.622 8 O -0.400 6.400 9 C -0.262 4.262 10 C 0.023 3.977 11 C -0.139 4.139 12 O -0.093 6.093 13 C -0.085 4.085 14 C -0.144 4.144 15 O -0.372 6.372 16 Si 0.709 3.291 17 C -0.159 4.159 18 C -0.144 4.144 19 C 0.008 3.992 20 H 0.113 0.887 21 O -0.302 6.302 22 C -0.074 4.074 23 C -0.177 4.177 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.136 0.864 27 H 0.261 0.739 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.124 0.876 31 H 0.148 0.852 32 H 0.267 0.733 33 H -0.238 1.238 34 H -0.223 1.223 35 H 0.205 0.795 36 H 0.113 0.887 37 H 0.156 0.844 38 H 0.119 0.881 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.139 0.861 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.831 -1.585 2.246 5.559 hybrid contribution -0.762 0.641 -0.204 1.016 sum 4.070 -0.944 2.043 4.650 Atomic orbital electron populations 1.23484 0.76360 1.04960 1.02208 1.86986 1.23544 1.31164 1.82062 1.23535 0.91333 0.81942 0.71653 1.90664 1.66845 1.37098 1.46937 1.20988 0.85270 0.87229 0.99901 1.45446 1.43114 1.03208 1.43440 1.17219 0.80975 0.82476 0.81500 1.90797 1.31404 1.86337 1.31425 1.21164 1.05924 0.93236 1.05851 1.23293 0.92149 0.88274 0.93960 1.20714 0.95260 1.03719 0.94209 1.83701 1.42926 1.39147 1.43518 1.21825 0.98758 0.90706 0.97259 1.23922 0.94773 1.12991 0.82694 1.86413 1.54349 1.82610 1.13781 0.94389 0.80781 0.72562 0.81403 1.22882 0.97994 0.97145 0.97830 1.23523 1.04355 0.89191 0.97316 1.23501 0.90781 0.89584 0.95310 0.88691 1.87886 1.33790 1.44397 1.64144 1.23006 1.02796 0.89672 0.91958 1.23907 1.03196 0.95879 0.94757 0.92120 0.91942 0.86412 0.73905 0.88235 0.89258 0.87600 0.85201 0.73281 1.23824 1.22272 0.79500 0.88739 0.84443 0.88051 0.93533 0.93198 0.86135 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.56 113.37 1.20 1.31 16 2 O -0.32 -3.20 6.34 -43.46 -0.28 -3.48 16 3 C 0.47 4.25 6.96 71.24 0.50 4.75 16 4 O -0.53 -6.39 14.97 21.98 0.33 -6.06 16 5 C 0.16 0.48 1.22 3.38 0.00 0.48 16 6 N -0.70 -0.82 5.32 -427.19 -2.27 -3.09 16 7 C 0.59 3.87 7.14 86.65 0.62 4.49 16 8 O -0.52 -5.87 11.42 20.01 0.23 -5.64 16 9 C -0.26 -1.55 6.31 -18.99 -0.12 -1.67 16 10 C 0.08 0.55 7.37 25.26 0.19 0.74 16 11 C -0.08 -0.26 9.89 71.24 0.70 0.44 16 12 O -0.19 -1.64 8.90 4.48 0.04 -1.60 16 13 C -0.04 -0.16 6.22 24.76 0.15 -0.01 16 14 C -0.03 0.12 2.96 71.24 0.21 0.33 16 15 O -0.56 2.22 12.86 -148.98 -1.92 0.31 16 16 Si 0.80 -2.03 32.09 68.60 2.20 0.18 16 17 C -0.14 -0.30 10.48 23.65 0.25 -0.05 16 18 C -0.11 0.08 6.96 31.12 0.22 0.30 16 19 C 0.07 0.15 3.89 31.12 0.12 0.27 16 20 H 0.10 0.40 7.01 -2.39 -0.02 0.38 16 21 O -0.38 -1.18 10.72 -148.98 -1.60 -2.77 16 22 C 0.02 -0.02 10.85 113.37 1.23 1.21 16 23 C -0.14 -0.37 7.28 31.12 0.23 -0.14 16 24 H 0.06 0.30 8.13 -2.39 -0.02 0.28 16 25 H 0.06 0.25 8.13 -2.39 -0.02 0.23 16 26 H 0.12 0.08 8.14 -2.38 -0.02 0.06 16 27 H 0.42 -2.02 7.81 -92.70 -0.72 -2.75 16 28 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.09 0.05 8.14 -2.38 -0.02 0.03 16 30 H 0.11 0.53 6.49 -2.39 -0.02 0.51 16 31 H 0.13 -1.32 7.96 -2.39 -0.02 -1.34 16 32 H 0.41 -6.33 8.74 -74.06 -0.65 -6.98 16 33 H -0.31 -2.32 7.11 99.48 0.71 -1.61 16 34 H -0.30 -1.28 7.11 99.48 0.71 -0.58 16 35 H 0.19 -0.87 7.74 -2.91 -0.02 -0.89 16 36 H 0.09 -0.02 7.88 -2.38 -0.02 -0.03 16 37 H 0.14 -0.76 8.13 -2.39 -0.02 -0.78 16 38 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 39 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.05 -0.08 8.14 -2.38 -0.02 -0.10 16 41 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.07 0.37 8.09 -2.39 -0.02 0.35 16 Total: 0.00 -25.14 358.04 1.97 -23.17 By element: Atomic # 1 Polarization: -13.20 SS G_CDS: -0.26 Total: -13.47 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 5.49 Total: 12.45 kcal Atomic # 7 Polarization: -0.82 SS G_CDS: -2.27 Total: -3.09 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -3.19 Total: -19.25 kcal Atomic # 14 Polarization: -2.03 SS G_CDS: 2.20 Total: 0.18 kcal Total: -25.14 1.97 -23.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_13308374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.743 kcal (2) G-P(sol) polarization free energy of solvation -25.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds