Wall clock time and date at job start Tue Mar 9 2021 12:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86300 * 109.47241 * 2 1 4 4 C 1.50700 * 109.47341 * 240.00126 * 2 1 3 5 5 C 1.38264 * 119.94555 * 119.72100 * 4 2 1 6 6 C 1.38138 * 120.05431 * 179.72623 * 5 4 2 7 7 C 1.38740 * 119.94513 * 0.57743 * 6 5 4 8 8 O 1.35899 * 120.05536 * 179.68548 * 7 6 5 9 9 C 1.42900 * 117.00511 * 0.02562 * 8 7 6 10 10 C 1.50692 * 109.47397 * 180.02562 * 9 8 7 11 11 C 1.36411 * 125.80366 * 89.72088 * 10 9 8 12 12 C 1.47379 * 127.19271 * 359.97438 * 11 10 9 13 13 O 1.21615 * 119.99634 * 0.02562 * 12 11 10 14 14 N 1.34771 * 119.99998 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99925 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47522 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47337 * 180.02562 * 16 15 14 18 18 H 1.09001 * 112.84814 * 316.19131 * 17 16 15 19 19 C 1.53774 * 113.61676 * 87.50148 * 17 16 15 20 20 C 1.53777 * 87.08149 * 139.97992 * 19 17 16 21 21 H 1.09003 * 113.61374 * 220.02078 * 20 19 17 22 22 F 1.39895 * 113.61576 * 89.11443 * 20 19 17 23 23 C 1.53777 * 87.08089 * 334.56415 * 20 19 17 24 24 C 1.47020 * 105.61591 * 179.86792 * 11 10 9 25 25 C 1.34176 * 105.95685 * 0.38860 * 24 11 10 26 26 O 1.33653 * 125.80019 * 270.02326 * 10 9 8 27 27 C 1.38726 * 119.88742 * 359.69711 * 7 6 5 28 28 C 1.38153 * 119.94564 * 0.02562 * 27 7 6 29 29 H 0.96693 * 114.00306 * 59.99646 * 1 2 3 30 30 H 1.09000 * 109.47349 * 120.00016 * 2 1 3 31 31 H 1.48506 * 110.00048 * 298.68597 * 3 2 1 32 32 H 1.48502 * 109.99996 * 59.99922 * 3 2 1 33 33 H 1.08002 * 119.97450 * 359.97438 * 5 4 2 34 34 H 1.08003 * 120.02825 * 180.25290 * 6 5 4 35 35 H 1.09007 * 109.47130 * 300.00980 * 9 8 7 36 36 H 1.09003 * 109.46727 * 59.99954 * 9 8 7 37 37 H 0.96993 * 120.00543 * 359.97438 * 14 12 11 38 38 H 1.08999 * 109.47173 * 299.99956 * 15 14 12 39 39 H 1.09001 * 109.47485 * 59.99902 * 15 14 12 40 40 H 1.09004 * 109.46483 * 299.99710 * 16 15 14 41 41 H 1.09001 * 109.46910 * 59.99440 * 16 15 14 42 42 H 1.08998 * 113.61163 * 254.53226 * 19 17 16 43 43 H 1.09006 * 113.61535 * 25.42809 * 19 17 16 44 44 H 1.08996 * 113.61784 * 270.88478 * 23 20 19 45 45 H 1.09004 * 113.68797 * 139.98781 * 23 20 19 46 46 H 1.08005 * 127.02625 * 180.17994 * 24 11 10 47 47 H 1.08001 * 125.44445 * 179.72277 * 25 24 11 48 48 H 1.07999 * 120.03394 * 179.97438 * 27 7 6 49 49 H 1.07995 * 119.97802 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7214 -0.0356 -2.1427 6 6 3.1878 -0.6862 -3.2685 7 6 2.8530 -2.0143 -3.4895 8 8 3.3053 -2.6547 -4.5996 9 6 4.1220 -1.8996 -5.4967 10 6 4.5256 -2.7679 -6.6603 11 6 3.8333 -2.9113 -7.8269 12 6 2.5633 -2.2602 -8.1950 13 8 2.0220 -1.4992 -7.4160 14 7 2.0020 -2.5082 -9.3949 15 6 0.7399 -1.8606 -9.7610 16 6 0.3238 -2.3102 -11.1631 17 6 -0.9939 -1.6333 -11.5457 18 1 -1.7233 -1.6387 -10.7356 19 6 -0.8105 -0.2553 -12.2029 20 6 -1.9490 -0.6474 -13.1594 21 1 -1.7813 -0.3335 -14.1897 22 9 -3.2207 -0.3065 -12.6865 23 6 -1.5642 -2.1119 -12.8913 24 6 4.6200 -3.8490 -8.6413 25 6 5.6857 -4.1802 -7.8964 26 8 5.6198 -3.5328 -6.7225 27 6 2.0554 -2.6875 -2.5756 28 6 1.5962 -2.0340 -1.4483 29 1 -0.3933 0.4417 -0.7649 30 1 1.7923 -0.5138 0.8900 31 1 1.5878 2.4586 -1.2242 32 1 1.5615 2.4679 1.2085 33 1 2.9775 0.9998 -1.9730 34 1 3.8083 -0.1599 -3.9788 35 1 3.5608 -1.0398 -5.8627 36 1 5.0140 -1.5551 -4.9734 37 1 2.4338 -3.1148 -10.0164 38 1 -0.0332 -2.1409 -9.0456 39 1 0.8701 -0.7784 -9.7499 40 1 1.0968 -2.0302 -11.8787 41 1 0.1934 -3.3923 -11.1738 42 1 -1.0595 0.5782 -11.5462 43 1 0.1528 -0.1323 -12.6979 44 1 -0.8070 -2.4965 -13.5744 45 1 -2.4208 -2.7783 -12.7901 46 1 4.3860 -4.2021 -9.6348 47 1 6.4708 -4.8596 -8.1937 48 1 1.7930 -3.7212 -2.7455 49 1 0.9749 -2.5574 -0.7367 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_4549634.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:54 Heat of formation + Delta-G solvation = -83.219878 kcal Electronic energy + Delta-G solvation = -33033.246104 eV Core-core repulsion = 28230.410589 eV Total energy + Delta-G solvation = -4802.835515 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.68784 -43.72250 -41.32093 -40.66116 -39.39000 -39.25741 -37.33190 -36.19454 -34.19553 -32.90505 -32.00077 -31.73206 -31.41149 -28.03994 -26.87553 -26.40988 -26.03888 -24.28382 -23.79848 -22.93867 -22.42223 -22.05312 -21.02120 -20.42778 -19.53011 -19.20193 -18.38866 -17.54733 -17.30525 -17.24105 -17.10870 -16.92479 -16.74966 -16.69820 -16.48140 -16.30425 -16.15188 -15.93009 -15.72041 -15.44039 -15.32756 -14.75157 -14.64326 -14.54254 -14.41067 -14.21025 -13.92448 -13.76473 -13.58921 -13.52436 -13.49138 -13.14188 -13.09505 -12.56402 -12.32858 -12.14356 -12.12996 -11.98232 -11.82776 -11.66389 -11.31920 -11.19553 -10.98307 -10.95732 -10.61587 -10.23134 -10.07393 -9.83485 -9.26737 -4.93454 -0.05347 0.24371 0.27280 1.03167 1.31604 1.50837 1.59997 1.94948 2.03830 2.11658 2.45694 2.61704 3.27143 3.33621 3.33803 3.41443 3.58105 3.59368 3.66974 3.68190 3.73081 3.77383 3.85848 3.89007 3.93043 4.08255 4.10863 4.22865 4.27156 4.39983 4.41993 4.45446 4.54122 4.56475 4.59328 4.67006 4.72154 4.74603 4.80176 4.81261 4.91560 4.93392 5.01071 5.10282 5.12168 5.16542 5.23022 5.25823 5.33979 5.44723 5.48026 5.66612 5.88093 6.23639 6.42146 6.47174 7.08221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.078 4.078 3 Si 0.767 3.233 4 C -0.158 4.158 5 C -0.076 4.076 6 C -0.205 4.205 7 C 0.124 3.876 8 O -0.323 6.323 9 C 0.134 3.866 10 C 0.040 3.960 11 C -0.225 4.225 12 C 0.580 3.420 13 O -0.576 6.576 14 N -0.707 5.707 15 C 0.121 3.879 16 C -0.106 4.106 17 C -0.110 4.110 18 H 0.080 0.920 19 C -0.157 4.157 20 C 0.044 3.956 21 H 0.114 0.886 22 F -0.222 7.222 23 C -0.148 4.148 24 C -0.196 4.196 25 C -0.011 4.011 26 O -0.177 6.177 27 C -0.163 4.163 28 C -0.058 4.058 29 H 0.385 0.615 30 H 0.127 0.873 31 H -0.285 1.285 32 H -0.302 1.302 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.417 0.583 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.073 0.927 46 H 0.194 0.806 47 H 0.253 0.747 48 H 0.133 0.867 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.475 -2.767 -7.195 10.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.187 4.187 3 Si 0.672 3.328 4 C -0.159 4.159 5 C -0.093 4.093 6 C -0.224 4.224 7 C 0.079 3.921 8 O -0.237 6.237 9 C 0.060 3.940 10 C -0.013 4.013 11 C -0.229 4.229 12 C 0.368 3.632 13 O -0.457 6.457 14 N -0.359 5.359 15 C -0.003 4.003 16 C -0.144 4.144 17 C -0.129 4.129 18 H 0.098 0.902 19 C -0.194 4.194 20 C 0.008 3.992 21 H 0.132 0.868 22 F -0.203 7.203 23 C -0.186 4.186 24 C -0.215 4.215 25 C -0.077 4.077 26 O -0.072 6.072 27 C -0.182 4.182 28 C -0.076 4.076 29 H 0.234 0.766 30 H 0.144 0.856 31 H -0.212 1.212 32 H -0.230 1.230 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.254 0.746 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.092 0.908 46 H 0.211 0.789 47 H 0.269 0.731 48 H 0.151 0.849 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.105 -1.936 -5.964 9.476 hybrid contribution -1.418 -0.250 -0.804 1.649 sum 5.687 -2.185 -6.768 9.106 Atomic orbital electron populations 1.86555 1.18725 1.80352 1.50123 1.25184 0.83258 1.11717 0.98497 0.94157 0.90304 0.72044 0.76261 1.20290 1.01923 0.95323 0.98319 1.21019 0.95631 1.00016 0.92655 1.21416 1.06098 0.93718 1.01158 1.19190 0.94655 0.91920 0.86323 1.86046 1.65315 1.40674 1.31703 1.21145 0.95451 0.91220 0.86160 1.22043 0.87123 0.96003 0.96142 1.21386 0.98332 1.05888 0.97343 1.17497 0.83456 0.80377 0.81866 1.90781 1.64621 1.38619 1.51692 1.45660 1.24892 1.48327 1.16983 1.21390 0.84417 0.97387 0.97087 1.21691 0.96840 1.01614 0.94257 1.22470 0.97339 0.95897 0.97197 0.90192 1.23726 0.99545 0.97732 0.98404 1.22738 0.78423 0.98488 0.99586 0.86847 1.92774 1.43310 1.93513 1.90721 1.23617 1.02355 0.94995 0.97584 1.23263 0.95222 1.00197 1.02817 1.24938 1.02116 0.98477 0.82159 1.83795 1.38855 1.46754 1.37807 1.20630 1.01197 1.01443 0.94912 1.20946 0.96950 0.93896 0.95766 0.76601 0.85556 1.21224 1.23026 0.83293 0.83434 0.87715 0.87868 0.74572 0.93118 0.92179 0.88702 0.89623 0.91466 0.86037 0.85735 0.90823 0.78909 0.73095 0.84938 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.65 12.77 -148.98 -1.90 -4.55 16 2 C -0.08 -0.11 2.82 71.24 0.20 0.09 16 3 Si 0.77 -0.26 29.78 68.60 2.04 1.79 16 4 C -0.16 -0.49 5.39 -19.85 -0.11 -0.60 16 5 C -0.08 -0.16 8.66 22.25 0.19 0.04 16 6 C -0.21 -0.84 9.04 22.37 0.20 -0.64 16 7 C 0.12 0.99 6.69 22.51 0.15 1.14 16 8 O -0.32 -3.15 10.12 -92.42 -0.94 -4.09 16 9 C 0.13 0.69 4.73 71.23 0.34 1.03 16 10 C 0.04 0.21 7.00 25.26 0.18 0.38 16 11 C -0.22 -0.82 6.31 -18.99 -0.12 -0.94 16 12 C 0.58 3.79 7.81 86.65 0.68 4.47 16 13 O -0.58 -8.25 14.85 -4.08 -0.06 -8.31 16 14 N -0.71 0.69 5.55 -466.41 -2.59 -1.90 16 15 C 0.12 -0.10 5.67 86.38 0.49 0.39 16 16 C -0.11 0.78 5.17 30.60 0.16 0.94 16 17 C -0.11 0.45 3.63 -10.27 -0.04 0.41 16 18 H 0.08 -0.02 8.13 -2.39 -0.02 -0.04 16 19 C -0.16 0.63 7.53 31.12 0.23 0.86 16 20 C 0.04 -0.08 5.69 31.12 0.18 0.09 16 21 H 0.11 -0.65 8.14 -2.39 -0.02 -0.67 16 22 F -0.22 -1.44 17.38 44.97 0.78 -0.65 16 23 C -0.15 0.79 7.54 31.12 0.23 1.02 16 24 C -0.20 0.85 10.60 23.65 0.25 1.10 16 25 C -0.01 0.06 12.03 66.89 0.80 0.86 16 26 O -0.18 -0.39 10.52 4.44 0.05 -0.35 16 27 C -0.16 -1.16 9.99 22.37 0.22 -0.94 16 28 C -0.06 -0.28 9.60 22.26 0.21 -0.07 16 29 H 0.38 -0.05 8.70 -74.06 -0.64 -0.69 16 30 H 0.13 -0.07 7.96 -2.39 -0.02 -0.09 16 31 H -0.29 -1.10 7.11 99.48 0.71 -0.39 16 32 H -0.30 -2.16 7.11 99.48 0.71 -1.46 16 33 H 0.15 -0.40 4.87 -2.91 -0.01 -0.42 16 34 H 0.15 0.00 6.30 -2.91 -0.02 -0.02 16 35 H 0.11 0.69 6.02 -2.38 -0.01 0.68 16 36 H 0.10 -0.01 7.66 -2.39 -0.02 -0.02 16 37 H 0.42 -3.26 7.64 -92.71 -0.71 -3.97 16 38 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.09 -1.03 7.84 -2.39 -0.02 -1.05 16 41 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 42 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 43 H 0.12 -1.02 7.90 -2.38 -0.02 -1.04 16 44 H 0.12 -1.26 8.10 -2.39 -0.02 -1.28 16 45 H 0.07 -0.24 8.14 -2.38 -0.02 -0.26 16 46 H 0.19 -2.31 7.74 -2.91 -0.02 -2.33 16 47 H 0.25 -3.59 8.06 -2.91 -0.02 -3.61 16 48 H 0.13 0.79 8.06 -2.91 -0.02 0.76 16 49 H 0.14 0.40 8.06 -2.91 -0.02 0.37 16 Total: 0.00 -26.08 412.97 1.53 -24.55 By element: Atomic # 1 Polarization: -15.83 SS G_CDS: -0.31 Total: -16.14 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 4.46 Total: 9.64 kcal Atomic # 7 Polarization: 0.69 SS G_CDS: -2.59 Total: -1.90 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -2.85 Total: -17.28 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.78 Total: -0.65 kcal Atomic # 14 Polarization: -0.26 SS G_CDS: 2.04 Total: 1.79 kcal Total: -26.08 1.53 -24.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_4549634.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.672 kcal (2) G-P(sol) polarization free energy of solvation -26.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds