Wall clock time and date at job start Tue Mar 9 2021 12:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42910 * 1 3 3 Si 1.86296 * 109.47072 * 2 1 4 4 C 1.50706 * 109.46885 * 120.00127 * 2 1 3 5 5 C 1.34232 * 126.49857 * 255.31421 * 4 2 1 6 6 N 1.36825 * 109.93934 * 180.13684 * 5 4 2 7 7 C 1.46497 * 125.06450 * 179.85181 * 6 5 4 8 8 C 1.50706 * 109.47170 * 264.69338 * 7 6 5 9 9 O 1.21278 * 120.00005 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99841 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99638 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47050 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.47101 * 180.02562 * 12 11 10 14 14 H 1.09004 * 112.84496 * 43.80358 * 13 12 11 15 15 C 1.53778 * 113.61196 * 174.99660 * 13 12 11 16 16 C 1.53787 * 87.08035 * 140.06532 * 15 13 12 17 17 H 1.08994 * 113.61447 * 220.02014 * 16 15 13 18 18 F 1.39898 * 113.61126 * 89.11415 * 16 15 13 19 19 C 1.53778 * 113.68969 * 272.53425 * 13 12 11 20 20 C 1.37693 * 109.87353 * 359.58182 * 6 5 4 21 21 C 1.39085 * 133.51639 * 180.26016 * 20 6 5 22 22 C 1.37788 * 119.77759 * 179.97438 * 21 20 6 23 23 C 1.38788 * 120.66906 * 0.02562 * 22 21 20 24 24 C 1.36656 * 120.52480 * 359.97438 * 23 22 21 25 25 C 1.39590 * 119.76811 * 0.02562 * 24 23 22 26 26 H 0.96696 * 113.99844 * 60.00372 * 1 2 3 27 27 H 1.08997 * 109.46834 * 239.99946 * 2 1 3 28 28 H 1.48499 * 110.00177 * 60.00116 * 3 2 1 29 29 H 1.48503 * 109.99639 * 181.31878 * 3 2 1 30 30 H 1.08007 * 125.02817 * 359.97438 * 5 4 2 31 31 H 1.09005 * 109.47300 * 144.69545 * 7 6 5 32 32 H 1.08999 * 109.47048 * 24.69221 * 7 6 5 33 33 H 0.96998 * 120.00562 * 0.02562 * 10 8 7 34 34 H 1.08995 * 109.46920 * 60.00052 * 11 10 8 35 35 H 1.08999 * 109.47157 * 299.99741 * 11 10 8 36 36 H 1.08994 * 109.47268 * 59.99701 * 12 11 10 37 37 H 1.08999 * 109.46948 * 299.99892 * 12 11 10 38 38 H 1.08998 * 113.61879 * 25.52015 * 15 13 12 39 39 H 1.08997 * 113.69304 * 254.62101 * 15 13 12 40 40 H 1.08993 * 113.61229 * 105.46192 * 19 13 12 41 41 H 1.09000 * 113.61263 * 334.55842 * 19 13 12 42 42 H 1.07996 * 120.10982 * 359.96591 * 21 20 6 43 43 H 1.07998 * 119.66231 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.73570 * 179.97438 * 23 22 21 45 45 H 1.08003 * 120.11549 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 2.4554 -0.1373 2.3254 6 7 2.8021 -1.0989 3.2349 7 6 3.4060 -0.8403 4.5443 8 6 4.9044 -0.9628 4.4396 9 8 5.4173 -1.2394 3.3760 10 7 5.6743 -0.7659 5.5281 11 6 7.1309 -0.8856 5.4264 12 6 7.7615 -0.6153 6.7939 13 6 9.2828 -0.7396 6.6875 14 1 9.6860 -0.2541 5.7987 15 6 10.0233 -0.3668 7.9827 16 6 10.9601 -1.5520 7.6952 17 1 11.2303 -2.1207 8.5849 18 9 12.0661 -1.2140 6.9081 19 6 9.8017 -2.1721 6.8961 20 6 2.4934 -2.3457 2.7386 21 6 2.6280 -3.6362 3.2396 22 6 2.2141 -4.7107 2.4829 23 6 1.6636 -4.5193 1.2233 24 6 1.5221 -3.2601 0.7116 25 6 1.9347 -2.1571 1.4611 26 1 -0.3933 0.4416 -0.7651 27 1 1.7924 -0.5138 -0.8900 28 1 1.5616 2.4679 1.2085 29 1 3.5347 1.7702 -0.0321 30 1 2.5866 0.9254 2.4663 31 1 3.0317 -1.5657 5.2667 32 1 3.1457 0.1662 4.8720 33 1 5.2640 -0.5458 6.3790 34 1 7.5054 -0.1602 4.7042 35 1 7.3907 -1.8921 5.0986 36 1 7.3870 -1.3403 7.5164 37 1 7.5016 0.3914 7.1213 38 1 9.4212 -0.4944 8.8822 39 1 10.5199 0.6026 7.9397 40 1 10.1190 -2.6600 5.9745 41 1 9.1389 -2.7932 7.4985 42 1 3.0557 -3.7954 4.2184 43 1 2.3199 -5.7119 2.8735 44 1 1.3446 -5.3724 0.6429 45 1 1.0932 -3.1188 -0.2695 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14412250_9818708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:46 Heat of formation + Delta-G solvation = -24.825223 kcal Electronic energy + Delta-G solvation = -27766.408061 eV Core-core repulsion = 23666.269342 eV Total energy + Delta-G solvation = -4100.138720 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.72103 -42.65339 -40.81832 -39.43315 -38.13352 -37.62680 -36.25237 -34.32399 -32.28450 -31.29262 -30.38030 -29.05445 -26.90648 -26.33379 -25.29633 -23.84674 -23.01096 -22.69385 -21.74601 -20.64370 -20.48599 -18.68327 -18.33198 -18.26769 -17.83531 -17.30584 -17.00135 -16.84394 -16.57233 -16.47855 -16.06321 -15.82774 -15.55686 -15.52525 -15.07169 -14.90703 -14.83451 -14.65605 -14.51400 -14.20412 -13.87281 -13.64951 -13.59485 -13.37299 -13.14475 -12.78185 -12.66667 -12.60556 -12.49747 -12.08303 -12.03441 -11.87024 -11.83146 -11.39889 -11.23883 -11.02115 -10.65036 -10.31851 -10.19661 -9.27432 -8.75175 -4.99404 0.03254 0.55801 1.28777 1.30936 1.31663 1.48856 1.67648 1.96151 2.09268 2.87537 3.23207 3.29724 3.43942 3.46709 3.55311 3.57335 3.64459 3.69012 3.78223 3.81871 3.95652 4.00004 4.05092 4.16769 4.17256 4.21150 4.34216 4.37065 4.50542 4.52795 4.59961 4.65967 4.68734 4.69829 4.77101 4.82216 4.87442 4.97079 5.05079 5.05880 5.12148 5.24447 5.42978 5.44061 5.57169 5.64060 5.64772 6.02850 6.14050 6.35092 6.98684 7.01226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.046 4.046 3 Si 0.786 3.214 4 C -0.180 4.180 5 C 0.052 3.948 6 N -0.468 5.468 7 C 0.087 3.913 8 C 0.488 3.512 9 O -0.576 6.576 10 N -0.709 5.709 11 C 0.120 3.880 12 C -0.105 4.105 13 C -0.111 4.111 14 H 0.078 0.922 15 C -0.147 4.147 16 C 0.043 3.957 17 H 0.114 0.886 18 F -0.222 7.222 19 C -0.157 4.157 20 C 0.089 3.911 21 C -0.136 4.136 22 C -0.102 4.102 23 C -0.151 4.151 24 C -0.082 4.082 25 C -0.120 4.120 26 H 0.399 0.601 27 H 0.074 0.926 28 H -0.280 1.280 29 H -0.303 1.303 30 H 0.175 0.825 31 H 0.150 0.850 32 H 0.156 0.844 33 H 0.422 0.578 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.122 0.878 42 H 0.134 0.866 43 H 0.151 0.849 44 H 0.145 0.855 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.757 2.109 5.977 6.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.156 4.156 3 Si 0.691 3.309 4 C -0.187 4.187 5 C -0.074 4.074 6 N -0.151 5.151 7 C -0.037 4.037 8 C 0.273 3.727 9 O -0.455 6.455 10 N -0.363 5.363 11 C -0.003 4.003 12 C -0.143 4.143 13 C -0.130 4.130 14 H 0.096 0.904 15 C -0.184 4.184 16 C 0.007 3.993 17 H 0.132 0.868 18 F -0.203 7.203 19 C -0.195 4.195 20 C -0.016 4.016 21 C -0.157 4.157 22 C -0.121 4.121 23 C -0.170 4.170 24 C -0.101 4.101 25 C -0.125 4.125 26 H 0.250 0.750 27 H 0.092 0.908 28 H -0.206 1.206 29 H -0.231 1.231 30 H 0.192 0.808 31 H 0.168 0.832 32 H 0.173 0.827 33 H 0.261 0.739 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.143 0.857 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.140 0.860 42 H 0.152 0.848 43 H 0.169 0.831 44 H 0.162 0.838 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.655 2.289 6.483 7.072 hybrid contribution 0.505 -0.401 0.143 0.661 sum -1.150 1.887 6.626 6.985 Atomic orbital electron populations 1.86482 1.17590 1.82414 1.50918 1.24230 0.85373 1.10582 0.95409 0.94267 0.76659 0.74519 0.85463 1.20057 1.09585 0.91961 0.97132 1.21730 1.01658 0.94410 0.89584 1.43388 1.52177 1.03937 1.15576 1.21993 0.88900 1.08819 0.84021 1.21435 0.90565 0.76579 0.84072 1.90799 1.75781 1.48675 1.30243 1.45811 1.07213 1.70999 1.12245 1.21342 0.79008 1.00986 0.99001 1.21682 0.93280 1.04267 0.95035 1.22474 0.95199 0.96711 0.98604 0.90376 1.23610 0.97441 0.98065 0.99307 1.22748 0.82911 0.99472 0.94157 0.86828 1.92775 1.56437 1.93771 1.77352 1.23729 0.97276 0.97292 1.01203 1.18500 1.01608 0.86927 0.94548 1.20273 1.04956 0.88792 1.01656 1.21205 0.97569 0.98998 0.94309 1.20989 1.02028 0.97072 0.96892 1.20505 0.98600 0.91330 0.99641 1.19362 1.04531 0.93487 0.95073 0.75037 0.90793 1.20617 1.23062 0.80798 0.83249 0.82671 0.73938 0.93431 0.92826 0.88603 0.89354 0.85653 0.90782 0.91684 0.86018 0.84770 0.83127 0.83770 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.37 12.86 -148.98 -1.92 -4.28 16 2 C -0.05 -0.24 3.05 71.24 0.22 -0.02 16 3 Si 0.79 0.65 30.80 68.60 2.11 2.76 16 4 C -0.18 -2.07 5.61 -18.63 -0.10 -2.18 16 5 C 0.05 0.48 9.89 83.00 0.82 1.30 16 6 N -0.47 -3.47 2.27 -519.99 -1.18 -4.65 16 7 C 0.09 -0.23 6.48 85.64 0.56 0.32 16 8 C 0.49 1.33 7.90 87.66 0.69 2.02 16 9 O -0.58 -8.79 16.42 -3.02 -0.05 -8.84 16 10 N -0.71 3.42 5.56 -463.05 -2.57 0.85 16 11 C 0.12 -0.26 5.67 86.38 0.49 0.23 16 12 C -0.11 0.90 5.17 30.60 0.16 1.06 16 13 C -0.11 0.50 3.62 -10.27 -0.04 0.46 16 14 H 0.08 -0.03 8.13 -2.38 -0.02 -0.05 16 15 C -0.15 0.85 7.54 31.12 0.23 1.08 16 16 C 0.04 -0.09 5.69 31.12 0.18 0.09 16 17 H 0.11 -0.66 8.14 -2.39 -0.02 -0.68 16 18 F -0.22 -1.44 17.38 44.97 0.78 -0.66 16 19 C -0.16 0.64 7.53 31.12 0.23 0.87 16 20 C 0.09 0.99 6.80 39.03 0.27 1.26 16 21 C -0.14 -1.00 10.00 22.37 0.22 -0.78 16 22 C -0.10 -0.58 10.01 22.29 0.22 -0.35 16 23 C -0.15 -1.04 9.97 22.03 0.22 -0.82 16 24 C -0.08 -0.86 10.05 22.23 0.22 -0.64 16 25 C -0.12 -1.62 6.35 -20.20 -0.13 -1.75 16 26 H 0.40 -2.82 8.74 -74.06 -0.65 -3.47 16 27 H 0.07 0.24 7.96 -2.39 -0.02 0.23 16 28 H -0.28 -1.33 7.04 99.48 0.70 -0.63 16 29 H -0.30 -2.57 7.11 99.48 0.71 -1.86 16 30 H 0.18 0.86 6.30 -2.91 -0.02 0.84 16 31 H 0.15 -1.33 8.14 -2.38 -0.02 -1.35 16 32 H 0.16 -1.53 8.12 -2.39 -0.02 -1.55 16 33 H 0.42 -5.53 8.47 -92.71 -0.79 -6.32 16 34 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.10 -1.16 7.85 -2.39 -0.02 -1.18 16 37 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 38 H 0.13 -1.34 8.10 -2.39 -0.02 -1.36 16 39 H 0.07 -0.28 8.14 -2.39 -0.02 -0.29 16 40 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.12 -1.03 7.90 -2.39 -0.02 -1.05 16 42 H 0.13 0.29 8.06 -2.91 -0.02 0.26 16 43 H 0.15 -0.04 8.06 -2.91 -0.02 -0.07 16 44 H 0.14 0.24 8.06 -2.91 -0.02 0.22 16 45 H 0.13 0.98 8.06 -2.91 -0.02 0.96 16 Total: 0.00 -32.08 381.55 1.25 -30.83 By element: Atomic # 1 Polarization: -17.79 SS G_CDS: -0.39 Total: -18.18 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 4.46 Total: 2.16 kcal Atomic # 7 Polarization: -0.05 SS G_CDS: -3.75 Total: -3.80 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -1.96 Total: -13.12 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.78 Total: -0.66 kcal Atomic # 14 Polarization: 0.65 SS G_CDS: 2.11 Total: 2.76 kcal Total: -32.08 1.25 -30.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14412250_9818708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.004 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds