Wall clock time and date at job start Tue Mar 9 2021 12:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39610 * 120.15170 * 210.04244 * 3 2 1 5 5 C 1.37960 * 119.85069 * 179.97438 * 4 3 2 6 6 C 1.38345 * 120.15139 * 359.74240 * 5 4 3 7 7 C 1.38384 * 120.30333 * 0.51628 * 6 5 4 8 8 C 1.50695 * 119.92540 * 179.76005 * 7 6 5 9 9 H 1.09003 * 112.84954 * 190.91753 * 8 7 6 10 10 C 1.53777 * 113.61350 * 322.22563 * 8 7 6 11 11 C 1.53781 * 87.07847 * 139.98143 * 10 8 7 12 12 H 1.09005 * 113.69469 * 220.00410 * 11 10 8 13 13 N 1.46502 * 113.61754 * 89.11821 * 11 10 8 14 14 C 1.34773 * 120.00657 * 107.49992 * 13 11 10 15 15 O 1.21571 * 119.99524 * 0.02562 * 14 13 11 16 16 C 1.47712 * 120.00636 * 180.02562 * 14 13 11 17 17 C 1.39708 * 120.02970 * 179.97438 * 16 14 13 18 18 C 1.37665 * 119.97779 * 180.02562 * 17 16 14 19 19 C 1.39502 * 120.02466 * 0.02780 * 18 17 16 20 20 C 1.48278 * 119.97448 * 179.97438 * 19 18 17 21 21 C 1.39406 * 120.12564 * 180.02562 * 20 19 18 22 22 C 1.38000 * 119.86824 * 179.97438 * 21 20 19 23 23 C 1.38328 * 120.13052 * 359.97320 * 22 21 20 24 24 C 1.50696 * 119.87273 * 180.02562 * 23 22 21 25 25 O 1.42903 * 109.47278 * 300.00146 * 24 23 22 26 26 Si 1.86300 * 109.47355 * 180.02562 * 24 23 22 27 27 C 1.38343 * 120.25628 * 0.27823 * 23 22 21 28 28 C 1.38001 * 120.12276 * 359.49058 * 27 23 22 29 29 C 1.39506 * 120.04940 * 0.22995 * 19 18 17 30 30 C 1.37663 * 120.02299 * 359.48370 * 29 19 18 31 31 C 1.53775 * 87.08326 * 334.56810 * 11 10 8 32 32 C 1.37930 * 120.15040 * 359.48495 * 7 6 5 33 33 H 1.08004 * 120.07690 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.93197 * 180.02562 * 5 4 3 35 35 H 1.08002 * 119.85145 * 180.27571 * 6 5 4 36 36 H 1.08996 * 113.61976 * 25.43372 * 10 8 7 37 37 H 1.09006 * 113.61459 * 254.52235 * 10 8 7 38 38 H 0.97010 * 119.99948 * 287.50229 * 13 11 10 39 39 H 1.08004 * 120.00772 * 0.02562 * 17 16 14 40 40 H 1.08005 * 119.98385 * 180.02562 * 18 17 16 41 41 H 1.07995 * 120.05998 * 359.97438 * 21 20 19 42 42 H 1.08002 * 119.93075 * 179.97438 * 22 21 20 43 43 H 1.08997 * 109.47214 * 60.00121 * 24 23 22 44 44 H 0.96700 * 114.00022 * 180.02562 * 25 24 23 45 45 H 1.48506 * 110.00048 * 298.68478 * 26 24 23 46 46 H 1.48502 * 109.99996 * 59.99803 * 26 24 23 47 47 H 1.07998 * 119.93545 * 179.72265 * 27 23 22 48 48 H 1.08004 * 120.06198 * 180.25657 * 28 27 23 49 49 H 1.08000 * 119.98862 * 179.75006 * 29 19 18 50 50 H 1.08000 * 120.01322 * 180.23439 * 30 29 19 51 51 H 1.09001 * 113.61504 * 139.98044 * 31 11 10 52 52 H 1.09001 * 113.61653 * 270.88630 * 31 11 10 53 53 H 1.07998 * 120.07738 * 180.23105 * 32 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 1.0460 0.6044 5 6 4.6483 1.0400 0.6012 6 6 5.3374 -0.0013 0.0056 7 6 4.6492 -1.0380 -0.5999 8 6 5.4084 -2.1653 -1.2509 9 1 4.7705 -2.8142 -1.8510 10 6 6.6845 -1.7095 -1.9779 11 6 7.3587 -2.9750 -1.4222 12 1 8.3843 -2.8149 -1.0895 13 7 7.2194 -4.1448 -2.2931 14 6 8.2827 -4.6008 -2.9844 15 8 9.3576 -4.0416 -2.8849 16 6 8.1422 -5.7799 -3.8630 17 6 9.2439 -6.2527 -4.5802 18 6 9.1116 -7.3513 -5.3991 19 6 7.8778 -7.9923 -5.5133 20 6 7.7364 -9.1752 -6.3961 21 6 6.5048 -9.8178 -6.5130 22 6 6.3791 -10.9180 -7.3365 23 6 7.4719 -11.3830 -8.0456 24 6 7.3280 -12.5846 -8.9437 25 8 6.9120 -13.7111 -8.1691 26 14 8.9655 -12.9569 -9.7503 27 6 8.6979 -10.7526 -7.9295 28 6 8.8344 -9.6486 -7.1127 29 6 6.7756 -7.5178 -4.8017 30 6 6.9071 -6.4229 -3.9777 31 6 6.3271 -2.9291 -0.2827 32 6 3.2699 -1.0447 -0.6041 33 1 2.7321 1.8571 1.0741 34 1 5.1918 1.8478 1.0687 35 1 6.4174 -0.0033 0.0099 36 1 7.1037 -0.7832 -1.5851 37 1 6.5907 -1.7058 -3.0639 38 1 6.3618 -4.5912 -2.3723 39 1 10.1991 -5.7563 -4.4922 40 1 9.9634 -7.7172 -5.9533 41 1 5.6509 -9.4552 -5.9602 42 1 5.4255 -11.4168 -7.4275 43 1 6.5831 -12.3769 -9.7118 44 1 6.7993 -14.5222 -8.6835 45 1 9.3944 -11.8053 -10.5842 46 1 9.9894 -13.2420 -8.7132 47 1 9.5488 -11.1228 -8.4821 48 1 9.7909 -9.1547 -7.0261 49 1 5.8199 -8.0123 -4.8940 50 1 6.0546 -6.0581 -3.4240 51 1 5.9447 -3.9099 -0.0001 52 1 6.6484 -2.3362 0.5736 53 1 2.7340 -1.8562 -1.0738 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_13158362.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:10 Heat of formation + Delta-G solvation = 78.831635 kcal Electronic energy + Delta-G solvation = -35065.165619 eV Core-core repulsion = 30413.166650 eV Total energy + Delta-G solvation = -4651.998969 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.162 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.79282 -41.15047 -40.56378 -39.52338 -38.79031 -37.52333 -37.44675 -34.89128 -34.04101 -32.70353 -32.23587 -32.03476 -31.64015 -30.77753 -27.24137 -26.65259 -26.14146 -24.96950 -24.75873 -24.30515 -22.89135 -22.62932 -22.41008 -21.39462 -20.74364 -19.23686 -18.98708 -18.38021 -18.15375 -17.33775 -17.27396 -16.95899 -16.78430 -16.53075 -16.19740 -16.02263 -15.85696 -15.67085 -15.45061 -15.20164 -15.13902 -15.04794 -14.92902 -14.72645 -14.47501 -14.40419 -14.26676 -14.16705 -13.99917 -13.88322 -13.77077 -13.68598 -13.43923 -13.32482 -12.96372 -12.89233 -12.78910 -12.56286 -12.48437 -12.33656 -11.90480 -11.78366 -11.75893 -11.67614 -11.20855 -11.12861 -10.86309 -10.29104 -10.13668 -10.11108 -10.09356 -9.90728 -9.65925 -9.14934 -4.96911 -0.76613 -0.18956 0.23256 0.30454 0.37684 0.41311 1.28446 1.56259 1.60773 1.74279 1.90861 1.94828 2.02332 2.50405 2.82729 2.85822 2.92449 3.31090 3.40080 3.49582 3.54104 3.67410 3.71301 3.74027 3.77962 3.82862 3.89573 3.94036 3.97629 4.01855 4.17313 4.19398 4.20619 4.21097 4.25252 4.32879 4.42538 4.51743 4.54368 4.61446 4.68924 4.76929 4.79130 4.83342 4.84138 4.89742 4.97668 5.01198 5.04148 5.06267 5.08771 5.11472 5.18906 5.20932 5.31951 5.35208 5.37040 5.42636 5.51861 5.55124 5.68025 5.73718 5.80491 5.89965 6.39691 6.44481 6.89013 7.12047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.276 3.724 3 C -0.046 4.046 4 C -0.076 4.076 5 C -0.117 4.117 6 C -0.084 4.084 7 C -0.074 4.074 8 C -0.066 4.066 9 H 0.113 0.887 10 C -0.142 4.142 11 C 0.109 3.891 12 H 0.087 0.913 13 N -0.694 5.694 14 C 0.560 3.440 15 O -0.579 6.579 16 C -0.150 4.150 17 C -0.070 4.070 18 C -0.126 4.126 19 C -0.025 4.025 20 C -0.060 4.060 21 C -0.102 4.102 22 C -0.096 4.096 23 C -0.088 4.088 24 C -0.077 4.077 25 O -0.563 6.563 26 Si 0.768 3.232 27 C -0.143 4.143 28 C -0.110 4.110 29 C -0.117 4.117 30 C -0.071 4.071 31 C -0.124 4.124 32 C -0.067 4.067 33 H 0.139 0.861 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.415 0.585 39 H 0.128 0.872 40 H 0.140 0.860 41 H 0.157 0.843 42 H 0.145 0.855 43 H 0.098 0.902 44 H 0.404 0.596 45 H -0.290 1.290 46 H -0.300 1.300 47 H 0.116 0.884 48 H 0.141 0.859 49 H 0.159 0.841 50 H 0.163 0.837 51 H 0.087 0.913 52 H 0.108 0.892 53 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.270 -3.611 -1.949 4.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.038 4.038 3 C -0.050 4.050 4 C -0.097 4.097 5 C -0.135 4.135 6 C -0.102 4.102 7 C -0.074 4.074 8 C -0.084 4.084 9 H 0.131 0.869 10 C -0.180 4.180 11 C 0.004 3.996 12 H 0.105 0.895 13 N -0.346 5.346 14 C 0.349 3.651 15 O -0.460 6.460 16 C -0.153 4.153 17 C -0.089 4.089 18 C -0.144 4.144 19 C -0.025 4.025 20 C -0.060 4.060 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.088 4.088 24 C -0.187 4.187 25 O -0.373 6.373 26 Si 0.675 3.325 27 C -0.161 4.161 28 C -0.127 4.127 29 C -0.135 4.135 30 C -0.090 4.090 31 C -0.162 4.162 32 C -0.087 4.087 33 H 0.157 0.843 34 H 0.172 0.828 35 H 0.167 0.833 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.254 0.746 39 H 0.146 0.854 40 H 0.158 0.842 41 H 0.174 0.826 42 H 0.163 0.837 43 H 0.116 0.884 44 H 0.255 0.745 45 H -0.217 1.217 46 H -0.228 1.228 47 H 0.133 0.867 48 H 0.158 0.842 49 H 0.176 0.824 50 H 0.180 0.820 51 H 0.106 0.894 52 H 0.127 0.873 53 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.454 -2.549 -1.477 2.981 hybrid contribution 0.036 0.336 0.097 0.352 sum -0.419 -2.213 -1.380 2.641 Atomic orbital electron populations 1.81322 1.13788 1.09404 1.10454 1.26162 0.93088 0.92300 0.92230 1.16100 0.82874 0.99570 1.06414 1.21408 0.95173 0.96591 0.96511 1.21376 0.93125 0.99568 0.99418 1.21598 1.01642 0.92511 0.94450 1.19674 0.92370 0.96626 0.98734 1.21613 0.94687 0.94950 0.97173 0.86889 1.23587 0.95422 0.98195 1.00814 1.21955 1.00457 0.85540 0.91689 0.89492 1.45476 1.12710 1.31103 1.45269 1.18467 0.83759 0.83365 0.79548 1.90777 1.28599 1.60360 1.66223 1.20014 0.96038 0.97791 1.01413 1.21241 0.98650 0.95060 0.93900 1.21343 0.97814 0.95765 0.99475 1.19108 0.94254 0.93654 0.95492 1.18943 0.94277 0.95402 0.97335 1.21636 0.97295 0.94959 0.98107 1.21192 0.99134 0.95720 0.95374 1.19852 0.93819 0.96383 0.98745 1.24775 1.11442 0.86216 0.96292 1.86434 1.91089 1.20805 1.38953 0.94467 0.73657 0.85048 0.79292 1.20951 0.96607 0.97885 1.00620 1.21381 0.99430 0.96029 0.95899 1.21480 0.99160 0.96739 0.96112 1.21502 0.96200 0.94286 0.96967 1.23414 0.94298 1.02015 0.96461 1.21213 0.94081 0.96684 0.96765 0.84272 0.82801 0.83337 0.87691 0.91511 0.74643 0.85369 0.84211 0.82560 0.83738 0.88438 0.74462 1.21702 1.22800 0.86670 0.84179 0.82353 0.81980 0.89409 0.87349 0.84098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -5.18 18.54 19.00 0.35 -4.83 16 2 C 0.28 1.24 15.33 88.33 1.35 2.59 16 3 C -0.05 0.08 5.73 -21.36 -0.12 -0.04 16 4 C -0.08 0.35 9.76 22.54 0.22 0.57 16 5 C -0.12 0.88 10.03 22.23 0.22 1.11 16 6 C -0.08 0.68 8.59 22.33 0.19 0.87 16 7 C -0.07 0.54 5.28 -19.90 -0.11 0.43 16 8 C -0.07 0.62 3.85 -11.02 -0.04 0.58 16 9 H 0.11 -1.32 8.09 -2.39 -0.02 -1.34 16 10 C -0.14 0.91 7.25 31.12 0.23 1.14 16 11 C 0.11 -0.47 4.32 45.52 0.20 -0.28 16 12 H 0.09 0.04 7.46 -2.38 -0.02 0.02 16 13 N -0.69 2.54 5.21 -443.03 -2.31 0.23 16 14 C 0.56 2.35 7.77 86.75 0.67 3.02 16 15 O -0.58 -7.53 15.93 -3.94 -0.06 -7.59 16 16 C -0.15 -0.28 5.88 -20.06 -0.12 -0.40 16 17 C -0.07 -0.28 9.58 22.49 0.22 -0.07 16 18 C -0.13 -0.27 9.41 22.44 0.21 -0.06 16 19 C -0.02 -0.03 5.88 -20.00 -0.12 -0.14 16 20 C -0.06 -0.14 5.88 -20.05 -0.12 -0.26 16 21 C -0.10 -0.01 9.43 22.49 0.21 0.20 16 22 C -0.10 -0.16 9.59 22.23 0.21 0.06 16 23 C -0.09 -0.33 5.43 -19.82 -0.11 -0.44 16 24 C -0.08 0.10 2.81 71.23 0.20 0.30 16 25 O -0.56 0.75 12.74 -148.98 -1.90 -1.15 16 26 Si 0.77 -1.48 29.77 68.60 2.04 0.57 16 27 C -0.14 -0.75 8.65 22.24 0.19 -0.55 16 28 C -0.11 -0.41 9.43 22.49 0.21 -0.20 16 29 C -0.12 0.37 9.41 22.44 0.21 0.58 16 30 C -0.07 0.29 9.52 22.49 0.21 0.51 16 31 C -0.12 1.15 7.29 31.12 0.23 1.38 16 32 C -0.07 0.33 9.41 22.54 0.21 0.55 16 33 H 0.14 -0.90 8.06 -2.91 -0.02 -0.92 16 34 H 0.15 -1.77 8.06 -2.91 -0.02 -1.79 16 35 H 0.15 -1.72 6.66 -2.91 -0.02 -1.74 16 36 H 0.10 -0.83 6.31 -2.39 -0.02 -0.85 16 37 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 38 H 0.41 -4.16 6.72 -92.70 -0.62 -4.78 16 39 H 0.13 0.71 7.64 -2.91 -0.02 0.69 16 40 H 0.14 -0.07 6.19 -2.91 -0.02 -0.09 16 41 H 0.16 -0.93 6.19 -2.91 -0.02 -0.95 16 42 H 0.14 -0.23 8.06 -2.91 -0.02 -0.25 16 43 H 0.10 -0.55 7.96 -2.39 -0.02 -0.57 16 44 H 0.40 -4.75 8.74 -74.06 -0.65 -5.40 16 45 H -0.29 -1.04 7.11 99.48 0.71 -0.34 16 46 H -0.30 -1.85 7.11 99.48 0.71 -1.14 16 47 H 0.12 0.57 4.86 -2.91 -0.01 0.55 16 48 H 0.14 0.06 6.19 -2.91 -0.02 0.04 16 49 H 0.16 -1.36 6.19 -2.91 -0.02 -1.38 16 50 H 0.16 -1.91 6.39 -2.91 -0.02 -1.93 16 51 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 52 H 0.11 -1.11 7.71 -2.39 -0.02 -1.13 16 53 H 0.14 -1.05 8.05 -2.91 -0.02 -1.07 16 Total: 0.00 -29.44 443.74 2.58 -26.86 By element: Atomic # 1 Polarization: -25.32 SS G_CDS: -0.22 Total: -25.55 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 4.68 Total: 11.46 kcal Atomic # 7 Polarization: -2.64 SS G_CDS: -1.96 Total: -4.60 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -1.96 Total: -8.74 kcal Atomic # 14 Polarization: -1.48 SS G_CDS: 2.04 Total: 0.57 kcal Total: -29.44 2.58 -26.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_13158362.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.693 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds