Wall clock time and date at job start Tue Mar 9 2021 12:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86301 * 109.47182 * 2 1 4 4 C 1.50696 * 109.47185 * 119.99778 * 2 1 3 5 5 C 1.38274 * 119.94301 * 65.00307 * 4 2 1 6 6 C 1.38141 * 120.05552 * 180.27916 * 5 4 2 7 7 C 1.38738 * 119.94395 * 359.44290 * 6 5 4 8 8 O 1.35898 * 120.05510 * 180.29870 * 7 6 5 9 9 C 1.42901 * 117.00084 * 0.27943 * 8 7 6 10 10 C 1.50701 * 109.47116 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99697 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00084 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00186 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47261 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47105 * 179.97438 * 14 13 12 16 16 H 1.09006 * 112.85026 * 43.80794 * 15 14 13 17 17 C 1.53778 * 113.61490 * 174.99895 * 15 14 13 18 18 C 1.53777 * 87.08541 * 139.98121 * 17 15 14 19 19 H 1.08994 * 113.61671 * 220.02115 * 18 17 15 20 20 F 1.39903 * 113.61123 * 89.11196 * 18 17 15 21 21 C 1.53773 * 113.61627 * 272.49874 * 15 14 13 22 22 C 1.38730 * 119.88604 * 0.57278 * 7 6 5 23 23 C 1.38149 * 119.94512 * 359.70901 * 22 7 6 24 24 H 0.96702 * 114.00258 * 300.00375 * 1 2 3 25 25 H 1.08998 * 109.47382 * 240.00321 * 2 1 3 26 26 H 1.48498 * 110.00262 * 178.67946 * 3 2 1 27 27 H 1.48500 * 109.99835 * 300.00120 * 3 2 1 28 28 H 1.08002 * 119.96836 * 359.97438 * 5 4 2 29 29 H 1.07998 * 120.02987 * 179.70379 * 6 5 4 30 30 H 1.08998 * 109.47080 * 299.99770 * 9 8 7 31 31 H 1.08996 * 109.47179 * 59.99778 * 9 8 7 32 32 H 0.97001 * 120.00279 * 359.97438 * 12 10 9 33 33 H 1.08998 * 109.46884 * 299.99814 * 13 12 10 34 34 H 1.09002 * 109.47477 * 59.99359 * 13 12 10 35 35 H 1.08998 * 109.47179 * 299.99828 * 14 13 12 36 36 H 1.08996 * 109.47038 * 59.99809 * 14 13 12 37 37 H 1.09002 * 113.61694 * 254.53655 * 17 15 14 38 38 H 1.09007 * 113.61697 * 25.34963 * 17 15 14 39 39 H 1.09004 * 113.61372 * 334.56199 * 21 15 14 40 40 H 1.08998 * 113.61757 * 105.46914 * 21 15 14 41 41 H 1.07997 * 120.02650 * 179.67529 * 22 7 6 42 42 H 1.07997 * 119.96847 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2304 5 6 1.6841 -2.0605 1.3972 6 6 2.1385 -2.7127 2.5270 7 6 2.8535 -2.0145 3.4893 8 8 3.3068 -2.6552 4.5987 9 6 3.0162 -4.0502 4.7065 10 6 3.5938 -4.5858 5.9913 11 8 4.1955 -3.8459 6.7405 12 7 3.4425 -5.8872 6.3071 13 6 4.0035 -6.4078 7.5563 14 6 3.6924 -7.9014 7.6717 15 6 4.2789 -8.4452 8.9761 16 1 4.1017 -7.7870 9.8267 17 6 3.9172 -9.9148 9.2486 18 6 5.3587 -10.0942 9.7530 19 1 5.8127 -11.0380 9.4510 20 9 5.5120 -9.8282 11.1179 21 6 5.7390 -8.9102 8.8483 22 6 3.1000 -0.6598 3.3198 23 6 2.6383 -0.0109 2.1909 24 1 -0.3934 0.4417 0.7650 25 1 1.7924 -0.5138 -0.8900 26 1 3.5346 1.7703 0.0322 27 1 1.5615 2.4679 -1.2085 28 1 1.1309 -2.6045 0.6459 29 1 1.9410 -3.7663 2.6591 30 1 1.9362 -4.1975 4.7040 31 1 3.4571 -4.5795 3.8618 32 1 2.9616 -6.4791 5.7077 33 1 5.0834 -6.2600 7.5590 34 1 3.5623 -5.8788 8.4011 35 1 2.6125 -8.0489 7.6692 36 1 4.1334 -8.4306 6.8270 37 1 3.1635 -10.0421 10.0257 38 1 3.6948 -10.4844 8.3462 39 1 6.0163 -9.2056 7.8363 40 1 6.4564 -8.2265 9.3023 41 1 3.6518 -0.1129 4.0699 42 1 2.8297 1.0438 2.0588 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_2989410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:36 Heat of formation + Delta-G solvation = -103.515549 kcal Electronic energy + Delta-G solvation = -24077.880224 eV Core-core repulsion = 20133.062855 eV Total energy + Delta-G solvation = -3944.817369 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.67739 -41.56008 -40.63692 -39.43462 -38.94863 -37.12459 -36.16735 -32.52110 -32.06843 -31.76697 -29.41918 -26.84594 -26.34244 -25.66473 -23.98105 -22.87755 -22.39281 -21.66937 -20.43165 -19.48104 -18.49803 -18.12398 -17.54077 -17.43177 -17.03472 -16.78166 -16.53396 -16.38665 -16.32218 -15.88919 -15.84248 -15.47906 -15.27844 -14.94231 -14.69501 -14.56004 -14.21956 -14.02344 -13.81872 -13.55507 -13.42253 -13.31590 -13.09766 -12.55421 -12.25847 -12.17353 -12.06186 -11.96939 -11.81335 -11.71714 -11.24316 -11.16263 -10.89408 -10.40533 -10.24460 -10.04519 -9.23474 -4.99291 0.25651 0.32624 1.33747 1.40973 1.47217 1.64247 1.96933 2.58583 2.65663 3.28192 3.34767 3.50755 3.58352 3.60757 3.72163 3.74044 3.82436 3.87252 3.94592 4.01488 4.05106 4.11419 4.24820 4.28969 4.40630 4.43599 4.57914 4.59246 4.60304 4.72826 4.74178 4.82615 4.92891 4.99821 5.02497 5.11408 5.17085 5.18369 5.28546 5.31373 5.48827 5.49451 5.67269 6.25114 6.44452 6.79554 7.09685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.064 4.064 3 Si 0.765 3.235 4 C -0.162 4.162 5 C -0.059 4.059 6 C -0.206 4.206 7 C 0.119 3.881 8 O -0.319 6.319 9 C 0.038 3.962 10 C 0.510 3.490 11 O -0.576 6.576 12 N -0.709 5.709 13 C 0.119 3.881 14 C -0.106 4.106 15 C -0.110 4.110 16 H 0.080 0.920 17 C -0.147 4.147 18 C 0.042 3.958 19 H 0.113 0.887 20 F -0.222 7.222 21 C -0.158 4.158 22 C -0.160 4.160 23 C -0.076 4.076 24 H 0.395 0.605 25 H 0.108 0.892 26 H -0.289 1.289 27 H -0.300 1.300 28 H 0.139 0.861 29 H 0.157 0.843 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.422 0.578 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.066 0.934 41 H 0.136 0.864 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.801 -5.441 -2.924 7.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.174 4.174 3 Si 0.672 3.328 4 C -0.163 4.163 5 C -0.077 4.077 6 C -0.224 4.224 7 C 0.074 3.926 8 O -0.233 6.233 9 C -0.039 4.039 10 C 0.296 3.704 11 O -0.455 6.455 12 N -0.363 5.363 13 C -0.004 4.004 14 C -0.144 4.144 15 C -0.129 4.129 16 H 0.099 0.901 17 C -0.185 4.185 18 C 0.006 3.994 19 H 0.130 0.870 20 F -0.203 7.203 21 C -0.195 4.195 22 C -0.179 4.179 23 C -0.093 4.093 24 H 0.245 0.755 25 H 0.125 0.875 26 H -0.216 1.216 27 H -0.228 1.228 28 H 0.157 0.843 29 H 0.175 0.825 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.261 0.739 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.084 0.916 41 H 0.153 0.847 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.696 -4.565 -3.137 6.161 hybrid contribution 0.136 -0.744 -0.051 0.758 sum -2.560 -5.309 -3.189 6.702 Atomic orbital electron populations 1.86460 1.17262 1.82122 1.50536 1.24994 0.85189 1.10152 0.97075 0.93819 0.77920 0.76080 0.84952 1.20345 1.02630 0.95462 0.97851 1.21011 0.96366 0.93664 0.96646 1.21534 1.03441 1.01943 0.95517 1.19252 0.94607 0.92585 0.86175 1.86125 1.74231 1.23148 1.39757 1.22717 1.03575 0.80930 0.96718 1.20589 0.79642 0.82753 0.87453 1.90769 1.42992 1.58633 1.53066 1.45688 1.57711 1.08792 1.24138 1.21385 0.98391 0.95247 0.85400 1.21688 1.02822 0.92179 0.97662 1.22480 0.95701 0.96454 0.98312 0.90125 1.23613 0.95207 0.96446 1.03222 1.22750 1.00137 1.00852 0.75632 0.86952 1.92776 1.96702 1.95655 1.35197 1.23736 0.97322 0.96984 1.01505 1.20598 1.04919 0.92183 1.00150 1.20966 0.96109 0.99910 0.92326 0.75514 0.87483 1.21632 1.22783 0.84342 0.82518 0.85683 0.85820 0.73941 0.92565 0.92938 0.89265 0.88693 0.90785 0.85715 0.86069 0.91559 0.84653 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.29 12.83 -148.98 -1.91 -1.62 16 2 C -0.06 0.06 2.80 71.23 0.20 0.26 16 3 Si 0.77 -1.33 29.80 68.60 2.04 0.71 16 4 C -0.16 0.05 5.35 -19.85 -0.11 -0.05 16 5 C -0.06 0.05 9.68 22.26 0.22 0.27 16 6 C -0.21 0.36 9.04 22.37 0.20 0.56 16 7 C 0.12 0.34 6.69 22.51 0.15 0.49 16 8 O -0.32 -1.77 9.67 -73.36 -0.71 -2.48 16 9 C 0.04 -0.13 5.22 71.24 0.37 0.24 16 10 C 0.51 1.30 7.91 87.66 0.69 1.99 16 11 O -0.58 -8.57 16.50 16.00 0.26 -8.31 16 12 N -0.71 3.70 5.56 -463.07 -2.57 1.13 16 13 C 0.12 -0.36 5.67 86.38 0.49 0.13 16 14 C -0.11 0.98 5.17 30.59 0.16 1.14 16 15 C -0.11 0.57 3.63 -10.27 -0.04 0.54 16 16 H 0.08 -0.11 8.13 -2.38 -0.02 -0.13 16 17 C -0.15 0.92 7.54 31.12 0.23 1.15 16 18 C 0.04 -0.10 5.69 31.12 0.18 0.07 16 19 H 0.11 -0.68 8.14 -2.39 -0.02 -0.70 16 20 F -0.22 -1.33 17.38 44.97 0.78 -0.55 16 21 C -0.16 0.73 7.53 31.12 0.23 0.96 16 22 C -0.16 -0.44 9.99 22.37 0.22 -0.22 16 23 C -0.08 0.02 8.66 22.25 0.19 0.22 16 24 H 0.39 -3.26 8.70 -74.06 -0.64 -3.91 16 25 H 0.11 -0.02 7.96 -2.39 -0.02 -0.04 16 26 H -0.29 -1.03 7.11 99.48 0.71 -0.32 16 27 H -0.30 -1.73 7.11 99.48 0.71 -1.03 16 28 H 0.14 -0.43 8.06 -2.91 -0.02 -0.45 16 29 H 0.16 -1.29 6.30 -2.91 -0.02 -1.31 16 30 H 0.13 -1.22 7.65 -2.39 -0.02 -1.24 16 31 H 0.12 -1.19 7.67 -2.39 -0.02 -1.21 16 32 H 0.42 -5.72 8.47 -92.71 -0.79 -6.50 16 33 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 36 H 0.09 -1.20 7.84 -2.39 -0.02 -1.22 16 37 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 38 H 0.12 -1.38 8.10 -2.38 -0.02 -1.40 16 39 H 0.12 -1.09 7.90 -2.38 -0.02 -1.11 16 40 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 41 H 0.14 0.31 8.06 -2.91 -0.02 0.28 16 42 H 0.15 -0.68 4.90 -2.91 -0.01 -0.69 16 Total: 0.00 -26.70 355.08 0.95 -25.75 By element: Atomic # 1 Polarization: -22.05 SS G_CDS: -0.34 Total: -22.39 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 3.40 Total: 7.75 kcal Atomic # 7 Polarization: 3.70 SS G_CDS: -2.57 Total: 1.13 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -2.36 Total: -12.40 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.78 Total: -0.55 kcal Atomic # 14 Polarization: -1.33 SS G_CDS: 2.04 Total: 0.71 kcal Total: -26.70 0.95 -25.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_2989410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.766 kcal (2) G-P(sol) polarization free energy of solvation -26.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds