Wall clock time and date at job start Tue Mar 9 2021 12:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39620 * 120.15000 * 302.31776 * 3 2 1 5 5 C 1.37969 * 119.84316 * 179.97438 * 4 3 2 6 6 C 1.38339 * 120.15112 * 359.74094 * 5 4 3 7 7 C 1.38380 * 120.30819 * 0.51095 * 6 5 4 8 8 C 1.50700 * 119.92824 * 179.76408 * 7 6 5 9 9 H 1.08993 * 112.91004 * 190.97605 * 8 7 6 10 10 C 1.53962 * 113.66521 * 322.28015 * 8 7 6 11 11 C 1.53782 * 87.11063 * 139.88647 * 10 8 7 12 12 H 1.09004 * 113.68975 * 220.07786 * 11 10 8 13 13 N 1.46501 * 113.61142 * 89.18830 * 11 10 8 14 14 C 1.34769 * 120.00014 * 107.50467 * 13 11 10 15 15 O 1.21519 * 120.00223 * 359.97438 * 14 13 11 16 16 C 1.48167 * 120.00110 * 179.97438 * 14 13 11 17 17 N 1.32710 * 119.72343 * 359.71737 * 16 14 13 18 18 C 1.31531 * 121.64905 * 179.75230 * 17 16 14 19 19 C 1.38562 * 120.89466 * 0.53467 * 18 17 16 20 20 C 1.50703 * 120.32230 * 179.71996 * 19 18 17 21 21 O 1.42903 * 109.46894 * 245.02027 * 20 19 18 22 22 Si 1.86302 * 109.46779 * 5.01834 * 20 19 18 23 23 C 1.38625 * 119.35269 * 359.73511 * 19 18 17 24 24 C 1.38580 * 118.49292 * 0.02562 * 23 19 18 25 25 C 1.53781 * 87.08260 * 334.63747 * 11 10 8 26 26 C 1.37929 * 120.15172 * 359.49186 * 7 6 5 27 27 H 1.07995 * 120.07830 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.92109 * 179.97438 * 5 4 3 29 29 H 1.08008 * 119.84687 * 180.27774 * 6 5 4 30 30 H 1.08997 * 113.53543 * 25.33321 * 10 8 7 31 31 H 1.08998 * 113.73879 * 254.46919 * 10 8 7 32 32 H 0.97001 * 119.99973 * 287.49325 * 13 11 10 33 33 H 1.07994 * 119.55419 * 180.27224 * 18 17 16 34 34 H 1.08997 * 109.47110 * 125.01549 * 20 19 18 35 35 H 0.96701 * 114.00067 * 60.00005 * 21 20 19 36 36 H 1.48498 * 109.99830 * 180.02562 * 22 20 19 37 37 H 1.48502 * 109.99894 * 301.31782 * 22 20 19 38 38 H 1.08006 * 120.75334 * 179.97438 * 23 19 18 39 39 H 1.08005 * 120.47286 * 180.02562 * 24 23 19 40 40 H 1.09002 * 113.61445 * 139.98212 * 25 11 10 41 41 H 1.09002 * 113.61408 * 270.79943 * 25 11 10 42 42 H 1.07998 * 120.07696 * 180.27445 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 -0.6445 1.0203 5 6 4.6492 -0.6404 1.0138 6 6 5.3374 -0.0036 -0.0035 7 6 4.6484 0.6422 -1.0150 8 6 5.4068 1.3377 -2.1160 9 1 4.7693 1.9637 -2.7403 10 6 6.6852 2.0469 -1.6334 11 6 7.3587 1.5400 -2.9196 12 1 8.3838 1.1999 -2.7725 13 7 7.2205 2.4560 -4.0545 14 6 8.2847 3.1631 -4.4833 15 8 9.3588 3.0411 -3.9282 16 6 8.1451 4.0891 -5.6314 17 7 6.9709 4.2138 -6.2372 18 6 6.8032 5.0280 -7.2565 19 6 7.8575 5.7826 -7.7453 20 6 7.6524 6.7068 -8.9179 21 8 8.4279 6.2481 -10.0271 22 14 5.8493 6.7251 -9.3860 23 6 9.1029 5.6790 -7.1453 24 6 9.2490 4.8169 -6.0701 25 6 6.3256 0.4008 -2.9180 26 6 3.2692 0.6460 -1.0209 27 1 2.7335 -1.1455 1.8127 28 1 5.1932 -1.1386 1.8026 29 1 6.4175 -0.0073 -0.0061 30 1 7.1038 1.6177 -0.7231 31 1 6.5941 3.1320 -1.5867 32 1 6.3630 2.5535 -4.4975 33 1 5.8316 5.1063 -7.7215 34 1 7.9674 7.7142 -8.6460 35 1 8.2010 5.3561 -10.3237 36 1 5.6338 7.6323 -10.5417 37 1 5.3994 5.3518 -9.7282 38 1 9.9405 6.2563 -7.5081 39 1 10.2049 4.7116 -5.5785 40 1 5.9428 0.1571 -3.9091 41 1 6.6465 -0.4789 -2.3601 42 1 2.7327 1.1466 -1.8134 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_13287726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:29 Heat of formation + Delta-G solvation = 60.688285 kcal Electronic energy + Delta-G solvation = -26489.053129 eV Core-core repulsion = 22594.821294 eV Total energy + Delta-G solvation = -3894.231835 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.98756 -41.28335 -40.23034 -38.98989 -37.98954 -37.44374 -34.81711 -33.66155 -32.97203 -32.21644 -31.83142 -28.00277 -26.63438 -26.13563 -25.05412 -24.86412 -23.85937 -22.76977 -22.05675 -20.70661 -19.30553 -18.97312 -18.64661 -17.73976 -17.28830 -16.93655 -16.65537 -16.52601 -16.40443 -16.20003 -16.07729 -15.70437 -15.33168 -15.15905 -14.88990 -14.58571 -14.49389 -14.37578 -14.19936 -14.14714 -13.95183 -13.76173 -13.47903 -13.38189 -12.95643 -12.77496 -12.62570 -12.47722 -12.13476 -11.76282 -11.66464 -11.41873 -11.19201 -11.06623 -10.68468 -10.65349 -10.37989 -10.05267 -9.88764 -9.63990 -4.91987 -0.59193 -0.17119 0.08936 0.39675 1.24902 1.54187 1.57678 1.59307 1.92382 1.94827 1.97488 2.66452 2.84388 2.87663 2.94991 3.34562 3.50937 3.51372 3.66488 3.72927 3.76966 3.80788 3.93892 3.95859 4.02784 4.14268 4.21109 4.22170 4.34810 4.48504 4.54002 4.61058 4.68107 4.80007 4.85121 4.86523 4.94669 5.00424 5.03343 5.07863 5.10621 5.20901 5.37163 5.38973 5.44480 5.52587 5.69280 5.92035 6.28961 6.41078 6.42795 6.62583 7.06327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.276 3.724 3 C -0.046 4.046 4 C -0.076 4.076 5 C -0.116 4.116 6 C -0.082 4.082 7 C -0.073 4.073 8 C -0.067 4.067 9 H 0.108 0.892 10 C -0.139 4.139 11 C 0.107 3.893 12 H 0.093 0.907 13 N -0.683 5.683 14 C 0.572 3.428 15 O -0.565 6.565 16 C 0.064 3.936 17 N -0.459 5.459 18 C 0.099 3.901 19 C -0.140 4.140 20 C -0.078 4.078 21 O -0.544 6.544 22 Si 0.765 3.235 23 C -0.053 4.053 24 C -0.116 4.116 25 C -0.125 4.125 26 C -0.068 4.068 27 H 0.140 0.860 28 H 0.156 0.844 29 H 0.151 0.849 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.419 0.581 33 H 0.185 0.815 34 H 0.137 0.863 35 H 0.388 0.612 36 H -0.301 1.301 37 H -0.273 1.273 38 H 0.161 0.839 39 H 0.149 0.851 40 H 0.082 0.918 41 H 0.112 0.888 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 0.745 -0.212 2.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.038 4.038 3 C -0.050 4.050 4 C -0.096 4.096 5 C -0.134 4.134 6 C -0.101 4.101 7 C -0.074 4.074 8 C -0.086 4.086 9 H 0.126 0.874 10 C -0.177 4.177 11 C 0.002 3.998 12 H 0.112 0.888 13 N -0.333 5.333 14 C 0.357 3.643 15 O -0.443 6.443 16 C -0.073 4.073 17 N -0.170 5.170 18 C -0.060 4.060 19 C -0.142 4.142 20 C -0.187 4.187 21 O -0.352 6.352 22 Si 0.670 3.330 23 C -0.078 4.078 24 C -0.137 4.137 25 C -0.162 4.162 26 C -0.089 4.089 27 H 0.158 0.842 28 H 0.173 0.827 29 H 0.169 0.831 30 H 0.127 0.873 31 H 0.085 0.915 32 H 0.257 0.743 33 H 0.201 0.799 34 H 0.154 0.846 35 H 0.238 0.762 36 H -0.229 1.229 37 H -0.200 1.200 38 H 0.178 0.822 39 H 0.167 0.833 40 H 0.101 0.899 41 H 0.130 0.870 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.468 0.529 -0.011 0.706 hybrid contribution 1.218 -0.192 -1.131 1.673 sum 1.685 0.337 -1.141 2.063 Atomic orbital electron populations 1.81315 1.13787 1.10391 1.09491 1.26170 0.93101 0.92229 0.92286 1.16101 0.82865 1.05942 1.00050 1.21415 0.95205 0.96484 0.96542 1.21386 0.93092 0.99386 0.99546 1.21599 1.01709 0.94224 0.92545 1.19659 0.92341 0.98599 0.96763 1.21622 0.94812 0.97141 0.94998 0.87418 1.23607 0.95171 1.01056 0.97882 1.22031 1.00707 0.90917 0.86165 0.88846 1.45481 1.12936 1.41900 1.32992 1.18050 0.84005 0.79917 0.82303 1.90793 1.28210 1.66903 1.58423 1.21105 0.90978 0.98400 0.96846 1.67513 1.23342 1.17786 1.08358 1.23038 0.99559 0.91150 0.92288 1.21663 0.94887 0.98872 0.98781 1.25200 1.09501 0.99691 0.84338 1.86620 1.61756 1.38028 1.48808 0.94084 0.74243 0.79193 0.85503 1.21745 0.98045 0.95512 0.92528 1.22292 1.00071 0.94816 0.96519 1.23413 0.94388 0.96756 1.01673 1.21205 0.94164 0.96823 0.96679 0.84226 0.82652 0.83128 0.87277 0.91489 0.74259 0.79892 0.84582 0.76231 1.22911 1.19964 0.82158 0.83306 0.89911 0.86998 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -5.39 18.54 19.00 0.35 -5.03 16 2 C 0.28 1.37 15.33 88.33 1.35 2.73 16 3 C -0.05 0.06 5.73 -21.36 -0.12 -0.06 16 4 C -0.08 0.34 9.76 22.54 0.22 0.56 16 5 C -0.12 0.89 10.03 22.23 0.22 1.11 16 6 C -0.08 0.67 8.59 22.33 0.19 0.86 16 7 C -0.07 0.48 5.29 -19.90 -0.11 0.38 16 8 C -0.07 0.54 3.87 -10.95 -0.04 0.50 16 9 H 0.11 -0.95 8.09 -2.39 -0.02 -0.97 16 10 C -0.14 0.85 7.26 31.18 0.23 1.07 16 11 C 0.11 -0.40 4.32 45.52 0.20 -0.20 16 12 H 0.09 -0.03 7.46 -2.38 -0.02 -0.05 16 13 N -0.68 0.87 5.25 -442.60 -2.33 -1.45 16 14 C 0.57 2.63 7.81 86.88 0.68 3.30 16 15 O -0.56 -6.26 15.92 -3.78 -0.06 -6.32 16 16 C 0.06 0.16 6.75 41.91 0.28 0.44 16 17 N -0.46 0.07 9.54 -184.91 -1.76 -1.70 16 18 C 0.10 -0.37 9.84 84.82 0.83 0.46 16 19 C -0.14 0.60 5.37 -19.69 -0.11 0.49 16 20 C -0.08 0.46 2.82 71.24 0.20 0.66 16 21 O -0.54 1.24 12.84 -148.98 -1.91 -0.68 16 22 Si 0.77 -5.09 29.91 68.60 2.05 -3.04 16 23 C -0.05 0.14 9.83 22.44 0.22 0.36 16 24 C -0.12 -0.10 9.63 22.61 0.22 0.12 16 25 C -0.12 1.01 7.28 31.12 0.23 1.23 16 26 C -0.07 0.28 9.41 22.54 0.21 0.49 16 27 H 0.14 -0.90 8.06 -2.91 -0.02 -0.92 16 28 H 0.16 -1.84 8.06 -2.91 -0.02 -1.86 16 29 H 0.15 -1.80 6.66 -2.91 -0.02 -1.82 16 30 H 0.11 -0.92 6.32 -2.39 -0.02 -0.93 16 31 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.42 -1.81 8.03 -92.71 -0.74 -2.55 16 33 H 0.18 -1.57 4.86 -2.91 -0.01 -1.58 16 34 H 0.14 -1.08 7.96 -2.39 -0.02 -1.10 16 35 H 0.39 -2.97 8.70 -74.06 -0.64 -3.61 16 36 H -0.30 -0.58 7.11 99.48 0.71 0.13 16 37 H -0.27 0.96 7.01 99.48 0.70 1.66 16 38 H 0.16 -0.92 8.06 -2.91 -0.02 -0.94 16 39 H 0.15 0.15 7.64 -2.91 -0.02 0.13 16 40 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 41 H 0.11 -1.11 7.71 -2.39 -0.02 -1.13 16 42 H 0.14 -0.82 8.05 -2.91 -0.02 -0.85 16 Total: 0.00 -22.03 366.99 0.99 -21.04 By element: Atomic # 1 Polarization: -17.06 SS G_CDS: -0.26 Total: -17.33 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 4.91 Total: 14.51 kcal Atomic # 7 Polarization: -4.45 SS G_CDS: -3.74 Total: -8.18 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -1.97 Total: -6.99 kcal Atomic # 14 Polarization: -5.09 SS G_CDS: 2.05 Total: -3.04 kcal Total: -22.03 0.99 -21.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_13287726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.726 kcal (2) G-P(sol) polarization free energy of solvation -22.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds