Wall clock time and date at job start Tue Mar 9 2021 12:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39608 * 120.14639 * 175.13798 * 3 2 1 5 5 C 1.37974 * 119.84372 * 179.97438 * 4 3 2 6 6 C 1.38342 * 120.14875 * 0.27850 * 5 4 3 7 7 C 1.38385 * 120.30524 * 359.44605 * 6 5 4 8 8 C 1.50701 * 119.92116 * 180.25592 * 7 6 5 9 9 H 1.08999 * 112.84886 * 191.49031 * 8 7 6 10 10 C 1.53776 * 113.61614 * 322.79706 * 8 7 6 11 11 C 1.53787 * 87.08112 * 139.98387 * 10 8 7 12 12 H 1.09000 * 113.60736 * 220.02102 * 11 10 8 13 13 N 1.46490 * 113.61342 * 89.11740 * 11 10 8 14 14 C 1.34775 * 120.00299 * 107.50453 * 13 11 10 15 15 O 1.21568 * 119.99893 * 359.97438 * 14 13 11 16 16 C 1.47695 * 120.00356 * 179.97438 * 14 13 11 17 17 C 1.39823 * 120.16587 * 179.97438 * 16 14 13 18 18 F 1.35097 * 120.11032 * 359.97438 * 17 16 14 19 19 C 1.38321 * 119.77804 * 180.02562 * 17 16 14 20 20 C 1.38204 * 120.11606 * 359.97438 * 19 17 16 21 21 C 1.38458 * 120.34076 * 359.97438 * 20 19 17 22 22 C 1.50698 * 119.88813 * 180.02562 * 21 20 19 23 23 O 1.42906 * 109.47066 * 244.99887 * 22 21 20 24 24 Si 1.86296 * 109.47464 * 5.00026 * 22 21 20 25 25 C 1.37853 * 120.21694 * 359.76010 * 21 20 19 26 26 C 1.53777 * 87.07898 * 334.56576 * 11 10 8 27 27 C 1.37922 * 120.15281 * 0.55119 * 7 6 5 28 28 H 1.08000 * 120.08035 * 359.95635 * 4 3 2 29 29 H 1.08002 * 119.92160 * 179.97438 * 5 4 3 30 30 H 1.08005 * 119.84349 * 179.71729 * 6 5 4 31 31 H 1.09005 * 113.61228 * 254.53185 * 10 8 7 32 32 H 1.08994 * 113.61444 * 25.43465 * 10 8 7 33 33 H 0.96999 * 120.00284 * 287.49971 * 13 11 10 34 34 H 1.08000 * 119.94359 * 180.02562 * 19 17 16 35 35 H 1.07999 * 119.83040 * 179.97438 * 20 19 17 36 36 H 1.09002 * 109.47102 * 125.00157 * 22 21 20 37 37 H 0.96699 * 113.99793 * 60.00061 * 23 22 21 38 38 H 1.48500 * 110.00113 * 58.67894 * 24 22 21 39 39 H 1.48506 * 110.00064 * 180.02562 * 24 22 21 40 40 H 1.07997 * 120.06187 * 180.25445 * 25 21 20 41 41 H 1.08994 * 113.61592 * 270.88485 * 26 11 10 42 42 H 1.09005 * 113.61411 * 139.98025 * 26 11 10 43 43 H 1.07997 * 120.07946 * 179.75021 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2686 1.2039 -0.1023 5 6 4.6484 1.1973 -0.1012 6 6 5.3374 0.0015 -0.0047 7 6 4.6492 -1.1943 0.1027 8 6 5.4086 -2.4913 0.2131 9 1 4.7708 -3.3668 0.0914 10 6 6.6849 -2.5327 -0.6437 11 6 7.3589 -3.2536 0.5358 12 1 8.3842 -2.9307 0.7164 13 7 7.2197 -4.7111 0.4896 14 6 8.2831 -5.4803 0.1833 15 8 9.3578 -4.9645 -0.0553 16 6 8.1429 -6.9499 0.1373 17 6 9.2438 -7.7511 -0.1807 18 9 10.4404 -7.1837 -0.4478 19 6 9.1034 -9.1265 -0.2220 20 6 7.8792 -9.7070 0.0507 21 6 6.7861 -8.9184 0.3672 22 6 5.4561 -9.5622 0.6633 23 8 4.5109 -9.1861 -0.3404 24 14 5.6507 -11.4149 0.6699 25 6 6.9117 -7.5465 0.4176 26 6 6.3270 -2.5646 1.4443 27 6 3.2700 -1.2023 0.1028 28 1 2.7319 2.1376 -0.1825 29 1 5.1916 2.1273 -0.1807 30 1 6.4174 0.0017 -0.0089 31 1 6.5912 -3.1504 -1.5370 32 1 7.1039 -1.5481 -0.8507 33 1 6.3622 -5.1227 0.6797 34 1 9.9521 -9.7480 -0.4669 35 1 7.7746 -10.7814 0.0167 36 1 5.1012 -9.2306 1.6391 37 1 4.7624 -9.4498 -1.2361 38 1 6.6548 -11.8165 1.6877 39 1 4.3458 -12.0617 0.9602 40 1 6.0585 -6.9340 0.6688 41 1 6.6483 -1.5886 1.8081 42 1 5.9445 -3.2079 2.2367 43 1 2.7342 -2.1365 0.1827 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_12335834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:51:06 Heat of formation + Delta-G solvation = 6.624077 kcal Electronic energy + Delta-G solvation = -29262.445983 eV Core-core repulsion = 24961.841683 eV Total energy + Delta-G solvation = -4300.604300 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.121 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.00449 -41.76811 -40.89309 -39.99594 -38.96674 -37.48156 -37.39575 -34.84368 -32.81044 -32.29381 -32.23804 -31.58746 -26.67417 -26.64771 -26.51860 -25.36311 -24.75157 -23.29211 -22.70737 -21.68764 -20.75511 -19.20335 -19.02969 -18.31035 -18.24148 -17.37062 -17.25525 -16.96368 -16.89955 -16.53968 -16.20108 -16.01789 -15.82806 -15.66664 -15.62925 -15.17861 -15.07533 -14.78195 -14.55899 -14.37007 -14.31564 -14.17457 -14.01798 -13.78403 -13.67931 -13.43015 -13.21128 -12.96452 -12.84153 -12.78901 -12.49112 -12.16701 -11.87294 -11.77031 -11.68922 -11.22592 -11.19710 -10.44664 -10.40015 -10.10325 -9.91066 -9.81877 -9.66268 -4.96134 -0.49177 -0.19160 -0.02349 0.37511 1.32361 1.56149 1.60205 1.68056 1.90567 1.93464 2.03293 2.48158 2.82474 2.85595 3.05767 3.37102 3.45607 3.49516 3.59480 3.67910 3.70707 3.74973 3.93237 4.00429 4.01955 4.11016 4.18314 4.19738 4.32441 4.44036 4.51191 4.58468 4.67215 4.76152 4.78776 4.81827 4.83303 4.90532 4.95920 5.00240 5.05458 5.07538 5.14905 5.17456 5.34972 5.41963 5.49868 5.60532 5.66969 5.89706 6.36405 6.39528 6.80350 7.05801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.276 3.724 3 C -0.046 4.046 4 C -0.076 4.076 5 C -0.117 4.117 6 C -0.083 4.083 7 C -0.074 4.074 8 C -0.066 4.066 9 H 0.111 0.889 10 C -0.141 4.141 11 C 0.109 3.891 12 H 0.087 0.913 13 N -0.692 5.692 14 C 0.557 3.443 15 O -0.570 6.570 16 C -0.189 4.189 17 C 0.133 3.867 18 F -0.136 7.136 19 C -0.153 4.153 20 C -0.050 4.050 21 C -0.135 4.135 22 C -0.065 4.065 23 O -0.551 6.551 24 Si 0.767 3.233 25 C -0.025 4.025 26 C -0.124 4.124 27 C -0.067 4.067 28 H 0.140 0.860 29 H 0.155 0.845 30 H 0.149 0.851 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.414 0.586 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.119 0.881 37 H 0.397 0.603 38 H -0.282 1.282 39 H -0.304 1.304 40 H 0.158 0.842 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.874 -3.534 -0.544 4.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.038 4.038 3 C -0.049 4.049 4 C -0.096 4.096 5 C -0.134 4.134 6 C -0.102 4.102 7 C -0.074 4.074 8 C -0.084 4.084 9 H 0.130 0.870 10 C -0.179 4.179 11 C 0.004 3.996 12 H 0.105 0.895 13 N -0.344 5.344 14 C 0.345 3.655 15 O -0.450 6.450 16 C -0.193 4.193 17 C 0.113 3.887 18 F -0.115 7.115 19 C -0.171 4.171 20 C -0.067 4.067 21 C -0.135 4.135 22 C -0.175 4.175 23 O -0.359 6.359 24 Si 0.674 3.326 25 C -0.043 4.043 26 C -0.162 4.162 27 C -0.088 4.088 28 H 0.158 0.842 29 H 0.173 0.827 30 H 0.167 0.833 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.253 0.747 34 H 0.185 0.815 35 H 0.185 0.815 36 H 0.136 0.864 37 H 0.248 0.752 38 H -0.209 1.209 39 H -0.232 1.232 40 H 0.176 0.824 41 H 0.128 0.872 42 H 0.105 0.895 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.523 -3.609 0.252 3.656 hybrid contribution 0.188 0.604 0.338 0.718 sum 0.712 -3.005 0.590 3.144 Atomic orbital electron populations 1.81319 1.13785 1.08892 1.10951 1.26165 0.93091 0.92334 0.92205 1.16100 0.82873 0.96230 1.09732 1.21414 0.95173 0.96595 0.96441 1.21384 0.93118 0.99676 0.99269 1.21597 1.01645 0.91481 0.95453 1.19662 0.92360 0.95520 0.99873 1.21605 0.94693 0.95125 0.96994 0.87040 1.23585 0.95329 1.01880 0.97126 1.21962 1.00494 0.78879 0.98305 0.89470 1.45442 1.12493 1.06513 1.69970 1.18290 0.84023 0.86796 0.76392 1.90842 1.28364 1.75411 1.50359 1.20054 0.95463 0.92878 1.10859 1.18215 0.80261 0.92216 0.97999 1.91560 1.43531 1.85790 1.90596 1.21397 1.00922 0.91523 1.03265 1.21377 0.90682 1.01111 0.93578 1.20465 0.96809 0.93801 1.02470 1.25078 0.86749 1.10862 0.94838 1.86500 1.45832 1.83275 1.20330 0.93864 0.77513 0.72861 0.88392 1.21193 0.94694 0.95056 0.93401 1.23415 0.94277 1.02191 0.96280 1.21203 0.94095 0.96711 0.96770 0.84220 0.82729 0.83316 0.91445 0.87574 0.74722 0.81529 0.81470 0.86367 0.75241 1.20886 1.23186 0.82423 0.87240 0.89517 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -5.36 18.54 19.01 0.35 -5.01 16 2 C 0.28 1.35 15.33 88.33 1.35 2.70 16 3 C -0.05 0.06 5.73 -21.36 -0.12 -0.06 16 4 C -0.08 0.33 9.76 22.54 0.22 0.55 16 5 C -0.12 0.86 10.03 22.23 0.22 1.08 16 6 C -0.08 0.65 8.62 22.33 0.19 0.85 16 7 C -0.07 0.50 5.28 -19.90 -0.11 0.39 16 8 C -0.07 0.57 3.85 -11.01 -0.04 0.53 16 9 H 0.11 -1.18 8.09 -2.39 -0.02 -1.20 16 10 C -0.14 0.83 7.25 31.12 0.23 1.06 16 11 C 0.11 -0.39 4.32 45.52 0.20 -0.20 16 12 H 0.09 0.11 7.47 -2.39 -0.02 0.09 16 13 N -0.69 1.92 5.21 -443.07 -2.31 -0.39 16 14 C 0.56 2.90 7.77 86.74 0.67 3.57 16 15 O -0.57 -8.40 14.94 -3.93 -0.06 -8.46 16 16 C -0.19 -0.30 5.88 -20.05 -0.12 -0.42 16 17 C 0.13 0.49 7.29 22.67 0.17 0.66 16 18 F -0.14 -1.48 15.55 44.97 0.70 -0.78 16 19 C -0.15 0.54 10.01 22.28 0.22 0.76 16 20 C -0.05 0.38 8.66 22.31 0.19 0.58 16 21 C -0.13 0.93 5.34 -19.90 -0.11 0.82 16 22 C -0.06 0.51 2.80 71.24 0.20 0.71 16 23 O -0.55 3.88 12.83 -148.98 -1.91 1.97 16 24 Si 0.77 -5.98 29.79 68.60 2.04 -3.93 16 25 C -0.02 0.12 9.17 22.52 0.21 0.33 16 26 C -0.12 1.07 7.29 31.12 0.23 1.29 16 27 C -0.07 0.30 9.41 22.54 0.21 0.51 16 28 H 0.14 -0.88 8.06 -2.91 -0.02 -0.90 16 29 H 0.16 -1.76 8.06 -2.91 -0.02 -1.78 16 30 H 0.15 -1.68 6.63 -2.91 -0.02 -1.70 16 31 H 0.07 -0.23 8.14 -2.38 -0.02 -0.25 16 32 H 0.11 -0.80 6.29 -2.39 -0.02 -0.82 16 33 H 0.41 -3.65 6.73 -92.71 -0.62 -4.27 16 34 H 0.17 -1.26 8.06 -2.91 -0.02 -1.28 16 35 H 0.17 -2.22 4.88 -2.91 -0.01 -2.23 16 36 H 0.12 -0.91 7.96 -2.39 -0.02 -0.93 16 37 H 0.40 -5.76 8.70 -74.06 -0.64 -6.40 16 38 H -0.28 0.85 7.11 99.48 0.71 1.56 16 39 H -0.30 -0.36 7.11 99.48 0.71 0.34 16 40 H 0.16 -1.55 6.41 -2.91 -0.02 -1.57 16 41 H 0.11 -1.06 7.73 -2.39 -0.02 -1.08 16 42 H 0.09 -0.83 8.14 -2.38 -0.02 -0.85 16 43 H 0.14 -0.92 8.05 -2.91 -0.02 -0.94 16 Total: 0.00 -27.78 374.27 2.70 -25.08 By element: Atomic # 1 Polarization: -24.08 SS G_CDS: -0.13 Total: -24.21 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 4.02 Total: 15.72 kcal Atomic # 7 Polarization: -3.43 SS G_CDS: -1.96 Total: -5.39 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -1.97 Total: -6.49 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.70 Total: -0.78 kcal Atomic # 14 Polarization: -5.98 SS G_CDS: 2.04 Total: -3.93 kcal Total: -27.78 2.70 -25.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_12335834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.703 kcal (2) G-P(sol) polarization free energy of solvation -27.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds