Wall clock time and date at job start Tue Mar 9 2021 12:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39613 * 120.15273 * 309.49476 * 3 2 1 5 5 C 1.37959 * 119.84723 * 179.97438 * 4 3 2 6 6 C 1.38346 * 120.15105 * 359.74417 * 5 4 3 7 7 C 1.38386 * 120.30365 * 0.51354 * 6 5 4 8 8 C 1.50693 * 119.92217 * 179.75978 * 7 6 5 9 9 H 1.08997 * 112.90894 * 190.97706 * 8 7 6 10 10 C 1.53781 * 113.61855 * 322.23002 * 8 7 6 11 11 C 1.53785 * 87.08279 * 139.98028 * 10 8 7 12 12 H 1.08999 * 113.68962 * 220.01161 * 11 10 8 13 13 N 1.46497 * 113.61392 * 89.11547 * 11 10 8 14 14 C 1.34781 * 119.99947 * 107.50214 * 13 11 10 15 15 O 1.21696 * 119.99692 * 0.02562 * 14 13 11 16 16 C 1.46678 * 119.99818 * 179.97438 * 14 13 11 17 17 C 1.37871 * 126.22782 * 180.02562 * 16 14 13 18 18 C 1.39834 * 107.08165 * 180.02562 * 17 16 14 19 19 C 1.50704 * 126.06892 * 179.97438 * 18 17 16 20 20 O 1.42901 * 109.46742 * 65.05299 * 19 18 17 21 21 Si 1.86297 * 109.47571 * 185.05504 * 19 18 17 22 22 C 1.35452 * 107.86685 * 0.02562 * 18 17 16 23 23 N 1.35535 * 108.86987 * 359.97438 * 22 18 17 24 24 C 1.53785 * 87.08045 * 334.56755 * 11 10 8 25 25 C 1.37921 * 120.14977 * 359.48938 * 7 6 5 26 26 H 1.08004 * 120.07632 * 359.96246 * 4 3 2 27 27 H 1.08000 * 119.92818 * 180.02562 * 5 4 3 28 28 H 1.08005 * 119.84531 * 180.27514 * 6 5 4 29 29 H 1.09002 * 113.61177 * 25.43255 * 10 8 7 30 30 H 1.09004 * 113.61283 * 254.52607 * 10 8 7 31 31 H 0.96998 * 120.00389 * 287.50552 * 13 11 10 32 32 H 1.08003 * 126.46200 * 359.97438 * 17 16 14 33 33 H 1.09004 * 109.47014 * 305.05788 * 19 18 17 34 34 H 0.96700 * 113.99894 * 60.00245 * 20 19 18 35 35 H 1.48496 * 110.00254 * 180.02562 * 21 19 18 36 36 H 1.48505 * 110.00003 * 301.32329 * 21 19 18 37 37 H 1.08006 * 125.56278 * 180.26333 * 22 18 17 38 38 H 0.97003 * 125.67591 * 180.02562 * 23 22 18 39 39 H 1.08998 * 113.61322 * 139.98021 * 24 11 10 40 40 H 1.09005 * 113.61456 * 270.88457 * 24 11 10 41 41 H 1.08001 * 120.07524 * 180.27836 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 -0.7668 0.9316 5 6 4.6492 -0.7620 0.9256 6 6 5.3373 -0.0030 -0.0042 7 6 4.6482 0.7642 -0.9270 8 6 5.4065 1.5918 -1.9324 9 1 4.7691 2.2911 -2.4735 10 6 6.6826 2.2348 -1.3640 11 6 7.3564 1.8949 -2.7040 12 1 8.3821 1.5409 -2.6011 13 7 7.2160 2.9460 -3.7148 14 6 8.2788 3.7034 -4.0515 15 8 9.3551 3.5138 -3.5162 16 6 8.1383 4.7555 -5.0639 17 6 9.1345 5.6007 -5.5043 18 6 8.5649 6.4410 -6.4659 19 6 9.2766 7.5309 -7.2254 20 8 10.2774 6.9511 -8.0646 21 14 8.0491 8.4606 -8.2740 22 6 7.2595 6.1023 -6.5929 23 7 6.9878 5.0792 -5.7465 24 6 6.3253 0.7627 -2.8453 25 6 3.2690 0.7686 -0.9322 26 1 2.7336 -1.3629 1.6554 27 1 5.1933 -1.3555 1.6454 28 1 6.4174 -0.0063 -0.0072 29 1 7.1024 1.6954 -0.5150 30 1 6.5883 3.3054 -1.1820 31 1 6.3582 3.0970 -4.1416 32 1 10.1611 5.6123 -5.1691 33 1 9.7463 8.2174 -6.5209 34 1 9.9303 6.3280 -8.7177 35 1 8.7387 9.5378 -9.0285 36 1 7.3787 7.5297 -9.2170 37 1 6.5520 6.5682 -7.2630 38 1 6.1259 4.6471 -5.6397 39 1 5.9425 0.6448 -3.8590 40 1 6.6474 -0.1792 -2.4012 41 1 2.7325 1.3643 -1.6559 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_10543058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:50:47 Heat of formation + Delta-G solvation = 63.916489 kcal Electronic energy + Delta-G solvation = -25166.879412 eV Core-core repulsion = 21401.013703 eV Total energy + Delta-G solvation = -3765.865709 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.48794 -41.43556 -40.22696 -38.93177 -37.78554 -37.45745 -34.75346 -32.61910 -32.23542 -31.92917 -30.58920 -26.88197 -26.65903 -26.03216 -24.96016 -24.02933 -22.77962 -21.28138 -20.89483 -20.72443 -19.90350 -18.97897 -17.61555 -17.35944 -17.18571 -16.80016 -16.52707 -16.43981 -16.00004 -15.74379 -15.64342 -15.19506 -15.10301 -14.84605 -14.61368 -14.51414 -14.35283 -14.16223 -13.96937 -13.84859 -13.78658 -13.44645 -13.41157 -12.97599 -12.78911 -12.49641 -12.44297 -11.81362 -11.76435 -11.68801 -11.31865 -11.21701 -10.46975 -10.22036 -9.94855 -9.90767 -9.66266 -9.27841 -4.82559 -0.18860 0.36363 0.39049 1.40715 1.56586 1.56674 1.68632 1.90946 1.92979 2.10347 2.15929 2.26773 2.82796 2.85887 3.48553 3.57537 3.70939 3.72969 3.82902 3.93821 4.00099 4.01675 4.18328 4.18651 4.20033 4.32606 4.37427 4.51817 4.67652 4.75232 4.77711 4.83595 4.86617 4.94231 4.99652 5.04600 5.06161 5.08554 5.17670 5.35130 5.41995 5.49400 5.60494 5.67300 5.75391 5.89924 6.37019 6.39970 6.53717 6.64596 7.08507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.276 3.724 3 C -0.046 4.046 4 C -0.076 4.076 5 C -0.118 4.118 6 C -0.084 4.084 7 C -0.075 4.075 8 C -0.064 4.064 9 H 0.114 0.886 10 C -0.142 4.142 11 C 0.110 3.890 12 H 0.087 0.913 13 N -0.697 5.697 14 C 0.591 3.409 15 O -0.574 6.574 16 C -0.068 4.068 17 C -0.105 4.105 18 C -0.224 4.224 19 C -0.061 4.061 20 O -0.558 6.558 21 Si 0.787 3.213 22 C 0.060 3.940 23 N -0.514 5.514 24 C -0.124 4.124 25 C -0.066 4.066 26 H 0.139 0.861 27 H 0.154 0.846 28 H 0.149 0.851 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.412 0.588 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.384 0.616 35 H -0.315 1.315 36 H -0.267 1.267 37 H 0.213 0.787 38 H 0.437 0.563 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.130 -0.487 -0.931 3.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.038 4.038 3 C -0.050 4.050 4 C -0.097 4.097 5 C -0.135 4.135 6 C -0.102 4.102 7 C -0.075 4.075 8 C -0.083 4.083 9 H 0.132 0.868 10 C -0.180 4.180 11 C 0.005 3.995 12 H 0.105 0.895 13 N -0.348 5.348 14 C 0.380 3.620 15 O -0.454 6.454 16 C -0.181 4.181 17 C -0.132 4.132 18 C -0.231 4.231 19 C -0.169 4.169 20 O -0.366 6.366 21 Si 0.691 3.309 22 C -0.079 4.079 23 N -0.112 5.112 24 C -0.162 4.162 25 C -0.087 4.087 26 H 0.157 0.843 27 H 0.171 0.829 28 H 0.166 0.834 29 H 0.122 0.878 30 H 0.086 0.914 31 H 0.249 0.751 32 H 0.142 0.858 33 H 0.126 0.874 34 H 0.233 0.767 35 H -0.244 1.244 36 H -0.193 1.193 37 H 0.229 0.771 38 H 0.279 0.721 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.143 -0.182 -0.905 4.244 hybrid contribution 0.502 -0.991 -0.479 1.210 sum -3.641 -1.173 -1.384 4.068 Atomic orbital electron populations 1.81321 1.13800 1.10121 1.09716 1.26162 0.93086 0.92257 0.92287 1.16104 0.82868 1.04296 1.01686 1.21408 0.95160 0.96540 0.96589 1.21376 0.93144 0.99494 0.99518 1.21601 1.01632 0.93842 0.93148 1.19673 0.92383 0.98087 0.97322 1.21608 0.94651 0.96857 0.95150 0.86760 1.23591 0.95402 1.01777 0.97258 1.21948 1.00501 0.88490 0.88589 0.89529 1.45374 1.12245 1.35132 1.42030 1.17219 0.83954 0.80295 0.80549 1.90855 1.28588 1.70365 1.55556 1.20114 0.88870 1.04623 1.04480 1.21234 0.98287 0.95862 0.97819 1.19866 0.95002 1.03809 1.04376 1.24748 0.97613 0.97123 0.97425 1.86573 1.35984 1.63277 1.50764 0.94269 0.79981 0.76742 0.79870 1.22360 0.96969 0.91708 0.96838 1.41844 1.10676 1.27902 1.30742 1.23417 0.94297 0.97294 1.01163 1.21208 0.94054 0.96736 0.96666 0.84324 0.82853 0.83379 0.87764 0.91396 0.75147 0.85839 0.87442 0.76680 1.24385 1.19271 0.77100 0.72116 0.89404 0.87432 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -4.80 18.54 19.00 0.35 -4.44 16 2 C 0.28 1.00 15.33 88.33 1.35 2.35 16 3 C -0.05 0.12 5.73 -21.36 -0.12 0.00 16 4 C -0.08 0.40 9.76 22.54 0.22 0.62 16 5 C -0.12 0.96 10.03 22.23 0.22 1.19 16 6 C -0.08 0.75 8.59 22.33 0.19 0.94 16 7 C -0.07 0.63 5.28 -19.91 -0.11 0.52 16 8 C -0.06 0.70 3.85 -11.01 -0.04 0.66 16 9 H 0.11 -1.56 8.09 -2.39 -0.02 -1.58 16 10 C -0.14 1.09 7.25 31.12 0.23 1.32 16 11 C 0.11 -0.62 4.32 45.52 0.20 -0.42 16 12 H 0.09 -0.03 7.46 -2.39 -0.02 -0.05 16 13 N -0.70 3.88 5.26 -443.98 -2.33 1.54 16 14 C 0.59 1.97 7.79 86.45 0.67 2.64 16 15 O -0.57 -7.67 16.48 -4.34 -0.07 -7.74 16 16 C -0.07 -0.05 7.06 40.35 0.28 0.24 16 17 C -0.10 -0.52 10.59 22.57 0.24 -0.28 16 18 C -0.22 0.15 5.43 -20.12 -0.11 0.05 16 19 C -0.06 0.01 3.02 71.24 0.22 0.23 16 20 O -0.56 -2.47 12.88 -148.98 -1.92 -4.39 16 21 Si 0.79 -3.85 30.60 68.60 2.10 -1.75 16 22 C 0.06 -0.45 10.45 83.48 0.87 0.42 16 23 N -0.51 4.31 5.99 -183.62 -1.10 3.21 16 24 C -0.12 1.31 7.29 31.12 0.23 1.54 16 25 C -0.07 0.41 9.41 22.54 0.21 0.62 16 26 H 0.14 -0.97 8.06 -2.91 -0.02 -1.00 16 27 H 0.15 -1.84 8.06 -2.91 -0.02 -1.86 16 28 H 0.15 -1.82 6.66 -2.91 -0.02 -1.84 16 29 H 0.10 -0.92 6.31 -2.39 -0.02 -0.93 16 30 H 0.07 -0.35 8.14 -2.38 -0.02 -0.37 16 31 H 0.41 -5.29 7.83 -92.71 -0.73 -6.02 16 32 H 0.12 1.16 8.06 -2.91 -0.02 1.14 16 33 H 0.11 0.04 7.96 -2.39 -0.02 0.02 16 34 H 0.38 -0.79 8.70 -74.06 -0.64 -1.43 16 35 H -0.32 -1.50 7.11 99.48 0.71 -0.79 16 36 H -0.27 0.99 7.11 99.48 0.71 1.69 16 37 H 0.21 -3.18 6.21 -2.91 -0.02 -3.20 16 38 H 0.44 -7.18 8.19 -92.71 -0.76 -7.94 16 39 H 0.09 -1.05 8.14 -2.39 -0.02 -1.07 16 40 H 0.11 -1.20 7.71 -2.38 -0.02 -1.22 16 41 H 0.14 -1.26 8.05 -2.91 -0.02 -1.29 16 Total: 0.00 -29.47 358.79 0.81 -28.67 By element: Atomic # 1 Polarization: -26.75 SS G_CDS: -0.97 Total: -27.73 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 4.76 Total: 12.64 kcal Atomic # 7 Polarization: 3.39 SS G_CDS: -3.08 Total: 0.31 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -1.99 Total: -12.14 kcal Atomic # 14 Polarization: -3.85 SS G_CDS: 2.10 Total: -1.75 kcal Total: -29.47 0.81 -28.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_10543058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.582 kcal (2) G-P(sol) polarization free energy of solvation -29.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds