Wall clock time and date at job start Tue Mar 9 2021 12:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42911 * 1 3 3 Si 1.86298 * 109.46937 * 2 1 4 4 C 1.50703 * 109.46807 * 120.00070 * 2 1 3 5 5 C 1.34850 * 125.88970 * 245.04331 * 4 2 1 6 6 C 1.40891 * 107.42017 * 179.73816 * 5 4 2 7 7 C 1.34855 * 107.41114 * 0.37169 * 6 5 4 8 8 C 1.50698 * 125.88468 * 179.88789 * 7 6 5 9 9 C 1.50706 * 109.47294 * 274.69085 * 8 7 6 10 10 O 1.21279 * 119.99507 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00020 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99544 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47059 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47571 * 180.02562 * 13 12 11 15 15 H 1.09009 * 112.84387 * 314.66269 * 14 13 12 16 16 C 1.53773 * 113.61836 * 85.85632 * 14 13 12 17 17 C 1.53960 * 87.02019 * 139.95527 * 16 14 13 18 18 H 1.08999 * 113.74400 * 220.06251 * 17 16 14 19 19 F 1.39898 * 113.53528 * 89.18888 * 17 16 14 20 20 C 1.53782 * 113.61762 * 183.47263 * 14 13 12 21 21 N 1.36333 * 125.89321 * 64.99975 * 4 2 1 22 22 H 0.96700 * 113.99598 * 300.00213 * 1 2 3 23 23 H 1.08996 * 109.47162 * 239.99527 * 2 1 3 24 24 H 1.48496 * 109.99724 * 178.67868 * 3 2 1 25 25 H 1.48495 * 110.00014 * 299.99774 * 3 2 1 26 26 H 1.08006 * 126.29102 * 359.93987 * 5 4 2 27 27 H 1.07990 * 126.29517 * 180.24084 * 6 5 4 28 28 H 1.09001 * 109.46665 * 154.69466 * 8 7 6 29 29 H 1.09000 * 109.47722 * 34.69798 * 8 7 6 30 30 H 0.96994 * 119.99756 * 0.02562 * 11 9 8 31 31 H 1.08996 * 109.47366 * 299.99598 * 12 11 9 32 32 H 1.08992 * 109.47635 * 60.00246 * 12 11 9 33 33 H 1.09004 * 109.46832 * 299.99894 * 13 12 11 34 34 H 1.09001 * 109.47420 * 59.99456 * 13 12 11 35 35 H 1.08991 * 113.61916 * 254.53321 * 16 14 13 36 36 H 1.09002 * 113.61243 * 25.44138 * 16 14 13 37 37 H 1.09001 * 113.60848 * 334.55926 * 20 14 13 38 38 H 1.08990 * 113.61574 * 105.46449 * 20 14 13 39 39 H 0.97003 * 125.63450 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 2.6294 -0.1485 2.2382 6 6 2.8920 -1.1590 3.1842 7 6 2.3515 -2.3018 2.7146 8 6 2.3914 -3.6441 3.3984 9 6 3.6786 -4.3467 3.0512 10 8 4.4844 -3.8100 2.3208 11 7 3.9343 -5.5714 3.5524 12 6 5.1859 -6.2541 3.2153 13 6 5.2258 -7.6175 3.9084 14 6 6.5332 -8.3303 3.5569 15 1 6.7735 -8.2743 2.4951 16 6 7.7073 -7.9520 4.4750 17 6 8.1116 -9.4370 4.4359 18 1 8.4549 -9.8238 5.3953 19 9 8.9758 -9.7531 3.3820 20 6 6.6360 -9.7506 4.1376 21 7 1.7577 -2.0319 1.5174 22 1 -0.3933 0.4417 0.7651 23 1 1.7924 -0.5139 -0.8899 24 1 3.5346 1.7703 0.0322 25 1 1.5616 2.4678 -1.2085 26 1 2.9291 0.8867 2.3088 27 1 3.4293 -1.0407 4.1135 28 1 1.5469 -4.2470 3.0647 29 1 2.3336 -3.5039 4.4778 30 1 3.2896 -6.0007 4.1362 31 1 5.2442 -6.3939 2.1359 32 1 6.0301 -5.6513 3.5497 33 1 5.1673 -7.4781 4.9879 34 1 4.3816 -8.2202 3.5736 35 1 8.4330 -7.2884 4.0049 36 1 7.3969 -7.6099 5.4623 37 1 6.0321 -9.9011 5.0325 38 1 6.4980 -10.5368 3.3955 39 1 1.2889 -2.6740 0.9615 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14412250_14644196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:23 Heat of formation + Delta-G solvation = -57.253481 kcal Electronic energy + Delta-G solvation = -21353.693377 eV Core-core repulsion = 17792.364503 eV Total energy + Delta-G solvation = -3561.328874 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.63169 -42.27310 -40.56762 -39.46678 -37.66727 -36.06274 -33.33950 -31.87255 -31.72772 -29.32802 -27.03767 -26.17513 -24.86043 -23.00164 -21.91549 -21.27539 -20.96499 -20.55011 -18.91938 -18.17378 -17.43025 -17.21337 -16.89781 -16.80770 -16.41332 -16.12646 -16.01669 -15.66216 -15.18861 -14.96979 -14.67830 -14.47495 -14.20715 -13.99780 -13.88182 -13.76513 -13.70077 -13.51389 -13.17874 -12.85797 -12.58278 -12.15498 -11.99692 -11.95026 -11.88540 -11.35115 -11.23593 -10.84625 -10.58712 -10.13139 -9.70162 -8.88781 -4.94602 1.17763 1.29640 1.63933 1.75277 1.92819 2.02225 2.28699 2.53060 3.12494 3.17341 3.43563 3.48172 3.53404 3.63212 3.71167 3.85179 3.85901 3.99180 4.02837 4.14696 4.27433 4.35151 4.42593 4.44718 4.48530 4.60211 4.61975 4.65774 4.77407 4.83920 4.87236 4.95105 4.99760 5.32433 5.33196 5.35778 5.36848 6.07186 6.21426 6.40736 6.54877 6.67504 7.21209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.050 4.050 3 Si 0.720 3.280 4 C -0.010 4.010 5 C -0.187 4.187 6 C -0.173 4.173 7 C 0.036 3.964 8 C -0.072 4.072 9 C 0.509 3.491 10 O -0.523 6.523 11 N -0.735 5.735 12 C 0.119 3.881 13 C -0.120 4.120 14 C -0.108 4.108 15 H 0.098 0.902 16 C -0.160 4.160 17 C 0.061 3.939 18 H 0.097 0.903 19 F -0.197 7.197 20 C -0.157 4.157 21 N -0.536 5.536 22 H 0.381 0.619 23 H 0.109 0.891 24 H -0.255 1.255 25 H -0.256 1.256 26 H 0.142 0.858 27 H 0.136 0.864 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.401 0.599 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.036 -1.974 6.077 7.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.160 4.160 3 Si 0.620 3.380 4 C -0.124 4.124 5 C -0.212 4.212 6 C -0.198 4.198 7 C -0.078 4.078 8 C -0.112 4.112 9 C 0.294 3.706 10 O -0.398 6.398 11 N -0.388 5.388 12 C -0.004 4.004 13 C -0.158 4.158 14 C -0.126 4.126 15 H 0.116 0.884 16 C -0.197 4.197 17 C 0.025 3.975 18 H 0.115 0.885 19 F -0.178 7.178 20 C -0.195 4.195 21 N -0.130 5.130 22 H 0.229 0.771 23 H 0.127 0.873 24 H -0.179 1.179 25 H -0.181 1.181 26 H 0.160 0.840 27 H 0.154 0.846 28 H 0.118 0.882 29 H 0.136 0.864 30 H 0.235 0.765 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.913 -1.401 4.426 5.481 hybrid contribution -0.315 -1.381 -0.155 1.425 sum -3.228 -2.782 4.270 6.033 Atomic orbital electron populations 1.86482 1.17414 1.81808 1.49494 1.24837 0.84863 1.10754 0.95576 0.94156 0.81072 0.76286 0.86466 1.20826 1.07306 0.84507 0.99745 1.20647 1.05465 0.99607 0.95441 1.20590 1.05790 0.91878 1.01548 1.19476 1.04124 0.95309 0.88899 1.20130 0.96337 0.92212 1.02547 1.20626 0.88532 0.81071 0.80324 1.90778 1.48216 1.65133 1.35654 1.46014 1.22150 1.18529 1.52085 1.21357 0.86331 0.92560 1.00189 1.21767 0.98011 0.94976 1.01017 1.22510 0.94410 0.95265 1.00453 0.88358 1.23712 0.98660 0.95924 1.01440 1.22424 0.89107 0.97477 0.88512 0.88526 1.92829 1.71425 1.93787 1.59743 1.23611 0.95470 0.97750 1.02674 1.41792 1.44300 1.09152 1.17775 0.77125 0.87335 1.17920 1.18108 0.84047 0.84570 0.88235 0.86439 0.76509 0.91497 0.91235 0.90788 0.90791 0.89953 0.88156 0.88151 0.89993 0.75147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.34 12.88 -35.23 -0.45 -0.79 16 2 C -0.05 -0.04 3.08 36.01 0.11 0.07 16 3 Si 0.72 -0.18 30.60 -169.99 -5.20 -5.38 16 4 C -0.01 -0.02 6.50 -81.79 -0.53 -0.55 16 5 C -0.19 -0.38 9.37 -39.78 -0.37 -0.76 16 6 C -0.17 -0.42 10.77 -39.78 -0.43 -0.84 16 7 C 0.04 0.05 5.66 -81.79 -0.46 -0.41 16 8 C -0.07 0.12 6.24 -29.03 -0.18 -0.06 16 9 C 0.51 0.54 7.82 -10.98 -0.09 0.45 16 10 O -0.52 -3.25 16.03 5.56 0.09 -3.16 16 11 N -0.73 1.33 5.56 -60.30 -0.33 0.99 16 12 C 0.12 -0.13 5.67 -4.04 -0.02 -0.15 16 13 C -0.12 0.41 5.15 -26.73 -0.14 0.27 16 14 C -0.11 0.23 3.61 -89.81 -0.32 -0.10 16 15 H 0.10 -0.09 8.14 -51.92 -0.42 -0.52 16 16 C -0.16 0.31 7.54 -25.83 -0.19 0.11 16 17 C 0.06 -0.06 5.70 -25.82 -0.15 -0.21 16 18 H 0.10 -0.24 8.14 -51.93 -0.42 -0.66 16 19 F -0.20 -0.51 17.38 2.25 0.04 -0.47 16 20 C -0.16 0.37 7.54 -25.92 -0.20 0.17 16 21 N -0.54 -0.79 6.07 -5.44 -0.03 -0.82 16 22 H 0.38 -1.20 8.70 45.56 0.40 -0.80 16 23 H 0.11 0.15 7.96 -51.93 -0.41 -0.26 16 24 H -0.25 -0.69 7.11 56.52 0.40 -0.29 16 25 H -0.26 -0.66 7.11 56.52 0.40 -0.25 16 26 H 0.14 0.02 6.24 -52.48 -0.33 -0.31 16 27 H 0.14 0.16 8.06 -52.49 -0.42 -0.26 16 28 H 0.10 -0.40 8.14 -51.93 -0.42 -0.82 16 29 H 0.12 -0.47 8.14 -51.93 -0.42 -0.89 16 30 H 0.40 -1.98 8.47 -40.82 -0.35 -2.33 16 31 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 32 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.07 -0.32 7.87 -51.93 -0.41 -0.73 16 34 H 0.07 -0.28 8.14 -51.93 -0.42 -0.71 16 35 H 0.08 -0.07 8.14 -51.93 -0.42 -0.50 16 36 H 0.10 -0.34 7.92 -51.93 -0.41 -0.75 16 37 H 0.10 -0.39 8.10 -51.93 -0.42 -0.81 16 38 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 39 H 0.41 -0.06 8.96 -40.82 -0.37 -0.43 16 LS Contribution 332.94 15.07 5.02 5.02 Total: 0.00 -9.70 332.94 -9.57 -19.27 By element: Atomic # 1 Polarization: -6.94 SS G_CDS: -5.72 Total: -12.67 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.97 Total: -2.00 kcal Atomic # 7 Polarization: 0.54 SS G_CDS: -0.37 Total: 0.18 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: -0.36 Total: -3.95 kcal Atomic # 9 Polarization: -0.51 SS G_CDS: 0.04 Total: -0.47 kcal Atomic # 14 Polarization: -0.18 SS G_CDS: -5.20 Total: -5.38 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -9.70 -9.57 -19.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_14644196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.984 kcal (2) G-P(sol) polarization free energy of solvation -9.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds