Wall clock time and date at job start Tue Mar 9 2021 12:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39614 * 120.14875 * 35.76792 * 3 2 1 5 5 C 1.37974 * 119.84400 * 179.97438 * 4 3 2 6 6 C 1.38346 * 120.14873 * 359.74778 * 5 4 3 7 7 C 1.38379 * 120.30574 * 0.51100 * 6 5 4 8 8 C 1.50701 * 119.92489 * 179.76437 * 7 6 5 9 9 H 1.09002 * 112.84880 * 190.92077 * 8 7 6 10 10 C 1.54053 * 113.61598 * 322.22742 * 8 7 6 11 11 C 1.53782 * 86.98394 * 139.97991 * 10 8 7 12 12 H 1.09003 * 113.61031 * 219.97894 * 11 10 8 13 13 N 1.46502 * 113.61473 * 89.16233 * 11 10 8 14 14 C 1.34771 * 119.99981 * 105.86630 * 13 11 10 15 15 O 1.21282 * 120.00253 * 4.74688 * 14 13 11 16 16 C 1.50705 * 119.99975 * 184.75603 * 14 13 11 17 17 C 1.53040 * 109.32829 * 216.02692 * 16 14 13 18 18 C 1.53534 * 108.56238 * 190.16560 * 17 16 14 19 19 N 1.47029 * 107.65937 * 60.94871 * 18 17 16 20 20 C 1.38931 * 118.88379 * 316.33624 * 19 18 17 21 21 C 1.31111 * 121.84514 * 13.31797 * 20 19 18 22 22 C 1.50704 * 118.54518 * 179.56938 * 21 20 19 23 23 O 1.42901 * 109.47075 * 106.69086 * 22 21 20 24 24 Si 1.86298 * 109.47122 * 346.69084 * 22 21 20 25 25 C 1.53774 * 113.61597 * 59.72107 * 8 7 6 26 26 C 1.37934 * 120.15389 * 359.48794 * 7 6 5 27 27 H 1.07997 * 120.07873 * 359.95424 * 4 3 2 28 28 H 1.07994 * 119.92024 * 179.97438 * 5 4 3 29 29 H 1.07997 * 119.84275 * 180.26594 * 6 5 4 30 30 H 1.08998 * 113.61408 * 25.47181 * 10 8 7 31 31 H 1.09002 * 113.69671 * 254.49228 * 10 8 7 32 32 H 0.97001 * 119.99511 * 285.86055 * 13 11 10 33 33 H 1.09002 * 109.18125 * 335.59262 * 16 14 13 34 34 H 1.09002 * 109.61943 * 70.44563 * 17 16 14 35 35 H 1.08996 * 109.62166 * 309.88656 * 17 16 14 36 36 H 1.09010 * 109.82402 * 301.41451 * 18 17 16 37 37 H 1.08998 * 109.87734 * 180.51735 * 18 17 16 38 38 H 0.96994 * 120.56022 * 136.35790 * 19 18 17 39 39 H 1.08002 * 119.07792 * 193.03143 * 20 19 18 40 40 H 1.09001 * 109.47038 * 226.69142 * 22 21 20 41 41 H 0.96699 * 113.99664 * 299.99915 * 23 22 21 42 42 H 1.48498 * 110.00100 * 180.02562 * 24 22 21 43 43 H 1.48508 * 109.99772 * 301.31843 * 24 22 21 44 44 H 1.09000 * 113.61846 * 105.47071 * 25 8 7 45 45 H 1.09003 * 113.69060 * 334.58140 * 25 8 7 46 46 H 1.07997 * 120.07612 * 180.28109 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -0.9786 -0.7057 5 6 4.6494 -0.9717 -0.7018 6 6 5.3374 0.0056 -0.0051 7 6 4.6483 0.9760 0.7008 8 6 5.4064 2.0335 1.4610 9 1 4.7679 2.6187 2.1228 10 6 6.6853 1.5077 2.1403 11 6 7.3560 2.8238 1.7125 12 1 8.3818 2.6984 1.3656 13 7 7.2157 3.9007 2.6958 14 6 8.2707 4.2654 3.4509 15 8 9.3575 3.7628 3.2577 16 6 8.1001 5.2977 4.5356 17 6 9.3602 6.1626 4.6145 18 6 9.2781 7.0319 5.8774 19 7 9.2141 6.1296 7.0365 20 6 8.3836 5.0174 6.9761 21 6 7.8594 4.6060 5.8469 22 6 6.9767 3.3847 5.8656 23 8 5.6138 3.7794 5.6954 24 14 7.1693 2.5040 7.4959 25 6 6.3245 2.8909 0.5740 26 6 3.2689 0.9811 0.7055 27 1 2.7337 -1.7399 -1.2530 28 1 5.1934 -1.7289 -1.2469 29 1 6.4174 0.0088 -0.0090 30 1 7.1057 0.6260 1.6566 31 1 6.5932 1.3957 3.2206 32 1 6.3634 4.3512 2.8033 33 1 7.2437 5.9287 4.2979 34 1 9.4212 6.8017 3.7336 35 1 10.2408 5.5225 4.6674 36 1 8.3823 7.6519 5.8418 37 1 10.1627 7.6645 5.9500 38 1 9.7424 6.3079 7.8301 39 1 8.1675 4.4738 7.8840 40 1 7.2651 2.7155 5.0549 41 1 5.2888 4.3769 6.3827 42 1 6.3043 1.2974 7.5267 43 1 8.5884 2.1164 7.6993 44 1 5.9413 3.8947 0.3906 45 1 6.6470 2.3879 -0.3376 46 1 2.7324 1.7417 1.2531 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_15608500.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:21 Heat of formation + Delta-G solvation = 37.242097 kcal Electronic energy + Delta-G solvation = -29182.169981 eV Core-core repulsion = 25232.298486 eV Total energy + Delta-G solvation = -3949.871495 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.78615 -40.91644 -39.64965 -38.69908 -37.48094 -37.37566 -34.57444 -33.34752 -32.68447 -32.26218 -31.81243 -27.40170 -26.72717 -26.39202 -25.58527 -24.78646 -23.17485 -22.82461 -21.95656 -20.70144 -19.19818 -18.99427 -18.90070 -18.07936 -17.30616 -17.11642 -16.99203 -16.68625 -16.53102 -15.99315 -15.80347 -15.39788 -15.27414 -15.15765 -14.91146 -14.75174 -14.52365 -14.38738 -14.18833 -14.15902 -13.99214 -13.90418 -13.76598 -13.43357 -13.21910 -12.96592 -12.81707 -12.53794 -12.51495 -12.31562 -11.95678 -11.85289 -11.76914 -11.68083 -11.31636 -11.21970 -10.73385 -10.18964 -10.01692 -9.92908 -9.68127 -8.40752 -5.06612 -0.21536 0.35186 1.28439 1.37528 1.54530 1.60728 1.68323 1.88738 1.99466 2.26106 2.70330 2.80512 2.83587 3.48752 3.58013 3.69450 3.73556 3.81974 3.87397 3.90741 3.96123 4.00125 4.15920 4.17578 4.21674 4.30431 4.37966 4.42471 4.49822 4.57764 4.66754 4.70981 4.76558 4.78155 4.79298 4.86257 4.92300 5.00019 5.04398 5.04881 5.19929 5.24622 5.29410 5.32771 5.40044 5.48257 5.55002 5.69853 5.87145 6.35698 6.37778 6.58386 6.96535 7.00641 7.29110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.276 3.724 3 C -0.045 4.045 4 C -0.075 4.075 5 C -0.116 4.116 6 C -0.085 4.085 7 C -0.074 4.074 8 C -0.063 4.063 9 H 0.107 0.893 10 C -0.144 4.144 11 C 0.110 3.890 12 H 0.083 0.917 13 N -0.698 5.698 14 C 0.525 3.475 15 O -0.589 6.589 16 C -0.031 4.031 17 C -0.128 4.128 18 C 0.124 3.876 19 N -0.746 5.746 20 C 0.165 3.835 21 C -0.296 4.296 22 C -0.040 4.040 23 O -0.551 6.551 24 Si 0.757 3.243 25 C -0.121 4.121 26 C -0.068 4.068 27 H 0.142 0.858 28 H 0.156 0.844 29 H 0.147 0.853 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.414 0.586 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.414 0.586 39 H 0.152 0.848 40 H 0.077 0.923 41 H 0.393 0.607 42 H -0.306 1.306 43 H -0.302 1.302 44 H 0.086 0.914 45 H 0.107 0.893 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.203 5.856 3.033 7.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.038 4.038 3 C -0.048 4.048 4 C -0.096 4.096 5 C -0.134 4.134 6 C -0.103 4.103 7 C -0.074 4.074 8 C -0.081 4.081 9 H 0.125 0.875 10 C -0.183 4.183 11 C 0.004 3.996 12 H 0.101 0.899 13 N -0.349 5.349 14 C 0.313 3.687 15 O -0.469 6.469 16 C -0.052 4.052 17 C -0.167 4.167 18 C 0.000 4.000 19 N -0.376 5.376 20 C 0.042 3.958 21 C -0.307 4.307 22 C -0.152 4.152 23 O -0.359 6.359 24 Si 0.666 3.334 25 C -0.159 4.159 26 C -0.088 4.088 27 H 0.160 0.840 28 H 0.174 0.826 29 H 0.165 0.835 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.252 0.748 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.250 0.750 39 H 0.168 0.832 40 H 0.095 0.905 41 H 0.243 0.757 42 H -0.234 1.234 43 H -0.230 1.230 44 H 0.105 0.895 45 H 0.126 0.874 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.463 4.501 2.669 5.783 hybrid contribution 0.320 -0.255 -0.332 0.527 sum 2.783 4.246 2.336 5.589 Atomic orbital electron populations 1.81311 1.13690 1.09534 1.10200 1.26125 0.93047 0.92332 0.92282 1.16090 0.82957 1.00726 1.05056 1.21419 0.95100 0.96556 0.96481 1.21381 0.93181 0.99430 0.99394 1.21575 1.01551 0.92968 0.94214 1.19681 0.92445 0.97036 0.98277 1.21585 0.94562 0.95078 0.96901 0.87494 1.23626 0.95950 0.97954 1.00727 1.21869 0.99919 0.87614 0.90173 0.89890 1.45696 1.13978 1.37075 1.38158 1.21042 0.83287 0.82652 0.81734 1.90670 1.27757 1.57813 1.70615 1.19638 1.00222 0.94415 0.90905 1.21811 0.96593 0.98497 0.99836 1.21666 1.03378 0.91198 0.83752 1.44687 1.47999 1.25775 1.19158 1.20546 0.90027 0.88721 0.96529 1.20396 1.12910 1.04265 0.93173 1.24612 0.83558 0.97885 1.09171 1.86410 1.24269 1.69905 1.55321 0.94711 0.76746 0.81325 0.80634 1.23360 0.94323 1.01366 0.96846 1.21196 0.94075 0.96763 0.96800 0.84013 0.82635 0.83519 0.87936 0.92463 0.74845 0.87526 0.89873 0.92838 0.90485 0.88454 0.75019 0.83161 0.90513 0.75713 1.23446 1.22998 0.89540 0.87421 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -5.80 18.54 19.00 0.35 -5.45 16 2 C 0.28 1.70 15.33 88.33 1.35 3.06 16 3 C -0.04 -0.01 5.73 -21.36 -0.12 -0.13 16 4 C -0.08 0.22 9.76 22.54 0.22 0.44 16 5 C -0.12 0.66 10.03 22.23 0.22 0.88 16 6 C -0.08 0.47 8.59 22.33 0.19 0.66 16 7 C -0.07 0.29 5.28 -19.90 -0.11 0.19 16 8 C -0.06 0.32 3.87 -10.92 -0.04 0.27 16 9 H 0.11 -0.58 8.09 -2.39 -0.02 -0.60 16 10 C -0.14 0.29 7.27 31.21 0.23 0.51 16 11 C 0.11 -0.09 4.33 45.52 0.20 0.10 16 12 H 0.08 0.31 7.45 -2.39 -0.02 0.29 16 13 N -0.70 0.30 5.12 -440.03 -2.25 -1.95 16 14 C 0.52 2.64 5.27 87.66 0.46 3.10 16 15 O -0.59 -8.46 15.69 -3.04 -0.05 -8.51 16 16 C -0.03 0.01 2.70 -12.43 -0.03 -0.02 16 17 C -0.13 0.10 5.31 30.79 0.16 0.26 16 18 C 0.12 -0.80 7.16 86.46 0.62 -0.19 16 19 N -0.75 4.57 5.83 -345.90 -2.02 2.55 16 20 C 0.16 -0.69 9.61 83.42 0.80 0.11 16 21 C -0.30 0.35 5.00 -16.75 -0.08 0.27 16 22 C -0.04 0.01 2.47 71.24 0.18 0.19 16 23 O -0.55 1.88 12.88 -148.98 -1.92 -0.04 16 24 Si 0.76 -0.53 29.76 68.60 2.04 1.51 16 25 C -0.12 0.71 7.28 31.12 0.23 0.94 16 26 C -0.07 0.13 9.41 22.54 0.21 0.35 16 27 H 0.14 -0.75 8.06 -2.91 -0.02 -0.77 16 28 H 0.16 -1.55 8.06 -2.91 -0.02 -1.58 16 29 H 0.15 -1.29 6.66 -2.91 -0.02 -1.31 16 30 H 0.10 -0.40 6.32 -2.39 -0.02 -0.41 16 31 H 0.06 0.11 7.98 -2.39 -0.02 0.10 16 32 H 0.41 -1.93 8.65 -92.71 -0.80 -2.73 16 33 H 0.11 -0.49 8.07 -2.39 -0.02 -0.51 16 34 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.05 0.32 7.51 -2.39 -0.02 0.30 16 36 H 0.08 -0.65 8.14 -2.38 -0.02 -0.67 16 37 H 0.10 -0.89 8.14 -2.39 -0.02 -0.91 16 38 H 0.41 -4.08 8.96 -92.71 -0.83 -4.91 16 39 H 0.15 -1.29 4.58 -2.91 -0.01 -1.30 16 40 H 0.08 0.40 6.48 -2.39 -0.02 0.39 16 41 H 0.39 -4.46 8.70 -74.06 -0.64 -5.10 16 42 H -0.31 -2.28 7.11 99.48 0.71 -1.57 16 43 H -0.30 -1.93 7.11 99.48 0.71 -1.23 16 44 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 45 H 0.11 -0.79 7.72 -2.39 -0.02 -0.81 16 46 H 0.14 -0.52 8.05 -2.91 -0.02 -0.54 16 Total: 0.00 -25.29 380.35 -0.34 -25.63 By element: Atomic # 1 Polarization: -23.55 SS G_CDS: -1.19 Total: -24.73 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 4.69 Total: 10.99 kcal Atomic # 7 Polarization: -0.93 SS G_CDS: -3.92 Total: -4.85 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -1.97 Total: -8.55 kcal Atomic # 14 Polarization: -0.53 SS G_CDS: 2.04 Total: 1.51 kcal Total: -25.29 -0.34 -25.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_15608500.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.872 kcal (2) G-P(sol) polarization free energy of solvation -25.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds