Wall clock time and date at job start Tue Mar 9 2021 12:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35964 * 116.99979 * 2 1 4 4 C 1.39448 * 120.12044 * 179.97438 * 3 2 1 5 5 O 1.34767 * 133.24413 * 359.95633 * 4 3 2 6 6 C 1.34926 * 110.84404 * 180.02562 * 5 4 3 7 7 C 1.46997 * 125.14244 * 180.02562 * 6 5 4 8 8 O 1.21654 * 120.00180 * 179.97438 * 7 6 5 9 9 N 1.34776 * 119.99841 * 359.97199 * 7 6 5 10 10 C 1.46496 * 120.00356 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47459 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46746 * 179.97438 * 11 10 9 13 13 H 1.08995 * 112.85150 * 43.81033 * 12 11 10 14 14 C 1.53780 * 113.60874 * 175.00083 * 12 11 10 15 15 C 1.53784 * 87.07985 * 139.98488 * 14 12 11 16 16 H 1.09005 * 113.61495 * 220.02102 * 15 14 12 17 17 F 1.39893 * 113.61446 * 89.20036 * 15 14 12 18 18 C 1.53775 * 113.61773 * 272.49645 * 12 11 10 19 19 C 1.35807 * 109.72152 * 359.97438 * 6 5 4 20 20 C 1.40612 * 119.13636 * 179.97438 * 4 3 2 21 21 C 1.39786 * 120.11649 * 359.97438 * 20 4 3 22 22 C 1.50697 * 120.08964 * 179.97438 * 21 20 4 23 23 O 1.42897 * 109.47485 * 285.00699 * 22 21 20 24 24 Si 1.86302 * 109.47079 * 165.00249 * 22 21 20 25 25 C 1.36625 * 119.81274 * 0.02562 * 21 20 4 26 26 C 1.38260 * 120.12034 * 359.72291 * 3 2 1 27 27 H 1.09001 * 109.46558 * 60.00250 * 1 2 3 28 28 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47187 * 300.00202 * 1 2 3 30 30 H 0.97007 * 119.99948 * 0.02562 * 9 7 6 31 31 H 1.09004 * 109.46894 * 300.00835 * 10 9 7 32 32 H 1.09006 * 109.46951 * 60.00125 * 10 9 7 33 33 H 1.08993 * 109.47260 * 300.00590 * 11 10 9 34 34 H 1.08998 * 109.46572 * 60.00414 * 11 10 9 35 35 H 1.09002 * 113.61644 * 254.53102 * 14 12 11 36 36 H 1.09000 * 113.61490 * 25.35281 * 14 12 11 37 37 H 1.09005 * 113.61798 * 334.57775 * 18 12 11 38 38 H 1.09002 * 113.61400 * 105.47154 * 18 12 11 39 39 H 1.07998 * 126.96313 * 180.02562 * 19 6 5 40 40 H 1.09006 * 109.47117 * 45.00704 * 22 21 20 41 41 H 0.96702 * 114.00403 * 180.02562 * 23 22 21 42 42 H 1.48506 * 109.99767 * 60.00200 * 24 22 21 43 43 H 1.48492 * 110.00346 * 181.31814 * 24 22 21 44 44 H 1.08005 * 119.74908 * 180.02562 * 25 21 20 45 45 H 1.08008 * 119.65890 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4387 1.2874 0.0005 5 8 4.4141 0.3574 0.0019 6 6 5.6317 0.9387 0.0024 7 6 6.9132 0.2185 0.0033 8 8 7.9596 0.8389 0.0033 9 7 6.9287 -1.1292 0.0042 10 6 8.2057 -1.8470 0.0045 11 6 7.9435 -3.3544 0.0049 12 6 9.2774 -4.1040 0.0046 13 1 10.0017 -3.6793 0.6996 14 6 9.1266 -5.6294 0.1277 15 6 10.2613 -5.7458 -0.9037 16 1 10.1054 -6.5373 -1.6369 17 9 11.5375 -5.7790 -0.3316 18 6 9.8440 -4.3526 -1.4032 19 6 5.4945 2.2898 0.0009 20 6 4.0555 2.5510 0.0000 21 6 3.2765 3.7117 -0.0016 22 6 3.9381 5.0656 -0.0017 23 8 4.4591 5.3413 1.3001 24 14 2.6869 6.3682 -0.4585 25 6 1.9136 3.6151 -0.0022 26 6 1.2957 2.3726 -0.0058 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 6.0943 -1.6239 0.0039 31 1 8.7742 -1.5776 -0.8857 32 1 8.7744 -1.5765 0.8943 33 1 7.3749 -3.6240 0.8948 34 1 7.3752 -3.6244 -0.8851 35 1 9.3901 -6.0162 1.1122 36 1 8.1681 -6.0039 -0.2315 37 1 9.0822 -4.3781 -2.1824 38 1 10.6866 -3.7085 -1.6547 39 1 6.2874 3.0231 0.0005 40 1 4.7513 5.0727 -0.7275 41 1 4.8997 6.1990 1.3739 42 1 1.5729 6.3689 0.5235 43 1 3.3341 7.7042 -0.4931 44 1 1.3128 4.5125 -0.0038 45 1 0.2174 2.3119 -0.0107 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_6672420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:32 Heat of formation + Delta-G solvation = -91.496516 kcal Electronic energy + Delta-G solvation = -29958.339704 eV Core-core repulsion = 25438.909046 eV Total energy + Delta-G solvation = -4519.430658 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.67265 -43.78263 -41.04886 -40.45138 -39.38097 -39.01477 -37.22359 -36.35548 -33.69304 -32.40177 -31.86994 -30.84347 -28.58337 -26.91032 -26.58805 -26.11333 -24.45434 -24.03610 -22.85000 -21.95864 -21.71906 -20.48139 -19.78946 -18.91387 -18.59834 -18.47704 -17.79640 -17.45187 -17.13215 -16.98138 -16.83769 -16.60166 -16.37541 -16.30958 -15.94847 -15.70103 -15.60202 -15.33106 -14.72544 -14.57955 -14.56460 -14.23811 -14.01796 -13.95756 -13.81657 -13.51209 -13.38989 -13.23776 -13.12522 -12.59761 -12.54309 -12.37929 -12.07541 -12.05344 -11.84606 -11.74181 -11.68472 -11.19769 -11.04983 -11.00162 -10.49655 -10.40237 -9.85508 -9.02802 -4.90856 -0.70270 0.07001 0.58346 1.13991 1.28555 1.61466 1.85069 1.87798 1.93470 2.11782 2.34070 3.13169 3.27828 3.33795 3.36351 3.53111 3.59407 3.69458 3.71020 3.79360 3.84682 3.91921 3.96314 4.09024 4.12390 4.20763 4.32466 4.35634 4.41110 4.42243 4.43150 4.56868 4.68626 4.73552 4.76651 4.80726 4.81943 4.83807 4.90538 5.01486 5.02110 5.03984 5.14563 5.16879 5.22381 5.32662 5.49156 5.54995 6.15671 6.26500 6.57394 6.77739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.331 6.331 3 C 0.139 3.861 4 C 0.022 3.978 5 O -0.179 6.179 6 C -0.033 4.033 7 C 0.600 3.400 8 O -0.547 6.547 9 N -0.703 5.703 10 C 0.117 3.883 11 C -0.110 4.110 12 C -0.108 4.108 13 H 0.085 0.915 14 C -0.150 4.150 15 C 0.045 3.955 16 H 0.113 0.887 17 F -0.221 7.221 18 C -0.157 4.157 19 C -0.112 4.112 20 C -0.098 4.098 21 C -0.065 4.065 22 C -0.093 4.093 23 O -0.558 6.558 24 Si 0.779 3.221 25 C -0.090 4.090 26 C -0.166 4.166 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.071 0.929 30 H 0.418 0.582 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.070 0.930 39 H 0.174 0.826 40 H 0.086 0.914 41 H 0.394 0.606 42 H -0.280 1.280 43 H -0.287 1.287 44 H 0.161 0.839 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.373 -1.300 -4.047 9.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.245 6.245 3 C 0.093 3.907 4 C -0.026 4.026 5 O -0.081 6.081 6 C -0.083 4.083 7 C 0.386 3.614 8 O -0.427 6.427 9 N -0.353 5.353 10 C -0.006 4.006 11 C -0.147 4.147 12 C -0.127 4.127 13 H 0.103 0.897 14 C -0.187 4.187 15 C 0.009 3.991 16 H 0.131 0.869 17 F -0.202 7.202 18 C -0.194 4.194 19 C -0.132 4.132 20 C -0.099 4.099 21 C -0.066 4.066 22 C -0.200 4.200 23 O -0.368 6.368 24 Si 0.682 3.318 25 C -0.107 4.107 26 C -0.184 4.184 27 H 0.096 0.904 28 H 0.136 0.864 29 H 0.090 0.910 30 H 0.256 0.744 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.089 0.911 39 H 0.192 0.808 40 H 0.104 0.896 41 H 0.245 0.755 42 H -0.207 1.207 43 H -0.214 1.214 44 H 0.178 0.822 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.192 -1.283 -3.669 9.067 hybrid contribution 0.976 0.371 1.110 1.524 sum -7.215 -0.912 -2.560 7.710 Atomic orbital electron populations 1.23499 0.75298 1.06093 1.03144 1.86142 1.24319 1.25607 1.88424 1.17934 0.86076 0.86826 0.99900 1.19167 0.88257 0.87037 1.08181 1.84000 1.12634 1.34924 1.76517 1.21937 0.84031 0.92734 1.09629 1.16669 0.84937 0.82863 0.76944 1.90893 1.31446 1.68352 1.52002 1.45881 1.11716 1.04902 1.72830 1.21570 0.84160 0.92399 1.02479 1.21712 0.97388 0.91035 1.04576 1.22470 0.97125 0.95530 0.97600 0.89665 1.23621 0.99448 0.95792 0.99855 1.22713 0.78368 1.00813 0.97232 0.86943 1.92775 1.42874 1.97727 1.86827 1.23726 1.02287 0.95373 0.98017 1.22843 0.95202 0.94519 1.00681 1.19596 0.92549 0.92807 1.04993 1.18660 0.93112 0.92247 1.02548 1.25163 1.06190 1.00786 0.87906 1.86570 1.77373 1.42526 1.30299 0.93955 0.76581 0.73711 0.87507 1.20837 0.92972 0.98854 0.98053 1.21353 1.01866 0.89469 1.05723 0.90370 0.86450 0.91020 0.74445 0.91226 0.91834 0.89763 0.88983 0.90747 0.86012 0.86209 0.91116 0.80845 0.89648 0.75512 1.20744 1.21429 0.82200 0.80153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.94 10.50 -93.14 -0.98 -1.92 16 3 C 0.14 0.58 6.70 22.57 0.15 0.73 16 4 C 0.02 0.18 7.35 23.14 0.17 0.35 16 5 O -0.18 -1.56 10.28 -13.30 -0.14 -1.69 16 6 C -0.03 -0.29 7.07 24.00 0.17 -0.12 16 7 C 0.60 5.20 7.80 86.54 0.67 5.88 16 8 O -0.55 -8.19 16.83 -4.20 -0.07 -8.27 16 9 N -0.70 -1.27 5.55 -466.78 -2.59 -3.86 16 10 C 0.12 -0.04 5.66 86.38 0.49 0.45 16 11 C -0.11 0.64 5.17 30.60 0.16 0.80 16 12 C -0.11 0.39 3.63 -10.27 -0.04 0.35 16 13 H 0.09 -0.05 8.13 -2.39 -0.02 -0.07 16 14 C -0.15 0.67 7.54 31.12 0.23 0.91 16 15 C 0.04 -0.07 5.69 31.12 0.18 0.11 16 16 H 0.11 -0.57 8.14 -2.38 -0.02 -0.59 16 17 F -0.22 -1.45 17.39 44.97 0.78 -0.67 16 18 C -0.16 0.57 7.53 31.12 0.23 0.80 16 19 C -0.11 -0.98 10.68 23.79 0.25 -0.72 16 20 C -0.10 -0.78 6.16 -20.24 -0.12 -0.90 16 21 C -0.07 -0.26 5.30 -19.87 -0.11 -0.36 16 22 C -0.09 -0.07 2.70 71.24 0.19 0.13 16 23 O -0.56 -2.12 12.86 -148.98 -1.92 -4.03 16 24 Si 0.78 -2.66 30.20 68.60 2.07 -0.59 16 25 C -0.09 0.01 8.62 22.02 0.19 0.20 16 26 C -0.17 0.20 9.03 22.40 0.20 0.40 16 27 H 0.08 -0.78 7.65 -2.39 -0.02 -0.80 16 28 H 0.12 -1.10 8.14 -2.39 -0.02 -1.11 16 29 H 0.07 -0.64 7.67 -2.39 -0.02 -0.65 16 30 H 0.42 -0.93 8.19 -92.70 -0.76 -1.69 16 31 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 33 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 34 H 0.09 -0.79 7.84 -2.39 -0.02 -0.81 16 35 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.12 -1.06 8.10 -2.39 -0.02 -1.08 16 37 H 0.12 -0.90 7.90 -2.38 -0.02 -0.92 16 38 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 40 H 0.09 -0.14 7.96 -2.38 -0.02 -0.16 16 41 H 0.39 -1.72 8.74 -74.06 -0.65 -2.37 16 42 H -0.28 -0.33 6.75 99.48 0.67 0.34 16 43 H -0.29 -0.34 7.11 99.48 0.71 0.36 16 44 H 0.16 -0.76 4.85 -2.91 -0.01 -0.78 16 45 H 0.18 -1.55 6.26 -2.91 -0.02 -1.56 16 Total: 0.00 -23.33 382.21 0.95 -22.38 By element: Atomic # 1 Polarization: -11.03 SS G_CDS: -0.35 Total: -11.39 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 4.14 Total: 10.03 kcal Atomic # 7 Polarization: -1.27 SS G_CDS: -2.59 Total: -3.86 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -3.10 Total: -15.90 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.78 Total: -0.67 kcal Atomic # 14 Polarization: -2.66 SS G_CDS: 2.07 Total: -0.59 kcal Total: -23.33 0.95 -22.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_6672420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.116 kcal (2) G-P(sol) polarization free energy of solvation -23.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds