Wall clock time and date at job start Tue Mar 9 2021 12:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39609 * 120.15102 * 66.73096 * 3 2 1 5 5 C 1.37969 * 119.84605 * 180.02562 * 4 3 2 6 6 C 1.38341 * 120.14668 * 359.74892 * 5 4 3 7 7 C 1.38380 * 120.30830 * 0.50970 * 6 5 4 8 8 C 1.50701 * 119.92557 * 179.76250 * 7 6 5 9 9 H 1.09002 * 112.85047 * 170.05973 * 8 7 6 10 10 C 1.53781 * 113.61772 * 301.25688 * 8 7 6 11 11 C 1.53777 * 87.08336 * 140.06093 * 10 8 7 12 12 H 1.08998 * 113.61354 * 219.93545 * 11 10 8 13 13 N 1.46500 * 113.61088 * 89.11940 * 11 10 8 14 14 C 1.34772 * 120.00149 * 155.00452 * 13 11 10 15 15 O 1.21280 * 119.99925 * 359.97438 * 14 13 11 16 16 C 1.50696 * 120.00417 * 179.97438 * 14 13 11 17 17 N 1.46497 * 109.47413 * 179.97438 * 16 14 13 18 18 C 1.36837 * 125.06242 * 265.02223 * 17 16 14 19 19 C 1.34239 * 109.93684 * 180.02562 * 18 17 16 20 20 C 1.50701 * 126.50120 * 180.02562 * 19 18 17 21 21 O 1.42891 * 109.47056 * 254.97203 * 20 19 18 22 22 Si 1.86304 * 109.46903 * 14.97527 * 20 19 18 23 23 C 1.46497 * 106.99954 * 0.02562 * 19 18 17 24 24 C 1.39586 * 134.03685 * 180.02562 * 23 19 18 25 25 C 1.36670 * 119.76154 * 179.23475 * 24 23 19 26 26 C 1.38789 * 120.52837 * 0.66207 * 25 24 23 27 27 C 1.37786 * 120.66482 * 359.57258 * 26 25 24 28 28 C 1.37693 * 125.06188 * 84.72264 * 17 16 14 29 29 C 1.53775 * 87.07992 * 334.56762 * 11 10 8 30 30 C 1.37928 * 120.15057 * 359.48854 * 7 6 5 31 31 H 1.08001 * 120.07839 * 0.04696 * 4 3 2 32 32 H 1.08001 * 119.92522 * 180.02562 * 5 4 3 33 33 H 1.08005 * 119.84384 * 180.25654 * 6 5 4 34 34 H 1.08997 * 113.61673 * 254.61641 * 10 8 7 35 35 H 1.09005 * 113.61396 * 25.51470 * 10 8 7 36 36 H 0.96999 * 119.99703 * 334.99353 * 13 11 10 37 37 H 1.08996 * 109.47225 * 299.99701 * 16 14 13 38 38 H 1.08999 * 109.47102 * 59.99481 * 16 14 13 39 39 H 1.07993 * 125.03242 * 0.02586 * 18 17 16 40 40 H 1.09003 * 109.47229 * 134.97190 * 20 19 18 41 41 H 0.96705 * 114.00089 * 60.00542 * 21 20 19 42 42 H 1.48493 * 109.99837 * 180.02562 * 22 20 19 43 43 H 1.48501 * 109.99899 * 301.31877 * 22 20 19 44 44 H 1.08004 * 120.11691 * 359.97438 * 24 23 19 45 45 H 1.08000 * 119.73230 * 180.20655 * 25 24 23 46 46 H 1.07994 * 119.66422 * 179.59798 * 26 25 24 47 47 H 1.07998 * 120.10865 * 179.97438 * 27 26 25 48 48 H 1.08993 * 113.61636 * 270.87622 * 29 11 10 49 49 H 1.09008 * 113.61006 * 139.97865 * 29 11 10 50 50 H 1.08001 * 120.07402 * 180.27470 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2695 -0.4760 -1.1090 5 6 4.6492 -0.4729 -1.1021 6 6 5.3373 0.0058 -0.0015 7 6 4.6484 0.4747 1.1032 8 6 5.4068 0.9892 2.2995 9 1 4.7642 1.4856 3.0266 10 6 6.3536 -0.0502 2.9224 11 6 7.3614 1.0960 3.1101 12 1 8.3920 0.8101 2.8999 13 7 7.2159 1.8024 4.3853 14 6 8.2690 2.4513 4.9203 15 8 9.3373 2.4501 4.3462 16 6 8.1192 3.1784 6.2317 17 7 9.3963 3.7967 6.5960 18 6 10.3341 3.2365 7.4201 19 6 11.3847 4.0626 7.5462 20 6 12.6257 3.8161 8.3648 21 8 12.5792 4.6107 9.5515 22 14 12.7166 2.0137 8.8275 23 6 11.0959 5.2492 6.7372 24 6 11.7865 6.4323 6.4690 25 6 11.2363 7.3649 5.6351 26 6 9.9898 7.1514 5.0634 27 6 9.2888 5.9930 5.3184 28 6 9.8344 5.0255 6.1555 29 6 6.6626 1.7979 1.9338 30 6 3.2691 0.4775 1.1096 31 1 2.7334 -0.8458 -1.9705 32 1 5.1931 -0.8409 -1.9595 33 1 6.4174 0.0097 -0.0030 34 1 5.9874 -0.4677 3.8603 35 1 6.6869 -0.8139 2.2196 36 1 6.3614 1.8031 4.8445 37 1 7.3562 3.9506 6.1339 38 1 7.8237 2.4718 7.0072 39 1 10.2426 2.2725 7.8983 40 1 13.5057 4.0861 7.7810 41 1 11.8201 4.4236 10.1207 42 1 13.9358 1.7576 9.6355 43 1 11.5071 1.6252 9.5966 44 1 12.7576 6.6047 6.9093 45 1 11.7726 8.2786 5.4253 46 1 9.5653 7.9007 4.4117 47 1 8.3193 5.8364 4.8691 48 1 7.0804 1.5397 0.9608 49 1 6.5459 2.8727 2.0737 50 1 2.7327 0.8478 1.9707 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14329782_9818708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:59 Heat of formation + Delta-G solvation = 93.278037 kcal Electronic energy + Delta-G solvation = -33688.227144 eV Core-core repulsion = 29227.880988 eV Total energy + Delta-G solvation = -4460.346156 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.52316 -41.50324 -40.38558 -39.03324 -38.13220 -37.67288 -37.42901 -34.66448 -33.99231 -32.22904 -32.05441 -31.29162 -30.22310 -28.94061 -26.61398 -26.37147 -25.57446 -24.80321 -23.75086 -22.92317 -22.65360 -21.79328 -20.74289 -20.60182 -19.01023 -18.62743 -18.39790 -17.71090 -17.33114 -17.26843 -16.83165 -16.45509 -16.39725 -16.25111 -16.09951 -15.81319 -15.47009 -15.38911 -15.17727 -14.95975 -14.80739 -14.69267 -14.53790 -14.26965 -14.16284 -14.05661 -14.01838 -13.78186 -13.60632 -13.40149 -13.19852 -12.88368 -12.78740 -12.70046 -12.54996 -12.47830 -12.38221 -11.98603 -11.74057 -11.72022 -11.63602 -11.18561 -11.09066 -10.53071 -10.43568 -10.06826 -9.90100 -9.64579 -9.14155 -8.61463 -4.85139 -0.18335 0.16017 0.38628 0.65842 1.36662 1.43449 1.51178 1.56773 1.59656 1.70757 1.91423 1.99107 2.24276 2.83273 2.86613 2.96919 3.53986 3.55243 3.63014 3.68763 3.73468 3.75112 3.82566 3.86587 3.95779 4.03909 4.06759 4.17439 4.20253 4.21919 4.23707 4.31920 4.34080 4.51771 4.53328 4.60619 4.73528 4.73621 4.80017 4.80825 4.86921 4.90856 4.94227 5.03590 5.08207 5.11671 5.15640 5.23338 5.36064 5.43550 5.52657 5.54440 5.68221 5.71325 5.75340 5.77014 5.90772 6.21166 6.25866 6.40184 6.53243 6.61635 7.20832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.276 3.724 3 C -0.046 4.046 4 C -0.077 4.077 5 C -0.118 4.118 6 C -0.084 4.084 7 C -0.075 4.075 8 C -0.066 4.066 9 H 0.115 0.885 10 C -0.124 4.124 11 C 0.115 3.885 12 H 0.083 0.917 13 N -0.695 5.695 14 C 0.495 3.505 15 O -0.566 6.566 16 C 0.086 3.914 17 N -0.465 5.465 18 C 0.075 3.925 19 C -0.216 4.216 20 C -0.051 4.051 21 O -0.554 6.554 22 Si 0.766 3.234 23 C -0.116 4.116 24 C -0.088 4.088 25 C -0.154 4.154 26 C -0.108 4.108 27 C -0.133 4.133 28 C 0.092 3.908 29 C -0.143 4.143 30 C -0.067 4.067 31 H 0.138 0.862 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.420 0.580 37 H 0.142 0.858 38 H 0.161 0.839 39 H 0.197 0.803 40 H 0.103 0.897 41 H 0.384 0.616 42 H -0.303 1.303 43 H -0.259 1.259 44 H 0.118 0.882 45 H 0.135 0.865 46 H 0.145 0.855 47 H 0.133 0.867 48 H 0.098 0.902 49 H 0.066 0.934 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.600 -4.144 -0.480 4.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.038 4.038 3 C -0.050 4.050 4 C -0.098 4.098 5 C -0.136 4.136 6 C -0.102 4.102 7 C -0.075 4.075 8 C -0.084 4.084 9 H 0.133 0.867 10 C -0.162 4.162 11 C 0.009 3.991 12 H 0.102 0.898 13 N -0.348 5.348 14 C 0.281 3.719 15 O -0.443 6.443 16 C -0.039 4.039 17 N -0.148 5.148 18 C -0.050 4.050 19 C -0.224 4.224 20 C -0.160 4.160 21 O -0.362 6.362 22 Si 0.669 3.331 23 C -0.120 4.120 24 C -0.107 4.107 25 C -0.173 4.173 26 C -0.127 4.127 27 C -0.153 4.153 28 C -0.013 4.013 29 C -0.181 4.181 30 C -0.087 4.087 31 H 0.156 0.844 32 H 0.171 0.829 33 H 0.166 0.834 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.258 0.742 37 H 0.160 0.840 38 H 0.179 0.821 39 H 0.214 0.786 40 H 0.121 0.879 41 H 0.232 0.768 42 H -0.231 1.231 43 H -0.184 1.184 44 H 0.136 0.864 45 H 0.153 0.847 46 H 0.162 0.838 47 H 0.151 0.849 48 H 0.117 0.883 49 H 0.085 0.915 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.362 -4.641 -0.559 5.237 hybrid contribution -0.495 0.982 0.666 1.286 sum -2.857 -3.659 0.107 4.643 Atomic orbital electron populations 1.81323 1.13823 1.10662 1.09217 1.26180 0.93106 0.92210 0.92305 1.16111 0.82843 1.07715 0.98315 1.21403 0.95176 0.96577 0.96611 1.21376 0.93129 0.99365 0.99700 1.21587 1.01586 0.94879 0.92164 1.19715 0.92357 0.99112 0.96279 1.21626 0.94700 0.97255 0.94792 0.86703 1.23394 0.94350 0.95898 1.02515 1.21842 1.00050 0.93673 0.83539 0.89843 1.45496 1.13720 1.52665 1.22945 1.21326 0.84023 0.79131 0.87453 1.90809 1.28759 1.61410 1.63370 1.21986 0.84939 1.00813 0.96116 1.43432 1.16902 1.14274 1.40168 1.22007 0.88394 0.99092 0.95531 1.20704 0.98911 0.95844 1.06898 1.24589 0.96654 1.08550 0.86160 1.86562 1.51587 1.63674 1.34331 0.94062 0.77584 0.75195 0.86247 1.19337 0.95246 0.96160 1.01274 1.20446 0.99568 0.92690 0.97986 1.20913 0.96921 1.00257 0.99208 1.21124 0.94738 0.96992 0.99820 1.20238 1.01428 0.93488 1.00162 1.18384 0.95053 0.88013 0.99843 1.23568 0.95554 0.99901 0.99120 1.21220 0.94121 0.96728 0.96655 0.84380 0.82892 0.83432 0.89168 0.87834 0.74244 0.84049 0.82120 0.78593 0.87905 0.76758 1.23075 1.18449 0.86442 0.84700 0.83764 0.84880 0.88321 0.91490 0.84030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -4.84 18.54 19.01 0.35 -4.48 16 2 C 0.28 1.00 15.33 88.33 1.35 2.36 16 3 C -0.05 0.13 5.73 -21.36 -0.12 0.01 16 4 C -0.08 0.42 9.76 22.54 0.22 0.64 16 5 C -0.12 0.99 10.03 22.23 0.22 1.22 16 6 C -0.08 0.78 8.55 22.33 0.19 0.97 16 7 C -0.07 0.66 5.29 -19.90 -0.11 0.56 16 8 C -0.07 0.79 3.85 -11.01 -0.04 0.75 16 9 H 0.11 -1.68 8.08 -2.39 -0.02 -1.70 16 10 C -0.12 1.54 7.29 31.12 0.23 1.76 16 11 C 0.11 -0.97 4.32 45.51 0.20 -0.78 16 12 H 0.08 -0.24 7.46 -2.39 -0.02 -0.26 16 13 N -0.70 7.32 5.26 -440.07 -2.32 5.01 16 14 C 0.50 -2.02 7.90 87.66 0.69 -1.33 16 15 O -0.57 -4.19 16.02 -3.03 -0.05 -4.24 16 16 C 0.09 -0.78 6.48 85.63 0.56 -0.22 16 17 N -0.47 -0.10 2.27 -520.01 -1.18 -1.28 16 18 C 0.08 0.01 9.89 83.00 0.82 0.83 16 19 C -0.22 -1.05 5.58 -18.62 -0.10 -1.15 16 20 C -0.05 -0.18 3.06 71.24 0.22 0.04 16 21 O -0.55 -3.43 12.88 -148.98 -1.92 -5.35 16 22 Si 0.77 -0.78 30.82 68.60 2.11 1.33 16 23 C -0.12 -1.04 6.35 -20.20 -0.13 -1.17 16 24 C -0.09 -0.79 10.05 22.23 0.22 -0.56 16 25 C -0.15 -0.93 9.97 22.03 0.22 -0.71 16 26 C -0.11 -0.44 10.01 22.29 0.22 -0.22 16 27 C -0.13 -0.54 10.00 22.37 0.22 -0.32 16 28 C 0.09 0.56 6.79 39.03 0.27 0.82 16 29 C -0.14 1.31 7.25 31.12 0.23 1.54 16 30 C -0.07 0.43 9.41 22.54 0.21 0.64 16 31 H 0.14 -0.98 8.06 -2.91 -0.02 -1.00 16 32 H 0.15 -1.87 8.06 -2.91 -0.02 -1.89 16 33 H 0.15 -1.87 6.70 -2.91 -0.02 -1.89 16 34 H 0.09 -1.26 8.14 -2.39 -0.02 -1.28 16 35 H 0.10 -1.29 7.65 -2.38 -0.02 -1.30 16 36 H 0.42 -7.32 8.70 -92.71 -0.81 -8.13 16 37 H 0.14 -1.93 8.14 -2.39 -0.02 -1.95 16 38 H 0.16 -2.71 8.12 -2.39 -0.02 -2.73 16 39 H 0.20 -1.32 6.27 -2.91 -0.02 -1.34 16 40 H 0.10 0.48 7.96 -2.39 -0.02 0.46 16 41 H 0.38 -0.19 8.70 -74.05 -0.64 -0.83 16 42 H -0.30 -2.06 7.11 99.48 0.71 -1.36 16 43 H -0.26 0.31 7.00 99.48 0.70 1.00 16 44 H 0.12 0.96 8.06 -2.91 -0.02 0.93 16 45 H 0.14 0.28 8.06 -2.91 -0.02 0.26 16 46 H 0.14 -0.14 8.06 -2.91 -0.02 -0.16 16 47 H 0.13 -0.12 8.06 -2.91 -0.02 -0.14 16 48 H 0.10 -0.93 6.38 -2.39 -0.02 -0.95 16 49 H 0.07 -0.46 8.14 -2.38 -0.02 -0.48 16 50 H 0.14 -1.27 8.05 -2.91 -0.02 -1.29 16 Total: 0.00 -31.74 429.63 2.37 -29.37 By element: Atomic # 1 Polarization: -25.61 SS G_CDS: -0.42 Total: -26.02 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 5.79 Total: 5.67 kcal Atomic # 7 Polarization: 2.38 SS G_CDS: -3.14 Total: -0.76 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -1.97 Total: -9.59 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: 2.11 Total: 1.33 kcal Total: -31.74 2.37 -29.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14329782_9818708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.648 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds