Wall clock time and date at job start Tue Mar 9 2021 12:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35660 * 116.99678 * 2 1 4 4 C 1.40141 * 120.14700 * 179.97438 * 3 2 1 5 5 C 1.47534 * 120.19357 * 359.96057 * 4 3 2 6 6 O 1.21586 * 119.99809 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99888 * 179.97438 * 5 4 3 8 8 C 1.46501 * 120.00067 * 179.97438 * 7 5 4 9 9 H 1.08997 * 112.84591 * 23.80003 * 8 7 5 10 10 C 1.53774 * 113.61676 * 154.99938 * 8 7 5 11 11 C 1.53778 * 87.08391 * 89.11518 * 10 8 7 12 12 H 1.09002 * 113.61371 * 270.80397 * 11 10 8 13 13 C 1.50697 * 113.61715 * 139.98088 * 11 10 8 14 14 C 1.37919 * 119.92608 * 119.98032 * 13 11 10 15 15 C 1.39653 * 119.84754 * 180.02562 * 14 13 11 16 16 C 1.43204 * 120.14808 * 180.02562 * 15 14 13 17 17 N 9.93339 * 165.20386 * 254.72336 * 5 1 2 18 18 C 1.39607 * 119.69761 * 359.72866 * 15 14 13 19 19 C 1.37966 * 119.84915 * 0.54766 * 18 15 14 20 20 C 1.38346 * 120.14729 * 359.44787 * 19 18 15 21 21 C 1.53777 * 113.61339 * 252.49609 * 8 7 5 22 22 C 1.39714 * 119.61264 * 180.23090 * 4 3 2 23 23 C 1.37785 * 119.90572 * 359.51329 * 22 4 3 24 24 C 1.50703 * 119.84857 * 180.22842 * 23 22 4 25 25 O 1.42908 * 109.46954 * 65.24006 * 24 23 22 26 26 Si 1.86301 * 109.47309 * 185.23750 * 24 23 22 27 27 C 1.38551 * 120.30648 * 0.47363 * 23 22 4 28 28 C 1.38056 * 120.38213 * 359.77804 * 27 23 22 29 29 H 1.09000 * 109.47136 * 60.00469 * 1 2 3 30 30 H 1.09005 * 109.46741 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47559 * 300.00247 * 1 2 3 32 32 H 0.97003 * 120.00223 * 359.97438 * 7 5 4 33 33 H 1.09001 * 113.61671 * 334.56761 * 10 8 7 34 34 H 1.09001 * 113.61759 * 203.67002 * 10 8 7 35 35 H 1.08003 * 120.07801 * 0.04505 * 14 13 11 36 36 H 1.08004 * 120.07985 * 180.27299 * 18 15 14 37 37 H 1.08002 * 119.93050 * 179.73249 * 19 18 15 38 38 H 1.08002 * 119.84561 * 180.25896 * 20 19 18 39 39 H 1.09006 * 113.61002 * 156.33086 * 21 8 7 40 40 H 1.08999 * 113.61435 * 25.43626 * 21 8 7 41 41 H 1.07995 * 120.04342 * 179.73297 * 22 4 3 42 42 H 1.08999 * 109.47609 * 305.24591 * 24 23 22 43 43 H 0.96700 * 113.99953 * 59.99506 * 25 24 23 44 44 H 1.48503 * 109.99924 * 180.02562 * 26 24 23 45 45 H 1.48500 * 110.00081 * 301.32299 * 26 24 23 46 46 H 1.07990 * 119.80784 * 179.75990 * 27 23 22 47 47 H 1.08006 * 119.95321 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4441 1.2858 0.0005 5 6 4.2550 0.0533 0.0020 6 8 3.7095 -1.0333 0.0032 7 7 5.6005 0.1319 0.0020 8 6 6.4058 -1.0919 0.0040 9 1 5.8707 -1.9512 -0.4000 10 6 7.8112 -0.9055 -0.5916 11 6 8.2769 -0.5332 0.8258 12 1 8.1907 0.5303 1.0485 13 6 9.6265 -1.0989 1.1860 14 6 10.6626 -0.2503 1.5153 15 6 11.9127 -0.7764 1.8483 16 6 12.9929 0.0988 2.1919 17 7 13.8487 0.8419 2.4536 18 6 12.1028 -2.1594 1.8507 19 6 11.0592 -2.9966 1.5136 20 6 9.8234 -2.4687 1.1849 21 6 7.0983 -1.3714 1.3483 22 6 4.0666 2.5365 0.0054 23 6 3.3036 3.6838 -0.0005 24 6 3.9765 5.0322 -0.0004 25 8 4.6995 5.2038 -1.2211 26 14 2.6881 6.3693 0.1513 27 6 1.9204 3.6034 -0.0013 28 6 1.2924 2.3740 -0.0009 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 6.0357 0.9989 0.0007 33 1 7.8782 -0.0828 -1.3034 34 1 8.2520 -1.8288 -0.9677 35 1 10.5075 0.8185 1.5161 36 1 13.0658 -2.5730 2.1115 37 1 11.2060 -4.0665 1.5109 38 1 9.0087 -3.1287 0.9258 39 1 7.3441 -2.4221 1.5026 40 1 6.5896 -0.9248 2.2026 41 1 5.1445 2.6040 0.0102 42 1 4.6656 5.0944 0.8418 43 1 4.1482 5.1600 -2.0143 44 1 3.3389 7.7041 0.1519 45 1 1.7238 6.2754 -0.9741 46 1 1.3301 4.5078 -0.0021 47 1 0.2137 2.3194 -0.0012 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_12496546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:51:48 Heat of formation + Delta-G solvation = 16.653555 kcal Electronic energy + Delta-G solvation = -31232.108884 eV Core-core repulsion = 26927.173660 eV Total energy + Delta-G solvation = -4304.935224 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.90060 -41.23468 -40.10063 -39.20981 -38.80872 -37.21460 -36.94619 -34.66345 -32.75609 -32.20856 -31.89923 -31.53393 -28.51845 -26.63814 -26.46793 -26.14899 -25.22609 -24.64987 -22.96593 -22.54580 -21.55461 -20.70847 -19.44478 -18.99724 -18.41140 -18.15116 -17.30777 -17.19763 -16.86315 -16.83557 -16.46682 -16.16074 -15.96833 -15.93756 -15.81790 -15.60062 -15.07799 -14.96610 -14.80011 -14.59513 -14.51488 -14.29840 -14.19031 -13.90577 -13.60231 -13.56621 -13.46123 -13.34266 -13.09592 -12.89411 -12.75393 -12.48555 -12.41962 -12.20437 -12.02688 -11.73733 -11.65182 -11.64385 -11.18750 -11.01994 -10.53689 -10.24932 -9.98722 -9.89104 -9.64669 -9.28398 -4.89083 -0.24841 -0.21918 0.23180 0.38564 1.34200 1.40380 1.61294 1.78539 1.81141 1.99860 2.09953 2.28674 2.69066 2.78689 2.84179 3.43207 3.50940 3.58689 3.65342 3.71730 3.75477 3.79459 3.94586 4.00294 4.03674 4.16350 4.20159 4.21848 4.32244 4.33332 4.37595 4.41348 4.52531 4.63701 4.68484 4.72097 4.76252 4.79623 4.85226 4.90822 4.96181 5.02819 5.07119 5.10519 5.12671 5.22702 5.29291 5.35823 5.43662 5.55351 5.58070 5.71052 5.90468 6.31708 6.38745 6.52605 6.54425 7.24715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.312 6.312 3 C 0.172 3.828 4 C -0.196 4.196 5 C 0.560 3.440 6 O -0.563 6.563 7 N -0.700 5.700 8 C 0.112 3.888 9 H 0.086 0.914 10 C -0.125 4.125 11 C -0.066 4.066 12 H 0.110 0.890 13 C -0.074 4.074 14 C -0.067 4.067 15 C -0.041 4.041 16 C 0.271 3.729 17 N -0.478 5.478 18 C -0.074 4.074 19 C -0.116 4.116 20 C -0.082 4.082 21 C -0.140 4.140 22 C -0.015 4.015 23 C -0.164 4.164 24 C -0.072 4.072 25 O -0.546 6.546 26 Si 0.759 3.241 27 C -0.045 4.045 28 C -0.213 4.213 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.411 0.589 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.152 0.848 42 H 0.131 0.869 43 H 0.386 0.614 44 H -0.307 1.307 45 H -0.280 1.280 46 H 0.154 0.846 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.216 -0.625 -0.125 6.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.224 6.224 3 C 0.123 3.877 4 C -0.200 4.200 5 C 0.349 3.651 6 O -0.442 6.442 7 N -0.353 5.353 8 C 0.006 3.994 9 H 0.104 0.896 10 C -0.163 4.163 11 C -0.084 4.084 12 H 0.128 0.872 13 C -0.074 4.074 14 C -0.088 4.088 15 C -0.045 4.045 16 C -0.042 4.042 17 N -0.155 5.155 18 C -0.095 4.095 19 C -0.134 4.134 20 C -0.101 4.101 21 C -0.179 4.179 22 C -0.034 4.034 23 C -0.165 4.165 24 C -0.181 4.181 25 O -0.355 6.355 26 Si 0.665 3.335 27 C -0.062 4.062 28 C -0.231 4.231 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.093 0.907 32 H 0.249 0.751 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.174 0.826 38 H 0.167 0.833 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.169 0.831 42 H 0.149 0.851 43 H 0.235 0.765 44 H -0.236 1.236 45 H -0.206 1.206 46 H 0.172 0.828 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.059 0.284 0.324 5.077 hybrid contribution 0.128 0.029 -1.157 1.164 sum -4.931 0.313 -0.833 5.011 Atomic orbital electron populations 1.23443 0.76577 1.05477 1.02800 1.86337 1.23142 1.26360 1.86531 1.19421 0.91400 0.85512 0.91350 1.19419 0.91110 0.94056 1.15439 1.18249 0.82630 0.88541 0.75726 1.90811 1.72456 1.30267 1.50654 1.45489 1.04905 1.09994 1.74900 1.21898 0.91584 0.87797 0.98087 0.89621 1.23415 0.92834 1.04048 0.95991 1.21592 0.89713 1.00506 0.96612 0.87212 1.19661 0.94786 0.93515 0.99416 1.21194 0.90322 1.00960 0.96329 1.16040 0.89171 0.91250 1.08017 1.27303 0.92723 0.92307 0.91829 1.82450 1.11511 1.09753 1.11757 1.21430 1.00813 0.90648 0.96587 1.21392 0.92074 1.01349 0.98592 1.21606 0.97943 0.94791 0.95734 1.23576 0.95556 1.01744 0.96979 1.21119 1.00739 0.89118 0.92377 1.20148 0.93739 0.95875 1.06731 1.25078 1.04441 0.98647 0.89919 1.86584 1.38411 1.94253 1.16215 0.94181 0.76852 0.74160 0.88308 1.21305 0.93934 0.97926 0.93078 1.21457 1.01727 0.90948 1.09010 0.91085 0.87417 0.90712 0.75112 0.89797 0.87283 0.84327 0.84061 0.82628 0.83282 0.87608 0.91534 0.83059 0.85129 0.76452 1.23580 1.20622 0.82845 0.82180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.09 16 2 O -0.31 -2.27 8.57 -68.84 -0.59 -2.86 16 3 C 0.17 0.69 6.70 22.84 0.15 0.85 16 4 C -0.20 -0.68 5.89 -20.01 -0.12 -0.80 16 5 C 0.56 3.74 7.76 86.70 0.67 4.42 16 6 O -0.56 -8.68 14.76 16.93 0.25 -8.43 16 7 N -0.70 0.73 5.21 -443.22 -2.31 -1.58 16 8 C 0.11 -0.26 4.32 45.51 0.20 -0.07 16 9 H 0.09 0.21 7.46 -2.39 -0.02 0.19 16 10 C -0.13 0.91 7.29 31.12 0.23 1.14 16 11 C -0.07 0.50 3.85 -11.02 -0.04 0.46 16 12 H 0.11 -1.02 8.09 -2.39 -0.02 -1.04 16 13 C -0.07 0.45 5.28 -19.91 -0.11 0.34 16 14 C -0.07 0.25 9.41 22.54 0.21 0.47 16 15 C -0.04 0.04 5.73 -21.36 -0.12 -0.08 16 16 C 0.27 1.46 15.42 88.01 1.36 2.81 16 17 N -0.48 -5.78 18.72 19.38 0.36 -5.41 16 18 C -0.07 0.32 9.76 22.54 0.22 0.54 16 19 C -0.12 0.84 10.03 22.23 0.22 1.06 16 20 C -0.08 0.61 8.60 22.33 0.19 0.80 16 21 C -0.14 0.70 7.25 31.12 0.23 0.92 16 22 C -0.01 0.04 9.16 22.52 0.21 0.24 16 23 C -0.16 0.66 5.35 -19.90 -0.11 0.56 16 24 C -0.07 0.37 2.79 71.24 0.20 0.57 16 25 O -0.55 1.12 12.83 -148.98 -1.91 -0.79 16 26 Si 0.76 -4.10 29.87 68.60 2.05 -2.06 16 27 C -0.04 0.21 8.65 22.30 0.19 0.41 16 28 C -0.21 0.49 9.03 22.34 0.20 0.69 16 29 H 0.07 -0.39 7.66 -2.39 -0.02 -0.40 16 30 H 0.11 -0.38 8.14 -2.38 -0.02 -0.40 16 31 H 0.07 -0.44 7.66 -2.39 -0.02 -0.46 16 32 H 0.41 -2.68 6.73 -92.71 -0.62 -3.30 16 33 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H 0.11 -0.95 7.72 -2.39 -0.02 -0.96 16 35 H 0.14 -0.79 8.05 -2.91 -0.02 -0.82 16 36 H 0.14 -0.90 8.06 -2.91 -0.02 -0.92 16 37 H 0.16 -1.77 8.06 -2.91 -0.02 -1.79 16 38 H 0.15 -1.62 6.64 -2.91 -0.02 -1.64 16 39 H 0.11 -0.72 6.30 -2.38 -0.02 -0.74 16 40 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.15 -1.04 6.40 -2.91 -0.02 -1.06 16 42 H 0.13 -0.97 7.96 -2.39 -0.02 -0.99 16 43 H 0.39 -2.70 8.70 -74.06 -0.64 -3.34 16 44 H -0.31 -1.05 7.11 99.48 0.71 -0.34 16 45 H -0.28 0.58 7.00 99.48 0.70 1.27 16 46 H 0.15 -1.41 4.81 -2.92 -0.01 -1.42 16 47 H 0.16 -1.14 6.30 -2.91 -0.02 -1.16 16 Total: 0.00 -27.64 397.21 2.76 -24.88 By element: Atomic # 1 Polarization: -19.98 SS G_CDS: -0.19 Total: -20.16 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: 5.10 Total: 16.41 kcal Atomic # 7 Polarization: -5.05 SS G_CDS: -1.95 Total: -7.00 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -2.25 Total: -12.08 kcal Atomic # 14 Polarization: -4.10 SS G_CDS: 2.05 Total: -2.06 kcal Total: -27.64 2.76 -24.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_12496546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.535 kcal (2) G-P(sol) polarization free energy of solvation -27.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds