Wall clock time and date at job start Tue Mar 9 2021 12:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35452 * 125.56402 * 2 1 4 4 C 1.50697 * 126.06785 * 0.04515 * 3 2 1 5 5 O 1.42897 * 109.47265 * 245.28024 * 4 3 2 6 6 Si 1.86300 * 109.47356 * 125.27757 * 4 3 2 7 7 C 1.39832 * 107.86392 * 180.02562 * 3 2 1 8 8 C 1.50699 * 126.45842 * 179.97438 * 7 3 2 9 9 C 1.37873 * 107.08560 * 0.02562 * 7 3 2 10 10 C 1.46684 * 126.23109 * 180.02562 * 9 7 3 11 11 O 1.21694 * 119.99988 * 359.97438 * 10 9 7 12 12 N 1.34776 * 119.99838 * 179.97438 * 10 9 7 13 13 C 1.46491 * 120.00109 * 179.97438 * 12 10 9 14 14 H 1.09003 * 112.84780 * 23.80285 * 13 12 10 15 15 C 1.53784 * 113.61692 * 154.99749 * 13 12 10 16 16 C 1.53782 * 87.07841 * 89.11887 * 15 13 12 17 17 H 1.09001 * 113.61354 * 270.88630 * 16 15 13 18 18 C 1.50701 * 113.61391 * 140.06760 * 16 15 13 19 19 C 1.37931 * 119.92452 * 119.99312 * 18 16 15 20 20 C 1.39648 * 119.84715 * 179.97438 * 19 18 16 21 21 C 1.43193 * 120.15125 * 179.97438 * 20 19 18 22 22 N 9.93235 * 100.02624 * 194.47782 * 10 1 2 23 23 C 1.39621 * 119.69887 * 0.02562 * 20 19 18 24 24 C 1.37963 * 119.84301 * 359.97438 * 23 20 19 25 25 C 1.38341 * 120.15402 * 359.74509 * 24 23 20 26 26 C 1.53776 * 113.61702 * 252.49703 * 13 12 10 27 27 N 1.35537 * 125.56180 * 180.02562 * 2 1 3 28 28 H 1.08992 * 109.47420 * 275.07237 * 1 2 3 29 29 H 1.09001 * 109.47169 * 35.07326 * 1 2 3 30 30 H 1.09008 * 109.47164 * 155.06791 * 1 2 3 31 31 H 1.09010 * 109.47326 * 5.27950 * 4 3 2 32 32 H 0.96695 * 113.99920 * 300.00174 * 5 4 3 33 33 H 1.48493 * 110.00196 * 182.34848 * 6 4 3 34 34 H 1.48506 * 109.99948 * 303.67063 * 6 4 3 35 35 H 1.09003 * 109.47230 * 270.02158 * 8 7 3 36 36 H 1.09000 * 109.47114 * 30.01386 * 8 7 3 37 37 H 1.08998 * 109.47667 * 150.01637 * 8 7 3 38 38 H 0.96999 * 119.99894 * 359.97438 * 12 10 9 39 39 H 1.09002 * 113.61672 * 203.66545 * 15 13 12 40 40 H 1.08997 * 113.61039 * 334.48354 * 15 13 12 41 41 H 1.08003 * 120.07539 * 0.02562 * 19 18 16 42 42 H 1.07998 * 120.07475 * 179.97438 * 23 20 19 43 43 H 1.08001 * 119.92221 * 180.02562 * 24 23 20 44 44 H 1.08002 * 119.84646 * 180.25459 * 25 24 23 45 45 H 1.09007 * 113.61475 * 25.42910 * 26 13 12 46 46 H 1.09002 * 113.61799 * 156.33587 * 26 13 12 47 47 H 0.96999 * 125.68095 * 0.22383 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 1.8199 2.5320 0.0010 5 8 2.2037 3.1622 -1.2228 6 14 2.5879 3.4405 1.4348 7 6 3.6269 0.6767 -0.0006 8 6 4.8486 1.5591 -0.0014 9 6 3.6121 -0.7019 -0.0015 10 6 4.7860 -1.5815 -0.0019 11 8 5.9049 -1.1030 -0.0018 12 7 4.6253 -2.9197 -0.0023 13 6 5.7976 -3.7982 -0.0032 14 1 6.6876 -3.3167 0.4019 15 6 5.5251 -5.1898 0.5919 16 6 5.1266 -5.6316 -0.8261 17 1 4.0708 -5.4791 -1.0504 18 6 5.6075 -7.0139 -1.1852 19 6 4.6963 -7.9951 -1.5162 20 6 5.1437 -9.2753 -1.8492 21 6 4.2035 -10.2990 -2.1932 22 7 3.4565 -11.1130 -2.4584 23 6 6.5121 -9.5530 -1.8441 24 6 7.4124 -8.5621 -1.5111 25 6 6.9626 -7.2944 -1.1878 26 6 6.0358 -4.5062 -1.3473 27 7 2.2953 -1.1026 -0.0005 28 1 -0.3634 0.0909 1.0235 29 1 -0.3633 0.8411 -0.5905 30 1 -0.3634 -0.9320 -0.4332 31 1 0.7342 2.5544 0.0962 32 1 3.1586 3.1787 -1.3740 33 1 2.0837 4.8365 1.4802 34 1 2.2692 2.7436 2.7069 35 1 5.1424 1.7720 -1.0292 36 1 4.6223 2.4933 0.5127 37 1 5.6646 1.0505 0.5119 38 1 3.7334 -3.3011 -0.0020 39 1 6.4192 -5.6863 0.9688 40 1 4.6999 -5.2061 1.3039 41 1 3.6392 -7.7735 -1.5185 42 1 6.8648 -10.5411 -2.1002 43 1 8.4711 -8.7753 -1.5071 44 1 7.6720 -6.5213 -0.9319 45 1 5.6219 -3.9711 -2.2021 46 1 7.0696 -4.8159 -1.5006 47 1 1.9833 -2.0210 -0.0040 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_12297754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:50:59 Heat of formation + Delta-G solvation = 54.020211 kcal Electronic energy + Delta-G solvation = -29618.445290 eV Core-core repulsion = 25541.075208 eV Total energy + Delta-G solvation = -4077.370082 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.66453 -41.44963 -40.21623 -38.91066 -37.71638 -37.46704 -34.79726 -33.71380 -32.91661 -32.24566 -31.82387 -29.22445 -27.68640 -26.65402 -26.62268 -25.77555 -24.80924 -22.93269 -22.57529 -20.97635 -20.78806 -20.05105 -19.36063 -18.94602 -17.65299 -17.32220 -17.04601 -16.74308 -16.56237 -16.42541 -15.96220 -15.71038 -15.33792 -15.24704 -15.13371 -15.00921 -14.78194 -14.47284 -14.28705 -14.18195 -14.04709 -14.02995 -13.88341 -13.79030 -13.62744 -13.40489 -13.16306 -13.14376 -12.94708 -12.78562 -12.60330 -12.49575 -12.37875 -12.01322 -11.76109 -11.67608 -11.21004 -11.03544 -10.51990 -10.15596 -9.91777 -9.66976 -9.54686 -8.97887 -4.90992 -0.19957 0.36167 0.39263 1.23927 1.54622 1.54803 1.74531 1.89553 1.94668 2.01523 2.14074 2.30178 2.81558 2.84775 3.49401 3.68467 3.70589 3.73520 3.81670 3.86321 3.93111 4.01232 4.02224 4.14648 4.17845 4.19681 4.31763 4.36919 4.48359 4.51177 4.58295 4.68701 4.70866 4.77089 4.84233 4.88741 4.93949 4.97797 5.00070 5.04530 5.06192 5.08893 5.18074 5.18807 5.34237 5.36168 5.42307 5.51700 5.66693 5.72716 5.89285 5.90579 6.38029 6.38210 6.55040 6.79731 7.13932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.080 3.920 3 C -0.227 4.227 4 C -0.026 4.026 5 O -0.556 6.556 6 Si 0.733 3.267 7 C -0.074 4.074 8 C -0.094 4.094 9 C -0.075 4.075 10 C 0.593 3.407 11 O -0.556 6.556 12 N -0.703 5.703 13 C 0.114 3.886 14 H 0.093 0.907 15 C -0.125 4.125 16 C -0.067 4.067 17 H 0.108 0.892 18 C -0.074 4.074 19 C -0.068 4.068 20 C -0.046 4.046 21 C 0.276 3.724 22 N -0.474 5.474 23 C -0.076 4.076 24 C -0.116 4.116 25 C -0.082 4.082 26 C -0.141 4.141 27 N -0.523 5.523 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.388 0.612 33 H -0.290 1.290 34 H -0.294 1.294 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.407 0.593 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.155 0.845 44 H 0.151 0.849 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.365 -0.026 1.708 2.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.040 4.040 3 C -0.233 4.233 4 C -0.138 4.138 5 O -0.364 6.364 6 Si 0.639 3.361 7 C -0.083 4.083 8 C -0.150 4.150 9 C -0.187 4.187 10 C 0.382 3.618 11 O -0.435 6.435 12 N -0.354 5.354 13 C 0.009 3.991 14 H 0.111 0.889 15 C -0.163 4.163 16 C -0.085 4.085 17 H 0.127 0.873 18 C -0.075 4.075 19 C -0.089 4.089 20 C -0.050 4.050 21 C -0.038 4.038 22 N -0.150 5.150 23 C -0.097 4.097 24 C -0.134 4.134 25 C -0.101 4.101 26 C -0.179 4.179 27 N -0.121 5.121 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.237 0.763 33 H -0.218 1.218 34 H -0.221 1.221 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.243 0.757 39 H 0.127 0.873 40 H 0.102 0.898 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.173 0.827 44 H 0.169 0.831 45 H 0.084 0.916 46 H 0.125 0.875 47 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 1.239 -0.668 1.996 2.443 hybrid contribution -0.998 -0.957 -0.157 1.391 sum 0.241 -1.625 1.839 2.466 Atomic orbital electron populations 1.20599 0.85812 1.04947 1.04143 1.20670 0.94645 0.85533 1.03116 1.19589 0.92809 0.95474 1.15458 1.24250 1.02779 0.91077 0.95705 1.86446 1.30030 1.79923 1.39957 0.93813 0.91731 0.75884 0.74636 1.19998 0.95101 0.91844 1.01331 1.20532 0.93828 0.97275 1.03370 1.20000 0.83431 0.93944 1.21311 1.17076 0.87097 0.81980 0.75672 1.90817 1.25324 1.75633 1.51723 1.45430 1.10123 1.04738 1.75118 1.21913 0.89009 0.90247 0.97922 0.88903 1.23415 1.03776 0.93253 0.95834 1.21601 1.00540 0.89604 0.96769 0.87343 1.19681 0.93300 0.95068 0.99410 1.21197 1.00907 0.90420 0.96371 1.16104 0.90568 0.90289 1.08031 1.26186 0.92653 0.92726 0.92258 1.81328 1.11035 1.11488 1.11153 1.21418 0.90533 1.00987 0.96747 1.21392 1.01031 0.92398 0.98607 1.21606 0.95421 0.97315 0.95745 1.23583 1.01431 0.95878 0.97023 1.41757 1.04516 1.08991 1.56834 0.89417 0.89534 0.89312 0.87123 0.76265 1.21778 1.22060 0.89516 0.89836 0.90610 0.75693 0.87279 0.89785 0.84308 0.84277 0.82689 0.83148 0.91605 0.87540 0.72991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.66 9.90 71.24 0.70 1.36 16 2 C 0.08 -0.14 7.13 41.34 0.29 0.15 16 3 C -0.23 -0.30 4.66 -20.12 -0.09 -0.39 16 4 C -0.03 -0.03 2.86 71.23 0.20 0.17 16 5 O -0.56 -1.31 12.88 -148.98 -1.92 -3.23 16 6 Si 0.73 1.16 29.30 68.60 2.01 3.17 16 7 C -0.07 -0.16 5.82 -19.57 -0.11 -0.27 16 8 C -0.09 0.04 8.65 71.24 0.62 0.66 16 9 C -0.07 -0.07 7.06 40.35 0.28 0.21 16 10 C 0.59 1.15 7.79 86.45 0.67 1.82 16 11 O -0.56 -4.90 14.40 -4.33 -0.06 -4.97 16 12 N -0.70 3.78 5.26 -444.01 -2.33 1.45 16 13 C 0.11 -0.70 4.32 45.52 0.20 -0.51 16 14 H 0.09 -0.19 7.46 -2.39 -0.02 -0.21 16 15 C -0.12 1.30 7.29 31.12 0.23 1.52 16 16 C -0.07 0.68 3.85 -11.01 -0.04 0.64 16 17 H 0.11 -1.31 8.09 -2.39 -0.02 -1.33 16 18 C -0.07 0.59 5.28 -19.90 -0.11 0.48 16 19 C -0.07 0.37 9.41 22.54 0.21 0.58 16 20 C -0.05 0.10 5.73 -21.36 -0.12 -0.02 16 21 C 0.28 1.17 15.33 88.33 1.35 2.52 16 22 N -0.47 -5.09 18.54 19.00 0.35 -4.74 16 23 C -0.08 0.39 9.76 22.54 0.22 0.61 16 24 C -0.12 0.96 10.03 22.23 0.22 1.18 16 25 C -0.08 0.74 8.62 22.33 0.19 0.93 16 26 C -0.14 1.10 7.25 31.12 0.23 1.33 16 27 N -0.52 2.32 5.99 -171.93 -1.03 1.29 16 28 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 29 H 0.09 -0.50 7.43 -2.39 -0.02 -0.52 16 30 H 0.09 -0.91 8.14 -2.38 -0.02 -0.93 16 31 H 0.11 0.03 6.77 -2.38 -0.02 0.02 16 32 H 0.39 -1.55 7.85 -74.06 -0.58 -2.13 16 33 H -0.29 -2.22 7.11 99.48 0.71 -1.51 16 34 H -0.29 -2.23 7.11 99.48 0.71 -1.52 16 35 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 36 H 0.08 -0.39 4.33 -2.39 -0.01 -0.40 16 37 H 0.08 0.24 6.48 -2.39 -0.02 0.23 16 38 H 0.41 -4.51 7.83 -92.71 -0.73 -5.24 16 39 H 0.11 -1.23 7.73 -2.39 -0.02 -1.25 16 40 H 0.08 -0.93 8.14 -2.39 -0.02 -0.95 16 41 H 0.14 -1.05 8.05 -2.91 -0.02 -1.08 16 42 H 0.14 -0.96 8.06 -2.91 -0.02 -0.98 16 43 H 0.16 -1.91 8.06 -2.91 -0.02 -1.93 16 44 H 0.15 -1.91 6.63 -2.91 -0.02 -1.93 16 45 H 0.07 -0.33 8.14 -2.38 -0.02 -0.35 16 46 H 0.11 -1.00 6.30 -2.39 -0.02 -1.02 16 47 H 0.43 -4.91 8.19 -92.71 -0.76 -5.67 16 Total: 0.00 -24.87 391.29 1.20 -23.67 By element: Atomic # 1 Polarization: -28.66 SS G_CDS: -0.97 Total: -29.63 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 5.15 Total: 12.99 kcal Atomic # 7 Polarization: 1.01 SS G_CDS: -3.01 Total: -2.01 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -1.98 Total: -8.19 kcal Atomic # 14 Polarization: 1.16 SS G_CDS: 2.01 Total: 3.17 kcal Total: -24.87 1.20 -23.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_12297754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.689 kcal (2) G-P(sol) polarization free energy of solvation -24.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds