Wall clock time and date at job start Tue Mar 9 2021 12:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43190 * 179.97438 * 2 1 4 4 C 1.39617 * 120.14826 * 346.30140 * 3 2 1 5 5 C 1.37972 * 119.84482 * 179.97438 * 4 3 2 6 6 C 1.38340 * 120.14912 * 359.97438 * 5 4 3 7 7 C 1.38379 * 120.30978 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.92767 * 179.97438 * 7 6 5 9 9 H 1.09002 * 112.90791 * 191.25095 * 8 7 6 10 10 C 1.53779 * 113.61429 * 322.50423 * 8 7 6 11 11 C 1.53779 * 87.08402 * 139.98140 * 10 8 7 12 12 H 1.08997 * 113.61646 * 220.02209 * 11 10 8 13 13 N 1.46497 * 113.69123 * 89.12592 * 11 10 8 14 14 C 1.34780 * 119.99769 * 107.46801 * 13 11 10 15 15 O 1.21614 * 120.00268 * 0.02562 * 14 13 11 16 16 C 1.47380 * 119.99945 * 179.97438 * 14 13 11 17 17 C 1.36420 * 127.19066 * 359.68757 * 16 14 13 18 18 O 1.33647 * 108.39813 * 179.89142 * 17 16 14 19 19 C 1.34215 * 110.90509 * 0.38591 * 18 17 16 20 20 C 1.50707 * 125.43705 * 179.75884 * 19 18 17 21 21 O 1.42902 * 109.46827 * 120.00054 * 20 19 18 22 22 Si 1.86301 * 109.47120 * 0.02562 * 20 19 18 23 23 C 1.34177 * 109.12587 * 359.76224 * 19 18 17 24 24 C 1.53784 * 113.61308 * 59.99997 * 8 7 6 25 25 C 1.37929 * 120.14985 * 0.25757 * 7 6 5 26 26 H 1.07993 * 120.07944 * 0.02562 * 4 3 2 27 27 H 1.07995 * 119.92879 * 180.02562 * 5 4 3 28 28 H 1.08010 * 119.84560 * 180.02562 * 6 5 4 29 29 H 1.09006 * 113.61307 * 25.43343 * 10 8 7 30 30 H 1.08999 * 113.69146 * 254.53828 * 10 8 7 31 31 H 0.96998 * 120.00318 * 287.46338 * 13 11 10 32 32 H 1.08003 * 125.80323 * 0.02562 * 17 16 14 33 33 H 1.08994 * 109.47316 * 240.00129 * 20 19 18 34 34 H 0.96704 * 114.00051 * 180.02562 * 21 20 19 35 35 H 1.48504 * 109.99818 * 298.67533 * 22 20 19 36 36 H 1.48499 * 110.00259 * 59.99628 * 22 20 19 37 37 H 1.08005 * 127.01824 * 180.02562 * 23 19 18 38 38 H 1.09004 * 113.61451 * 105.47354 * 24 8 7 39 39 H 1.08994 * 113.61477 * 334.56656 * 24 8 7 40 40 H 1.08003 * 120.07640 * 179.71712 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -1.1720 0.2859 5 6 4.6494 -1.1644 0.2837 6 6 5.3374 0.0014 -0.0015 7 6 4.6482 1.1672 -0.2858 8 6 5.4063 2.4325 -0.5947 9 1 4.7687 3.3165 -0.6086 10 6 6.6826 2.6066 0.2453 11 6 7.3560 3.1377 -1.0311 12 1 8.3815 2.7918 -1.1601 13 7 7.2167 4.5848 -1.2116 14 6 8.2800 5.3923 -1.0274 15 8 9.3551 4.9196 -0.7118 16 6 8.1400 6.8481 -1.2095 17 6 7.0136 7.5300 -1.5662 18 8 7.3081 8.8325 -1.6193 19 6 8.5986 9.0444 -1.3176 20 6 9.2788 10.3889 -1.2838 21 8 9.7903 10.6311 0.0284 22 14 8.0500 11.7177 -1.7257 23 6 9.1867 7.8682 -1.0509 24 6 6.3247 2.3160 -1.8227 25 6 3.2689 1.1753 -0.2813 26 1 2.7339 -2.0831 0.5075 27 1 5.1936 -2.0708 0.5042 28 1 6.4175 0.0017 -0.0023 29 1 7.1026 1.6658 0.6014 30 1 6.5898 3.3539 1.0333 31 1 6.3593 4.9619 -1.4638 32 1 6.0474 7.0920 -1.7689 33 1 10.0992 10.3992 -2.0012 34 1 10.2418 11.4809 0.1239 35 1 7.5339 11.4954 -3.1004 36 1 6.9266 11.7139 -0.7546 37 1 10.2181 7.7045 -0.7756 38 1 5.9417 2.8293 -2.7047 39 1 6.6469 1.2960 -2.0318 40 1 2.7323 2.0870 -0.4988 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_13456056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:09 Heat of formation + Delta-G solvation = 38.992520 kcal Electronic energy + Delta-G solvation = -25252.059514 eV Core-core repulsion = 21387.394358 eV Total energy + Delta-G solvation = -3864.665156 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.85234 -41.58411 -40.39603 -38.99506 -37.89762 -37.47077 -34.87848 -33.94273 -32.29675 -32.24862 -31.53060 -26.96656 -26.67305 -26.29146 -25.18003 -24.49954 -22.80174 -22.36065 -21.10824 -20.77735 -19.02255 -18.92971 -18.64221 -17.58076 -17.31264 -17.23621 -16.99924 -16.58682 -16.09271 -16.01357 -15.77835 -15.68596 -15.18810 -15.11565 -14.85014 -14.46005 -14.28634 -14.19604 -14.18303 -14.02255 -13.80658 -13.76455 -13.42611 -12.99965 -12.82330 -12.68706 -12.50590 -12.16705 -11.78923 -11.69748 -11.30572 -11.22337 -11.06411 -10.51546 -10.18164 -9.92225 -9.83899 -9.67225 -5.03189 -0.20289 0.13531 0.36492 0.72101 1.19205 1.52091 1.54842 1.69934 1.89424 1.96068 2.01845 2.16344 2.81354 2.84500 3.29626 3.41801 3.47887 3.68904 3.70004 3.73385 3.85331 3.92366 3.99818 4.17031 4.18852 4.23601 4.31475 4.35756 4.44105 4.50496 4.68652 4.75617 4.78680 4.82379 4.88958 4.99327 5.04058 5.06046 5.07299 5.16969 5.33840 5.41088 5.49542 5.66222 5.72561 5.88663 6.38298 6.41008 6.82647 7.08827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.276 3.724 3 C -0.046 4.046 4 C -0.076 4.076 5 C -0.117 4.117 6 C -0.084 4.084 7 C -0.074 4.074 8 C -0.066 4.066 9 H 0.113 0.887 10 C -0.143 4.143 11 C 0.110 3.890 12 H 0.087 0.913 13 N -0.693 5.693 14 C 0.592 3.408 15 O -0.580 6.580 16 C -0.262 4.262 17 C 0.055 3.945 18 O -0.186 6.186 19 C -0.030 4.030 20 C -0.048 4.048 21 O -0.563 6.563 22 Si 0.816 3.184 23 C -0.144 4.144 24 C -0.122 4.122 25 C -0.067 4.067 26 H 0.140 0.860 27 H 0.155 0.845 28 H 0.149 0.851 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.415 0.585 32 H 0.262 0.738 33 H 0.120 0.880 34 H 0.414 0.586 35 H -0.288 1.288 36 H -0.303 1.303 37 H 0.153 0.847 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.391 3.472 -2.775 5.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.038 4.038 3 C -0.050 4.050 4 C -0.096 4.096 5 C -0.135 4.135 6 C -0.102 4.102 7 C -0.075 4.075 8 C -0.084 4.084 9 H 0.131 0.869 10 C -0.181 4.181 11 C 0.005 3.995 12 H 0.105 0.895 13 N -0.344 5.344 14 C 0.380 3.620 15 O -0.460 6.460 16 C -0.267 4.267 17 C -0.015 4.015 18 O -0.082 6.082 19 C -0.077 4.077 20 C -0.156 4.156 21 O -0.375 6.375 22 Si 0.721 3.279 23 C -0.164 4.164 24 C -0.160 4.160 25 C -0.088 4.088 26 H 0.158 0.842 27 H 0.172 0.828 28 H 0.167 0.833 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.253 0.747 32 H 0.278 0.722 33 H 0.137 0.863 34 H 0.267 0.733 35 H -0.215 1.215 36 H -0.231 1.231 37 H 0.171 0.829 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.141 2.973 -2.746 4.205 hybrid contribution 0.124 -0.769 0.186 0.801 sum 1.265 2.204 -2.559 3.607 Atomic orbital electron populations 1.81323 1.13790 1.08994 1.10864 1.26165 0.93093 0.92327 0.92206 1.16101 0.82869 0.96902 1.09096 1.21414 0.95166 0.96623 0.96443 1.21382 0.93129 0.99665 0.99292 1.21599 1.01651 0.91697 0.95249 1.19672 0.92366 0.95760 0.99657 1.21616 0.94658 0.95417 0.96705 0.86850 1.23598 0.95517 1.02432 0.96582 1.21954 1.00551 0.79186 0.97848 0.89502 1.45343 1.12317 1.06719 1.70023 1.17366 0.83832 0.84971 0.75807 1.90789 1.28769 1.77068 1.49412 1.21540 0.95930 0.94097 1.15126 1.25334 1.00363 0.79193 0.96579 1.83729 1.27479 1.28018 1.69014 1.21707 0.81749 0.97263 1.07011 1.24122 1.05320 0.96224 0.89931 1.86413 1.78183 1.45345 1.27596 0.93981 0.75955 0.82179 0.75814 1.22599 1.00721 0.90231 1.02852 1.23410 0.94143 1.01466 0.96980 1.21209 0.94090 0.96702 0.96761 0.84249 0.82752 0.83326 0.87648 0.91631 0.74709 0.72205 0.86284 0.73307 1.21493 1.23096 0.82939 0.89256 0.87287 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -5.29 18.54 19.00 0.35 -4.94 16 2 C 0.28 1.30 15.33 88.33 1.35 2.65 16 3 C -0.05 0.07 5.73 -21.36 -0.12 -0.05 16 4 C -0.08 0.34 9.76 22.54 0.22 0.56 16 5 C -0.12 0.87 10.03 22.23 0.22 1.09 16 6 C -0.08 0.67 8.60 22.33 0.19 0.86 16 7 C -0.07 0.53 5.28 -19.90 -0.11 0.42 16 8 C -0.07 0.61 3.86 -11.01 -0.04 0.57 16 9 H 0.11 -1.32 8.09 -2.39 -0.02 -1.34 16 10 C -0.14 0.86 7.25 31.12 0.23 1.09 16 11 C 0.11 -0.44 4.32 45.52 0.20 -0.25 16 12 H 0.09 0.08 7.46 -2.39 -0.02 0.06 16 13 N -0.69 2.30 5.26 -443.34 -2.33 -0.03 16 14 C 0.59 3.48 7.81 86.65 0.68 4.16 16 15 O -0.58 -8.94 16.58 -4.07 -0.07 -9.01 16 16 C -0.26 -1.15 6.31 -18.99 -0.12 -1.27 16 17 C 0.05 -0.11 11.61 67.40 0.78 0.67 16 18 O -0.19 -0.66 8.89 4.52 0.04 -0.62 16 19 C -0.03 -0.15 6.24 24.76 0.15 0.01 16 20 C -0.05 0.08 2.97 71.24 0.21 0.30 16 21 O -0.56 0.74 12.84 -148.98 -1.91 -1.18 16 22 Si 0.82 -3.02 32.08 68.60 2.20 -0.82 16 23 C -0.14 -1.09 10.88 23.64 0.26 -0.84 16 24 C -0.12 1.14 7.29 31.12 0.23 1.37 16 25 C -0.07 0.32 9.41 22.54 0.21 0.53 16 26 H 0.14 -0.88 8.06 -2.91 -0.02 -0.91 16 27 H 0.15 -1.76 8.06 -2.91 -0.02 -1.78 16 28 H 0.15 -1.70 6.64 -2.91 -0.02 -1.72 16 29 H 0.11 -0.79 6.30 -2.38 -0.02 -0.81 16 30 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.42 -4.45 7.67 -92.71 -0.71 -5.16 16 32 H 0.26 -3.63 7.47 -2.91 -0.02 -3.65 16 33 H 0.12 -0.82 7.96 -2.39 -0.02 -0.84 16 34 H 0.41 -5.37 8.74 -74.05 -0.65 -6.02 16 35 H -0.29 -0.59 7.11 99.48 0.71 0.12 16 36 H -0.30 -1.54 7.11 99.48 0.71 -0.83 16 37 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 38 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H 0.11 -1.12 7.72 -2.39 -0.02 -1.14 16 40 H 0.14 -1.01 8.05 -2.91 -0.02 -1.04 16 Total: 0.00 -32.28 357.66 2.62 -29.66 By element: Atomic # 1 Polarization: -24.74 SS G_CDS: -0.21 Total: -24.95 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 4.54 Total: 11.88 kcal Atomic # 7 Polarization: -2.99 SS G_CDS: -1.98 Total: -4.97 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -1.94 Total: -10.81 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: 2.20 Total: -0.82 kcal Total: -32.28 2.62 -29.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_13456056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.653 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds