Wall clock time and date at job start Tue Mar 9 2021 12:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39611 * 120.15292 * 44.08760 * 3 2 1 5 5 C 1.37964 * 119.84989 * 179.97438 * 4 3 2 6 6 C 1.38344 * 120.15037 * 359.73792 * 5 4 3 7 7 C 1.38389 * 120.30257 * 0.51696 * 6 5 4 8 8 C 1.50697 * 119.92263 * 179.76443 * 7 6 5 9 9 H 1.08997 * 112.84658 * 190.92023 * 8 7 6 10 10 C 1.53782 * 113.69082 * 322.18280 * 8 7 6 11 11 C 1.53784 * 87.07675 * 139.99571 * 10 8 7 12 12 H 1.09008 * 113.68801 * 220.01009 * 11 10 8 13 13 N 1.46499 * 113.61716 * 89.12225 * 11 10 8 14 14 C 1.34770 * 120.00260 * 107.49419 * 13 11 10 15 15 O 1.21288 * 120.00211 * 0.02562 * 14 13 11 16 16 C 1.50702 * 120.00127 * 179.97438 * 14 13 11 17 17 O 1.42899 * 109.47299 * 179.97438 * 16 14 13 18 18 C 1.35898 * 116.99859 * 180.02562 * 17 16 14 19 19 C 1.38719 * 120.05287 * 180.23631 * 18 17 16 20 20 C 1.38170 * 119.94142 * 180.31484 * 19 18 17 21 21 C 1.50699 * 119.97246 * 179.70403 * 20 19 18 22 22 O 1.42894 * 109.47188 * 64.72533 * 21 20 19 23 23 Si 1.86298 * 109.46950 * 184.73206 * 21 20 19 24 24 C 1.38250 * 120.05239 * 359.43497 * 20 19 18 25 25 C 1.38281 * 120.11289 * 0.29193 * 24 20 19 26 26 C 1.38123 * 120.05665 * 0.02562 * 25 24 20 27 27 C 1.53778 * 87.08439 * 334.56668 * 11 10 8 28 28 C 1.37923 * 120.14951 * 359.48632 * 7 6 5 29 29 H 1.08001 * 120.07640 * 359.97438 * 4 3 2 30 30 H 1.08005 * 119.92680 * 179.97438 * 5 4 3 31 31 H 1.08000 * 119.85076 * 180.27719 * 6 5 4 32 32 H 1.08994 * 113.61184 * 25.45001 * 10 8 7 33 33 H 1.09000 * 113.61725 * 254.53970 * 10 8 7 34 34 H 0.96996 * 119.99331 * 287.50430 * 13 11 10 35 35 H 1.09000 * 109.46614 * 60.00843 * 16 14 13 36 36 H 1.08997 * 109.47706 * 300.01012 * 16 14 13 37 37 H 1.08001 * 120.03232 * 0.02562 * 19 18 17 38 38 H 1.09006 * 109.46662 * 304.72802 * 21 20 19 39 39 H 0.96709 * 113.99337 * 60.00344 * 22 21 20 40 40 H 1.48506 * 109.99834 * 180.02562 * 23 21 20 41 41 H 1.48502 * 110.00011 * 301.31529 * 23 21 20 42 42 H 1.08001 * 119.94174 * 180.27034 * 24 20 19 43 43 H 1.08005 * 119.97067 * 179.97438 * 25 24 20 44 44 H 1.08007 * 120.02472 * 179.97438 * 26 25 24 45 45 H 1.09002 * 113.61139 * 139.97733 * 27 11 10 46 46 H 1.08994 * 113.61582 * 270.80273 * 27 11 10 47 47 H 1.08000 * 120.07508 * 180.27826 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -0.8661 -0.8399 5 6 4.6493 -0.8599 -0.8352 6 6 5.3375 0.0064 -0.0047 7 6 4.6483 0.8646 0.8342 8 6 5.4066 1.8011 1.7392 9 1 4.7682 2.2843 2.4788 10 6 6.6831 1.1851 2.3359 11 6 7.3552 2.5486 2.1033 12 1 8.3813 2.4752 1.7427 13 7 7.2133 3.4729 3.2310 14 6 8.2753 3.7499 4.0131 15 8 9.3488 3.2343 3.7831 16 6 8.1294 4.7011 5.1728 17 8 9.3844 4.8301 5.8440 18 6 9.4257 5.6574 6.9213 19 6 10.6129 5.8333 7.6170 20 6 10.6508 6.6699 8.7160 21 6 11.9385 6.8563 9.4763 22 8 12.9020 7.4905 8.6330 23 14 11.6272 7.9205 10.9734 24 6 9.5096 7.3405 9.1152 25 6 8.3264 7.1712 8.4200 26 6 8.2817 6.3309 7.3247 27 6 6.3245 2.7778 0.9854 28 6 3.2691 0.8688 0.8397 29 1 2.7338 -1.5400 -1.4919 30 1 5.1934 -1.5302 -1.4842 31 1 6.4174 0.0104 -0.0082 32 1 7.1041 0.3820 1.7312 33 1 6.5886 0.9189 3.3886 34 1 6.3549 3.8854 3.4148 35 1 7.3842 4.3147 5.8681 36 1 7.8118 5.6767 4.8049 37 1 11.5057 5.3131 7.3028 38 1 12.3169 5.8845 9.7936 39 1 12.6312 8.3618 8.3124 40 1 12.8897 8.1123 11.7315 41 1 11.0808 9.2368 10.5562 42 1 9.5423 7.9974 9.9719 43 1 7.4361 7.6959 8.7341 44 1 7.3571 6.1987 6.7822 45 1 5.9404 3.7972 0.9479 46 1 6.6481 2.4113 0.0112 47 1 2.7325 1.5422 1.4916 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_4860298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:14 Heat of formation + Delta-G solvation = 15.387770 kcal Electronic energy + Delta-G solvation = -29845.500990 eV Core-core repulsion = 25540.510877 eV Total energy + Delta-G solvation = -4304.990113 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.75733 -41.26798 -40.41476 -39.31370 -38.70377 -37.46141 -37.31269 -34.70442 -32.49181 -32.23052 -32.17208 -31.48636 -29.25194 -26.85716 -26.64316 -26.03988 -24.84025 -23.67531 -22.99914 -22.64246 -21.64490 -20.72703 -19.37815 -18.95404 -18.53612 -17.72231 -17.46094 -17.34226 -17.22938 -17.02854 -16.73658 -16.40940 -16.20820 -15.90048 -15.54957 -15.49371 -15.16007 -15.09254 -14.85878 -14.72462 -14.43124 -14.16371 -14.13328 -14.02517 -13.96070 -13.78031 -13.50304 -13.37458 -13.00849 -12.95402 -12.78716 -12.60084 -12.48200 -12.09506 -11.99972 -11.74642 -11.66711 -11.58344 -11.20913 -11.01306 -10.65895 -10.14146 -9.93363 -9.90219 -9.65215 -9.27704 -4.90302 -0.18397 0.21593 0.38482 0.40303 1.28198 1.42973 1.49993 1.56970 1.61761 1.91479 1.97282 2.59760 2.67457 2.83400 2.86445 3.41550 3.50663 3.53503 3.67358 3.72261 3.76202 3.86162 3.94846 4.01692 4.02012 4.10877 4.13947 4.19897 4.20853 4.25727 4.33752 4.37375 4.52747 4.54966 4.66006 4.70589 4.79020 4.85019 4.90583 4.99308 5.02178 5.07086 5.09981 5.20060 5.25513 5.35790 5.38103 5.42908 5.46097 5.51374 5.68068 5.71474 5.90508 6.28790 6.40440 6.46868 6.47997 7.13789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.276 3.724 3 C -0.046 4.046 4 C -0.077 4.077 5 C -0.118 4.118 6 C -0.084 4.084 7 C -0.074 4.074 8 C -0.065 4.065 9 H 0.117 0.883 10 C -0.143 4.143 11 C 0.110 3.890 12 H 0.083 0.917 13 N -0.691 5.691 14 C 0.515 3.485 15 O -0.573 6.573 16 C 0.037 3.963 17 O -0.323 6.323 18 C 0.114 3.886 19 C -0.149 4.149 20 C -0.081 4.081 21 C -0.094 4.094 22 O -0.551 6.551 23 Si 0.785 3.215 24 C -0.159 4.159 25 C -0.071 4.071 26 C -0.201 4.201 27 C -0.123 4.123 28 C -0.066 4.066 29 H 0.139 0.861 30 H 0.153 0.847 31 H 0.148 0.852 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.422 0.578 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.386 0.614 40 H -0.306 1.306 41 H -0.275 1.275 42 H 0.147 0.853 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.090 0.910 46 H 0.105 0.895 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 2.273 1.092 4.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.038 4.038 3 C -0.050 4.050 4 C -0.097 4.097 5 C -0.136 4.136 6 C -0.103 4.103 7 C -0.074 4.074 8 C -0.083 4.083 9 H 0.135 0.865 10 C -0.181 4.181 11 C 0.005 3.995 12 H 0.101 0.899 13 N -0.345 5.345 14 C 0.301 3.699 15 O -0.451 6.451 16 C -0.041 4.041 17 O -0.237 6.237 18 C 0.069 3.931 19 C -0.168 4.168 20 C -0.082 4.082 21 C -0.202 4.202 22 O -0.359 6.359 23 Si 0.689 3.311 24 C -0.177 4.177 25 C -0.089 4.089 26 C -0.219 4.219 27 C -0.161 4.161 28 C -0.086 4.086 29 H 0.157 0.843 30 H 0.171 0.829 31 H 0.165 0.835 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.260 0.740 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.235 0.765 40 H -0.234 1.234 41 H -0.201 1.201 42 H 0.164 0.836 43 H 0.179 0.821 44 H 0.179 0.821 45 H 0.108 0.892 46 H 0.124 0.876 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.993 1.977 1.351 4.656 hybrid contribution 0.430 0.438 -1.156 1.309 sum -3.563 2.415 0.195 4.309 Atomic orbital electron populations 1.81326 1.13798 1.09898 1.09969 1.26165 0.93086 0.92264 0.92257 1.16104 0.82867 1.02779 1.03218 1.21404 0.95148 0.96602 0.96570 1.21371 0.93151 0.99501 0.99549 1.21596 1.01596 0.93509 0.93563 1.19690 0.92385 0.97653 0.97719 1.21622 0.94648 0.95266 0.96743 0.86516 1.23587 0.95471 0.96900 1.02158 1.21918 1.00262 0.90179 0.87138 0.89927 1.45341 1.12667 1.46874 1.29652 1.20534 0.84032 0.81714 0.83591 1.90773 1.28936 1.53391 1.72006 1.22743 0.86220 1.01312 0.93805 1.86124 1.34222 1.62228 1.41087 1.19187 0.95135 0.91370 0.87400 1.20309 0.96545 1.02575 0.97374 1.20114 0.96180 0.96470 0.95427 1.25455 0.87911 1.05576 1.01259 1.86587 1.44516 1.37020 1.67791 0.93858 0.81512 0.78551 0.77185 1.21247 0.92774 1.01816 1.01827 1.21326 0.98564 0.95792 0.93183 1.21636 0.97948 1.01102 1.01257 1.23403 0.94268 1.00823 0.97639 1.21217 0.94064 0.96634 0.96718 0.84343 0.82909 0.83454 0.88010 0.91268 0.74022 0.85551 0.85742 0.86993 0.86366 0.76454 1.23417 1.20137 0.83579 0.82061 0.82093 0.89157 0.87639 0.83944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -4.91 18.54 19.00 0.35 -4.56 16 2 C 0.28 1.06 15.33 88.33 1.35 2.41 16 3 C -0.05 0.12 5.73 -21.36 -0.12 -0.01 16 4 C -0.08 0.39 9.76 22.54 0.22 0.61 16 5 C -0.12 0.93 10.03 22.23 0.22 1.16 16 6 C -0.08 0.73 8.59 22.33 0.19 0.93 16 7 C -0.07 0.62 5.28 -19.90 -0.11 0.51 16 8 C -0.06 0.71 3.85 -11.01 -0.04 0.67 16 9 H 0.12 -1.62 8.09 -2.39 -0.02 -1.63 16 10 C -0.14 1.12 7.25 31.12 0.23 1.35 16 11 C 0.11 -0.67 4.32 45.52 0.20 -0.47 16 12 H 0.08 -0.02 7.46 -2.38 -0.02 -0.04 16 13 N -0.69 5.05 5.26 -440.03 -2.32 2.73 16 14 C 0.51 0.42 7.91 87.66 0.69 1.11 16 15 O -0.57 -7.52 16.10 15.98 0.26 -7.27 16 16 C 0.04 -0.17 5.22 71.24 0.37 0.21 16 17 O -0.32 -1.88 9.67 -73.37 -0.71 -2.59 16 18 C 0.11 0.38 6.69 22.51 0.15 0.53 16 19 C -0.15 -0.87 9.62 22.37 0.22 -0.65 16 20 C -0.08 -0.13 5.35 -19.88 -0.11 -0.24 16 21 C -0.09 -0.12 2.80 71.24 0.20 0.08 16 22 O -0.55 -2.80 12.83 -148.98 -1.91 -4.71 16 23 Si 0.78 -1.75 29.88 68.60 2.05 0.30 16 24 C -0.16 0.42 8.67 22.28 0.19 0.61 16 25 C -0.07 0.35 10.04 22.25 0.22 0.58 16 26 C -0.20 0.74 9.04 22.36 0.20 0.94 16 27 C -0.12 1.34 7.29 31.12 0.23 1.56 16 28 C -0.07 0.40 9.41 22.54 0.21 0.61 16 29 H 0.14 -0.94 8.06 -2.91 -0.02 -0.96 16 30 H 0.15 -1.78 8.06 -2.91 -0.02 -1.81 16 31 H 0.15 -1.76 6.67 -2.91 -0.02 -1.78 16 32 H 0.10 -0.87 6.33 -2.39 -0.02 -0.89 16 33 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 34 H 0.42 -6.32 8.70 -92.71 -0.81 -7.13 16 35 H 0.13 -1.41 7.66 -2.39 -0.02 -1.43 16 36 H 0.12 -1.36 7.66 -2.39 -0.02 -1.37 16 37 H 0.11 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.12 0.09 7.96 -2.38 -0.02 0.07 16 39 H 0.39 -0.44 8.70 -74.05 -0.64 -1.09 16 40 H -0.31 -1.79 7.11 99.48 0.71 -1.09 16 41 H -0.28 -0.06 7.01 99.48 0.70 0.64 16 42 H 0.15 -0.96 4.84 -2.91 -0.01 -0.98 16 43 H 0.16 -1.79 8.06 -2.91 -0.02 -1.81 16 44 H 0.16 -1.75 6.30 -2.91 -0.02 -1.77 16 45 H 0.09 -1.11 8.14 -2.39 -0.02 -1.13 16 46 H 0.11 -1.17 7.72 -2.39 -0.02 -1.19 16 47 H 0.14 -1.24 8.05 -2.91 -0.02 -1.26 16 Total: 0.00 -31.72 403.23 2.07 -29.66 By element: Atomic # 1 Polarization: -25.67 SS G_CDS: -0.38 Total: -26.05 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 4.72 Total: 12.49 kcal Atomic # 7 Polarization: 0.14 SS G_CDS: -1.96 Total: -1.82 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -2.36 Total: -14.57 kcal Atomic # 14 Polarization: -1.75 SS G_CDS: 2.05 Total: 0.30 kcal Total: -31.72 2.07 -29.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_4860298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.047 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds