Wall clock time and date at job start Tue Mar 9 2021 12:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39279 * 121.03306 * 2 1 4 4 C 1.46495 * 134.20425 * 359.94620 * 3 2 1 5 5 C 1.50698 * 126.59761 * 0.02562 * 4 3 2 6 6 O 1.42901 * 109.47181 * 284.99192 * 5 4 3 7 7 Si 1.86304 * 109.46991 * 164.99545 * 5 4 3 8 8 C 1.34181 * 106.80415 * 180.26827 * 4 3 2 9 9 N 1.36950 * 109.95117 * 359.60617 * 8 4 3 10 10 C 1.37160 * 110.11144 * 0.41140 * 9 8 4 11 11 N 1.32820 * 132.96007 * 179.72818 * 10 9 8 12 12 C 1.31309 * 121.88878 * 180.02562 * 11 10 9 13 13 C 1.39755 * 121.02935 * 179.97438 * 2 1 3 14 14 C 1.47663 * 120.45176 * 359.97438 * 13 2 1 15 15 O 1.21578 * 120.00261 * 5.99629 * 14 13 2 16 16 N 1.34777 * 120.00057 * 185.99396 * 14 13 2 17 17 C 1.46506 * 119.99963 * 180.02562 * 16 14 13 18 18 H 1.08992 * 112.85129 * 25.33314 * 17 16 14 19 19 C 1.53781 * 113.61086 * 156.52934 * 17 16 14 20 20 C 1.53780 * 87.08264 * 89.11309 * 19 17 16 21 21 H 1.08994 * 113.61876 * 270.88518 * 20 19 17 22 22 C 1.50697 * 113.61369 * 140.05945 * 20 19 17 23 23 C 1.37935 * 119.92270 * 119.72782 * 22 20 19 24 24 C 1.39655 * 119.84313 * 179.77214 * 23 22 20 25 25 C 1.43199 * 120.14452 * 180.25520 * 24 23 22 26 26 N 9.92440 * 159.28227 * 89.98511 * 14 1 2 27 27 C 1.39610 * 119.70051 * 0.50307 * 24 23 22 28 28 C 1.37965 * 119.84647 * 359.74793 * 27 24 23 29 29 C 1.38346 * 120.15156 * 0.02562 * 28 27 24 30 30 C 1.53777 * 113.61006 * 254.13433 * 17 16 14 31 31 H 1.09004 * 109.46828 * 96.28727 * 1 2 3 32 32 H 1.08993 * 109.47252 * 216.28649 * 1 2 3 33 33 H 1.09001 * 109.46607 * 336.29234 * 1 2 3 34 34 H 1.09001 * 109.47535 * 44.99792 * 5 4 3 35 35 H 0.96704 * 113.99895 * 300.00381 * 6 5 4 36 36 H 1.48506 * 109.99755 * 179.97438 * 7 5 4 37 37 H 1.48494 * 110.00120 * 301.31874 * 7 5 4 38 38 H 1.08001 * 125.02479 * 179.76479 * 8 4 3 39 39 H 0.97003 * 124.94561 * 180.17023 * 9 8 4 40 40 H 1.07995 * 119.31381 * 179.97438 * 12 11 10 41 41 H 0.97002 * 119.99694 * 0.02562 * 16 14 13 42 42 H 1.08995 * 113.61425 * 203.66439 * 19 17 16 43 43 H 1.08999 * 113.61823 * 334.56812 * 19 17 16 44 44 H 1.07996 * 120.07543 * 0.02562 * 23 22 20 45 45 H 1.08003 * 120.07563 * 179.72910 * 27 24 23 46 46 H 1.08010 * 119.92237 * 180.02562 * 28 27 24 47 47 H 1.08000 * 119.84116 * 180.02562 * 29 28 27 48 48 H 1.09002 * 113.62156 * 25.43669 * 30 17 16 49 49 H 1.09003 * 113.61327 * 156.33902 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1934 0.0000 4 6 1.8518 2.6100 -0.0010 5 6 0.4529 3.1705 -0.0018 6 8 -0.1184 3.0234 -1.3034 7 14 0.5073 4.9767 0.4518 8 6 2.9950 3.3125 -0.0064 9 7 4.0671 2.4603 -0.0001 10 6 3.6349 1.1586 0.0005 11 7 4.2721 -0.0068 0.0009 12 6 3.6267 -1.1503 0.0009 13 6 2.2274 -1.1976 0.0005 14 6 1.5224 -2.4950 0.0017 15 8 0.3121 -2.5293 -0.1078 16 7 2.2207 -3.6413 0.1241 17 6 1.5212 -4.9286 0.1247 18 1 0.5653 -4.8911 -0.3976 19 6 2.4081 -6.1117 -0.2980 20 6 2.7866 -6.2562 1.1855 21 1 3.6528 -5.6614 1.4751 22 6 2.8781 -7.6873 1.6485 23 6 4.0687 -8.1747 2.1460 24 6 4.1504 -9.4999 2.5790 25 6 5.3817 -10.0111 3.1018 26 7 6.3583 -10.4161 3.5179 27 6 3.0277 -10.3255 2.4951 28 6 1.8446 -9.8264 1.9905 29 6 1.7694 -8.5113 1.5677 30 6 1.4394 -5.5845 1.5131 31 1 -0.3633 -0.1125 -1.0215 32 1 -0.3633 -0.8283 0.6081 33 1 -0.3632 0.9410 0.4132 34 1 -0.1550 2.6316 0.7249 35 1 0.3718 3.4784 -2.0018 36 1 -0.8661 5.5414 0.4539 37 1 1.1286 5.1457 1.7900 38 1 3.0602 4.3905 -0.0121 39 1 4.9968 2.7370 0.0000 40 1 4.1869 -2.0736 0.0008 41 1 3.1863 -3.6139 0.2118 42 1 1.8470 -6.9598 -0.6901 43 1 3.2441 -5.8247 -0.9359 44 1 4.9345 -7.5319 2.2044 45 1 3.0853 -11.3526 2.8242 46 1 0.9751 -10.4639 1.9255 47 1 0.8406 -8.1257 1.1739 48 1 1.4938 -4.8723 2.3365 49 1 0.6139 -6.2888 1.6153 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_12890568.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:07 Heat of formation + Delta-G solvation = 96.238318 kcal Electronic energy + Delta-G solvation = -34022.336179 eV Core-core repulsion = 29496.692479 eV Total energy + Delta-G solvation = -4525.643700 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.84213 -41.58660 -40.59864 -39.27765 -38.54617 -37.68000 -37.44303 -35.20244 -34.58534 -32.22774 -32.21207 -31.83606 -30.74505 -28.94081 -26.65057 -26.61155 -26.08924 -24.99522 -24.53950 -23.91722 -22.75853 -22.02406 -20.70069 -20.64124 -19.38689 -18.88736 -18.73175 -17.62908 -17.47035 -17.26632 -17.03613 -16.71837 -16.58443 -16.38383 -16.07199 -15.74623 -15.55301 -15.48408 -15.25534 -15.15424 -14.84418 -14.61661 -14.45437 -14.22695 -14.14728 -14.05348 -13.90353 -13.76354 -13.74985 -13.65819 -13.36629 -13.29686 -13.11688 -12.89548 -12.73524 -12.46737 -12.29755 -12.01028 -11.71969 -11.63640 -11.21589 -11.16717 -11.12286 -10.50958 -10.18268 -10.09619 -9.89640 -9.65363 -9.59603 -9.09708 -4.98017 -0.34012 -0.17931 -0.06723 0.39153 1.35997 1.44536 1.56459 1.67209 1.75999 1.80867 1.91518 2.05796 2.07062 2.76152 2.83364 2.87137 3.32130 3.48030 3.54087 3.63153 3.63554 3.71612 3.75095 3.77875 3.82171 3.95833 4.04259 4.15540 4.20905 4.22753 4.28376 4.32606 4.34645 4.36391 4.53718 4.60619 4.70575 4.74456 4.79364 4.80455 4.87670 4.94126 4.99483 5.04291 5.08943 5.12718 5.18035 5.24907 5.25283 5.36453 5.39841 5.44501 5.56377 5.72225 5.74853 5.91373 6.24520 6.40033 6.49592 6.83940 6.89603 7.19254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.059 3.941 3 C -0.167 4.167 4 C -0.207 4.207 5 C -0.049 4.049 6 O -0.557 6.557 7 Si 0.802 3.198 8 C 0.095 3.905 9 N -0.560 5.560 10 C 0.287 3.713 11 N -0.516 5.516 12 C 0.180 3.820 13 C -0.241 4.241 14 C 0.573 3.427 15 O -0.564 6.564 16 N -0.696 5.696 17 C 0.114 3.886 18 H 0.089 0.911 19 C -0.124 4.124 20 C -0.068 4.068 21 H 0.111 0.889 22 C -0.073 4.073 23 C -0.068 4.068 24 C -0.046 4.046 25 C 0.276 3.724 26 N -0.474 5.474 27 C -0.077 4.077 28 C -0.117 4.117 29 C -0.083 4.083 30 C -0.142 4.142 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.394 0.606 36 H -0.305 1.305 37 H -0.281 1.281 38 H 0.231 0.769 39 H 0.439 0.561 40 H 0.195 0.805 41 H 0.413 0.587 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.155 0.845 47 H 0.150 0.850 48 H 0.064 0.936 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.465 5.333 -3.553 6.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.051 3.949 3 C -0.174 4.174 4 C -0.214 4.214 5 C -0.158 4.158 6 O -0.365 6.365 7 Si 0.706 3.294 8 C -0.031 4.031 9 N -0.167 5.167 10 C 0.053 3.947 11 N -0.229 5.229 12 C 0.011 3.989 13 C -0.249 4.249 14 C 0.362 3.638 15 O -0.444 6.444 16 N -0.348 5.348 17 C 0.008 3.992 18 H 0.107 0.893 19 C -0.161 4.161 20 C -0.086 4.086 21 H 0.129 0.871 22 C -0.074 4.074 23 C -0.088 4.088 24 C -0.050 4.050 25 C -0.038 4.038 26 N -0.150 5.150 27 C -0.097 4.097 28 C -0.135 4.135 29 C -0.101 4.101 30 C -0.181 4.181 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.244 0.756 36 H -0.233 1.233 37 H -0.208 1.208 38 H 0.247 0.753 39 H 0.280 0.720 40 H 0.211 0.789 41 H 0.251 0.749 42 H 0.127 0.873 43 H 0.106 0.894 44 H 0.158 0.842 45 H 0.157 0.843 46 H 0.172 0.828 47 H 0.167 0.833 48 H 0.083 0.917 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.508 5.090 -2.101 5.709 hybrid contribution -0.379 -0.715 0.340 0.878 sum 1.130 4.374 -1.761 4.849 Atomic orbital electron populations 1.20980 0.89488 1.02938 1.03217 1.20074 0.96969 0.90333 0.87553 1.19772 0.93337 0.94493 1.09792 1.20809 0.96340 0.90357 1.13916 1.24770 0.89920 1.12301 0.88767 1.86496 1.54439 1.78664 1.16893 0.94078 0.80649 0.72674 0.81986 1.22396 0.83666 0.97362 0.99712 1.41633 1.10703 1.01700 1.62673 1.18788 0.89476 0.86931 0.99484 1.66511 1.40880 0.96510 1.19048 1.22965 0.89654 0.95320 0.90962 1.20515 0.95459 0.93388 1.15488 1.17950 0.86430 0.83944 0.75520 1.90746 1.15087 1.87437 1.51178 1.45452 1.11083 1.04505 1.73791 1.21908 0.97125 0.82077 0.98041 0.89255 1.23405 0.99997 0.97213 0.95530 1.21671 0.99039 0.91424 0.96468 0.87076 1.19687 0.92788 0.96069 0.98808 1.21214 0.98848 0.92924 0.95856 1.16103 0.87419 0.95510 1.05962 1.26185 0.92879 0.92402 0.92308 1.81327 1.12694 1.09704 1.11317 1.21405 0.91480 0.99888 0.96933 1.21383 0.97881 0.96167 0.98047 1.21599 0.98977 0.93274 0.96287 1.23633 0.97803 0.99641 0.96973 0.90761 0.89950 0.91268 0.88664 0.75632 1.23329 1.20784 0.75287 0.71977 0.78884 0.74932 0.87306 0.89362 0.84222 0.84284 0.82754 0.83253 0.91694 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 8.69 71.24 0.62 -0.31 16 2 C 0.06 0.44 5.98 -19.25 -0.12 0.33 16 3 C -0.17 -0.87 6.16 -20.19 -0.12 -1.00 16 4 C -0.21 0.12 5.57 -18.64 -0.10 0.02 16 5 C -0.05 0.05 2.06 71.24 0.15 0.20 16 6 O -0.56 -0.06 12.88 -148.98 -1.92 -1.98 16 7 Si 0.80 -4.48 30.77 68.60 2.11 -2.36 16 8 C 0.10 -0.67 10.44 82.97 0.87 0.20 16 9 N -0.56 2.34 6.04 -192.24 -1.16 1.18 16 10 C 0.29 1.01 8.42 134.02 1.13 2.14 16 11 N -0.52 -2.09 10.37 -191.75 -1.99 -4.08 16 12 C 0.18 0.15 10.67 85.20 0.91 1.06 16 13 C -0.24 -1.11 5.89 -19.99 -0.12 -1.23 16 14 C 0.57 2.63 7.72 86.73 0.67 3.30 16 15 O -0.56 -6.57 13.11 -3.96 -0.05 -6.63 16 16 N -0.70 2.28 5.22 -443.08 -2.31 -0.03 16 17 C 0.11 -0.50 4.30 45.52 0.20 -0.31 16 18 H 0.09 -0.02 7.50 -2.39 -0.02 -0.03 16 19 C -0.12 1.13 7.29 31.12 0.23 1.35 16 20 C -0.07 0.59 3.86 -10.92 -0.04 0.55 16 21 H 0.11 -1.18 8.09 -2.39 -0.02 -1.19 16 22 C -0.07 0.49 5.29 -19.90 -0.11 0.39 16 23 C -0.07 0.29 9.41 22.54 0.21 0.50 16 24 C -0.05 0.06 5.73 -21.36 -0.12 -0.07 16 25 C 0.28 1.42 15.33 88.33 1.35 2.77 16 26 N -0.47 -5.49 18.54 19.01 0.35 -5.14 16 27 C -0.08 0.32 9.76 22.54 0.22 0.54 16 28 C -0.12 0.84 10.03 22.23 0.22 1.07 16 29 C -0.08 0.65 8.61 22.33 0.19 0.84 16 30 C -0.14 0.87 7.27 31.21 0.23 1.09 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 0.90 5.95 -2.39 -0.01 0.88 16 33 H 0.07 0.49 5.05 -2.39 -0.01 0.48 16 34 H 0.10 0.23 6.05 -2.39 -0.01 0.21 16 35 H 0.39 -3.40 8.70 -74.05 -0.64 -4.04 16 36 H -0.31 -1.00 7.11 99.48 0.71 -0.29 16 37 H -0.28 0.33 7.11 99.48 0.71 1.04 16 38 H 0.23 -3.90 6.36 -2.91 -0.02 -3.92 16 39 H 0.44 -4.28 8.96 -92.71 -0.83 -5.11 16 40 H 0.19 -1.48 6.43 -2.91 -0.02 -1.49 16 41 H 0.41 -3.76 6.78 -92.71 -0.63 -4.39 16 42 H 0.11 -1.11 7.72 -2.39 -0.02 -1.13 16 43 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 44 H 0.14 -0.90 8.05 -2.91 -0.02 -0.92 16 45 H 0.14 -0.84 8.06 -2.91 -0.02 -0.86 16 46 H 0.15 -1.74 8.06 -2.91 -0.02 -1.76 16 47 H 0.15 -1.70 6.65 -2.91 -0.02 -1.72 16 48 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 49 H 0.10 -0.81 6.32 -2.39 -0.02 -0.82 16 Total: 0.00 -31.57 408.76 0.51 -31.06 By element: Atomic # 1 Polarization: -24.47 SS G_CDS: -0.99 Total: -25.46 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 6.46 Total: 13.43 kcal Atomic # 7 Polarization: -2.96 SS G_CDS: -5.11 Total: -8.07 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -1.97 Total: -8.61 kcal Atomic # 14 Polarization: -4.48 SS G_CDS: 2.11 Total: -2.36 kcal Total: -31.57 0.51 -31.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_12890568.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.302 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds