Wall clock time and date at job start Tue Mar 9 2021 12:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47030 * 2 1 4 4 C 1.50696 * 109.47278 * 239.99675 * 2 1 3 5 5 C 1.38268 * 119.94238 * 119.72540 * 4 2 1 6 6 C 1.38148 * 120.05255 * 179.72402 * 5 4 2 7 7 C 1.38731 * 119.94303 * 0.55323 * 6 5 4 8 8 O 1.35900 * 120.05280 * 179.74897 * 7 6 5 9 9 C 1.42897 * 117.00207 * 359.97334 * 8 7 6 10 10 C 1.53005 * 109.47223 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47105 * 179.97438 * 10 9 8 12 12 O 1.21278 * 119.99985 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99787 * 179.97438 * 11 10 9 14 14 C 1.46491 * 119.99579 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46897 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47203 * 180.02562 * 15 14 13 17 17 H 1.09001 * 112.85154 * 316.20118 * 16 15 14 18 18 C 1.53778 * 113.61462 * 87.50153 * 16 15 14 19 19 C 1.53780 * 87.08030 * 139.98000 * 18 16 15 20 20 H 1.09004 * 113.61919 * 220.01700 * 19 18 16 21 21 F 1.39911 * 113.61237 * 89.11844 * 19 18 16 22 22 C 1.53776 * 87.08427 * 334.57178 * 19 18 16 23 23 C 1.38728 * 119.89302 * 359.72113 * 7 6 5 24 24 C 1.38154 * 119.93919 * 0.02562 * 23 7 6 25 25 H 0.96700 * 114.00022 * 300.00827 * 1 2 3 26 26 H 1.08997 * 109.46978 * 119.99554 * 2 1 3 27 27 H 1.48506 * 110.00048 * 178.68200 * 3 2 1 28 28 H 1.48502 * 109.99996 * 299.99525 * 3 2 1 29 29 H 1.07998 * 119.97204 * 359.97438 * 5 4 2 30 30 H 1.08003 * 120.02568 * 180.27470 * 6 5 4 31 31 H 1.08998 * 109.47221 * 300.00355 * 9 8 7 32 32 H 1.09003 * 109.47106 * 60.00320 * 9 8 7 33 33 H 1.08998 * 109.47207 * 300.00236 * 10 9 8 34 34 H 1.09003 * 109.46922 * 60.00080 * 10 9 8 35 35 H 0.96996 * 119.99855 * 0.02562 * 13 11 10 36 36 H 1.08998 * 109.47462 * 300.00303 * 14 13 11 37 37 H 1.09003 * 109.47191 * 60.00468 * 14 13 11 38 38 H 1.08998 * 109.47207 * 300.00331 * 15 14 13 39 39 H 1.09003 * 109.46922 * 60.00175 * 15 14 13 40 40 H 1.08998 * 113.61670 * 254.53267 * 18 16 15 41 41 H 1.09005 * 113.61338 * 25.43457 * 18 16 15 42 42 H 1.09003 * 113.61240 * 270.88342 * 22 19 18 43 43 H 1.09000 * 113.69619 * 139.99111 * 22 19 18 44 44 H 1.07991 * 120.03247 * 180.02562 * 23 7 6 45 45 H 1.07997 * 119.96817 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7216 -0.0357 -2.1426 6 6 3.1880 -0.6864 -3.2684 7 6 2.8536 -2.0146 -3.4891 8 8 3.3070 -2.6554 -4.5984 9 6 4.1235 -1.9003 -5.4957 10 6 4.5346 -2.7824 -6.6763 11 6 5.3951 -1.9858 -7.6229 12 8 5.6544 -0.8268 -7.3772 13 7 5.8773 -2.5617 -8.7420 14 6 6.7143 -1.7874 -9.6618 15 6 7.1253 -2.6695 -10.8425 16 6 7.9999 -1.8611 -11.8029 17 1 7.6144 -0.8578 -11.9838 18 6 9.4961 -1.8935 -11.4489 19 6 9.7703 -2.0029 -12.9582 20 1 10.5764 -2.6932 -13.2067 21 9 9.8983 -0.7641 -13.5957 22 6 8.3681 -2.6206 -13.0884 23 6 2.0559 -2.6877 -2.5752 24 6 1.5963 -2.0340 -1.4482 25 1 -0.3933 0.4418 0.7650 26 1 1.7923 -0.5138 0.8900 27 1 3.5346 1.7703 0.0321 28 1 1.5616 2.4679 -1.2086 29 1 2.9776 0.9996 -1.9728 30 1 3.8089 -0.1603 -3.9785 31 1 3.5616 -1.0413 -5.8627 32 1 5.0149 -1.5546 -4.9723 33 1 5.0963 -3.6415 -6.3097 34 1 3.6429 -3.1277 -7.1996 35 1 5.6702 -3.4887 -8.9383 36 1 6.1524 -0.9285 -10.0287 37 1 7.6058 -1.4418 -9.1384 38 1 7.6870 -3.5287 -10.4759 39 1 6.2336 -3.0148 -11.3658 40 1 9.8599 -0.9669 -11.0051 41 1 9.7925 -2.7786 -10.8860 42 1 8.3561 -3.7045 -12.9737 43 1 7.8202 -2.2820 -13.9677 44 1 1.7945 -3.7218 -2.7445 45 1 0.9750 -2.5575 -0.7367 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_4549602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:38 Heat of formation + Delta-G solvation = -111.109404 kcal Electronic energy + Delta-G solvation = -25695.145516 eV Core-core repulsion = 21594.461233 eV Total energy + Delta-G solvation = -4100.684283 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.69947 -41.50795 -40.86719 -39.45121 -39.13656 -37.26152 -36.20566 -33.64444 -32.33649 -31.90966 -31.28100 -27.08817 -26.79669 -26.11979 -25.10205 -23.61559 -22.82134 -22.17377 -21.50053 -20.45388 -19.65777 -18.37635 -18.02394 -17.62806 -17.43058 -17.27805 -16.96839 -16.77491 -16.69907 -16.50829 -16.00127 -15.84483 -15.56611 -15.54327 -14.87242 -14.79192 -14.70363 -14.42835 -14.09777 -13.96542 -13.83035 -13.69219 -13.50620 -13.15357 -13.02363 -12.87963 -12.55890 -12.50859 -12.05603 -12.00432 -11.97886 -11.83812 -11.81863 -11.30902 -11.20283 -10.93703 -10.32156 -10.22997 -10.19555 -9.33015 -4.98864 0.10033 0.15689 1.29007 1.45183 1.59748 1.61747 1.94952 2.41389 2.49369 3.25729 3.32421 3.36244 3.48926 3.57997 3.58228 3.67418 3.70980 3.79787 3.84904 3.87512 3.93214 4.08078 4.10982 4.20529 4.23372 4.33671 4.41145 4.42930 4.55323 4.56306 4.60475 4.68545 4.70523 4.72194 4.79859 4.79947 4.90464 4.99700 5.04192 5.09408 5.11054 5.15856 5.33355 5.34845 5.46715 5.57334 6.17436 6.40355 6.92213 7.09883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.069 4.069 3 Si 0.770 3.230 4 C -0.130 4.130 5 C -0.103 4.103 6 C -0.212 4.212 7 C 0.124 3.876 8 O -0.315 6.315 9 C 0.071 3.929 10 C -0.130 4.130 11 C 0.516 3.484 12 O -0.590 6.590 13 N -0.714 5.714 14 C 0.118 3.882 15 C -0.107 4.107 16 C -0.111 4.111 17 H 0.080 0.920 18 C -0.157 4.157 19 C 0.043 3.957 20 H 0.113 0.887 21 F -0.222 7.222 22 C -0.148 4.148 23 C -0.151 4.151 24 C -0.054 4.054 25 H 0.404 0.596 26 H 0.099 0.901 27 H -0.292 1.292 28 H -0.303 1.303 29 H 0.115 0.885 30 H 0.134 0.866 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.421 0.579 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.073 0.927 44 H 0.154 0.846 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.591 -6.634 1.784 6.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.179 4.179 3 Si 0.677 3.323 4 C -0.130 4.130 5 C -0.121 4.121 6 C -0.231 4.231 7 C 0.078 3.922 8 O -0.229 6.229 9 C -0.005 4.005 10 C -0.169 4.169 11 C 0.303 3.697 12 O -0.471 6.471 13 N -0.366 5.366 14 C -0.006 4.006 15 C -0.144 4.144 16 C -0.130 4.130 17 H 0.098 0.902 18 C -0.195 4.195 19 C 0.007 3.993 20 H 0.131 0.869 21 F -0.203 7.203 22 C -0.185 4.185 23 C -0.169 4.169 24 C -0.071 4.071 25 H 0.255 0.745 26 H 0.116 0.884 27 H -0.220 1.220 28 H -0.232 1.232 29 H 0.133 0.867 30 H 0.152 0.848 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.259 0.741 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.092 0.908 44 H 0.172 0.828 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.141 -5.708 0.891 5.779 hybrid contribution 0.346 0.107 -0.686 0.775 sum 0.487 -5.601 0.205 5.626 Atomic orbital electron populations 1.86437 1.17120 1.82316 1.51456 1.24657 0.85879 1.10206 0.97164 0.94610 0.77129 0.75950 0.84576 1.19658 1.00601 0.95513 0.97220 1.20801 0.98313 0.98668 0.94317 1.21316 1.06125 0.95041 1.00573 1.19142 0.94692 0.90933 0.87419 1.85957 1.65196 1.40369 1.31339 1.22465 0.93942 0.94296 0.89768 1.21429 1.02090 0.99422 0.93980 1.20699 0.79849 0.86907 0.82262 1.90746 1.60902 1.19589 1.75830 1.45851 1.51801 1.16816 1.22153 1.21365 0.93930 0.94855 0.90439 1.21688 1.00820 0.98050 0.93873 1.22481 0.94897 0.99723 0.95861 0.90162 1.23730 0.96317 1.04433 0.95010 1.22748 1.00854 0.81622 0.94069 0.86889 1.92778 1.97248 1.46564 1.83721 1.23614 0.94372 1.02369 0.98190 1.20799 1.00126 1.01941 0.94052 1.21084 0.96474 0.93206 0.96382 0.74510 0.88358 1.21972 1.23164 0.86746 0.84812 0.92161 0.91890 0.85039 0.85240 0.74124 0.93076 0.92564 0.88810 0.89496 0.91518 0.86093 0.85772 0.90782 0.82826 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.27 12.74 -148.98 -1.90 -2.17 16 2 C -0.07 -0.05 2.81 71.23 0.20 0.15 16 3 Si 0.77 0.24 29.78 68.60 2.04 2.29 16 4 C -0.13 -0.88 5.42 -19.85 -0.11 -0.99 16 5 C -0.10 -0.95 8.66 22.26 0.19 -0.76 16 6 C -0.21 -1.89 9.04 22.37 0.20 -1.69 16 7 C 0.12 0.95 6.69 22.50 0.15 1.10 16 8 O -0.31 -1.71 10.14 -92.43 -0.94 -2.65 16 9 C 0.07 0.23 4.03 71.98 0.29 0.52 16 10 C -0.13 0.44 6.07 29.85 0.18 0.62 16 11 C 0.52 0.97 7.83 87.66 0.69 1.65 16 12 O -0.59 -7.18 15.98 -3.02 -0.05 -7.23 16 13 N -0.71 3.02 5.56 -463.07 -2.57 0.45 16 14 C 0.12 -0.27 5.66 86.38 0.49 0.22 16 15 C -0.11 0.86 5.17 30.60 0.16 1.02 16 16 C -0.11 0.49 3.63 -10.27 -0.04 0.45 16 17 H 0.08 -0.05 8.13 -2.39 -0.02 -0.07 16 18 C -0.16 0.63 7.53 31.12 0.23 0.87 16 19 C 0.04 -0.08 5.69 31.12 0.18 0.09 16 20 H 0.11 -0.63 8.14 -2.38 -0.02 -0.65 16 21 F -0.22 -1.43 17.38 44.97 0.78 -0.65 16 22 C -0.15 0.81 7.54 31.12 0.23 1.04 16 23 C -0.15 -0.78 9.99 22.37 0.22 -0.56 16 24 C -0.05 -0.26 9.60 22.26 0.21 -0.05 16 25 H 0.40 -4.14 8.74 -74.06 -0.65 -4.79 16 26 H 0.10 -0.39 7.96 -2.39 -0.02 -0.41 16 27 H -0.29 -1.78 7.11 99.48 0.71 -1.07 16 28 H -0.30 -2.66 7.11 99.48 0.71 -1.96 16 29 H 0.12 1.02 4.87 -2.91 -0.01 1.00 16 30 H 0.13 1.02 6.30 -2.91 -0.02 1.00 16 31 H 0.06 0.34 7.62 -2.39 -0.02 0.32 16 32 H 0.06 0.32 7.62 -2.39 -0.02 0.30 16 33 H 0.13 -1.03 8.14 -2.39 -0.02 -1.05 16 34 H 0.13 -0.96 8.14 -2.39 -0.02 -0.98 16 35 H 0.42 -4.82 8.47 -92.71 -0.79 -5.61 16 36 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.09 -1.06 7.84 -2.39 -0.02 -1.08 16 39 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 40 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.12 -1.01 7.90 -2.38 -0.02 -1.03 16 42 H 0.12 -1.26 8.10 -2.39 -0.02 -1.28 16 43 H 0.07 -0.26 8.14 -2.39 -0.02 -0.27 16 44 H 0.15 0.13 8.06 -2.92 -0.02 0.10 16 45 H 0.15 0.09 8.06 -2.91 -0.02 0.06 16 Total: 0.00 -25.03 375.96 0.47 -24.55 By element: Atomic # 1 Polarization: -17.92 SS G_CDS: -0.39 Total: -18.30 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 3.49 Total: 3.70 kcal Atomic # 7 Polarization: 3.02 SS G_CDS: -2.57 Total: 0.45 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -2.88 Total: -12.04 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.78 Total: -0.65 kcal Atomic # 14 Polarization: 0.24 SS G_CDS: 2.04 Total: 2.29 kcal Total: -25.03 0.47 -24.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_4549602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.556 kcal (2) G-P(sol) polarization free energy of solvation -25.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds