Wall clock time and date at job start Tue Mar 9 2021 13:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35529 * 125.68119 * 2 1 4 4 C 1.35450 * 108.87157 * 179.70786 * 3 2 1 5 5 C 1.50697 * 126.06880 * 180.27036 * 4 3 2 6 6 O 1.42897 * 109.47435 * 120.20049 * 5 4 3 7 7 Si 1.86294 * 109.47282 * 0.19583 * 5 4 3 8 8 C 1.39834 * 107.86538 * 0.43583 * 4 3 2 9 9 C 1.37652 * 125.67038 * 179.97438 * 2 1 3 10 10 C 1.46676 * 126.23906 * 0.03161 * 9 2 1 11 11 O 1.21696 * 119.99646 * 354.25815 * 10 9 2 12 12 N 1.34769 * 120.00134 * 174.24818 * 10 9 2 13 13 C 1.46499 * 120.00065 * 185.09641 * 12 10 9 14 14 H 1.08996 * 112.85227 * 336.20015 * 13 12 10 15 15 C 1.53781 * 113.61380 * 107.50698 * 13 12 10 16 16 C 1.53788 * 87.08224 * 139.98120 * 15 13 12 17 17 H 1.08998 * 113.68870 * 89.12654 * 16 15 13 18 18 C 1.52997 * 113.61203 * 220.01780 * 16 15 13 19 19 N 1.46496 * 109.47355 * 272.49280 * 18 16 15 20 20 C 1.36886 * 126.40390 * 269.72164 * 19 18 16 21 21 C 1.34668 * 106.81712 * 179.83846 * 20 19 18 22 22 N 1.34120 * 108.02336 * 0.42143 * 21 20 19 23 23 C 1.30503 * 109.25853 * 359.72971 * 22 21 20 24 24 C 1.53780 * 87.07678 * 334.56599 * 16 15 13 25 25 H 1.09004 * 109.46926 * 273.92069 * 1 2 3 26 26 H 1.09003 * 109.47017 * 33.91155 * 1 2 3 27 27 H 1.09000 * 109.47774 * 153.92143 * 1 2 3 28 28 H 1.08002 * 125.56255 * 0.02562 * 3 2 1 29 29 H 1.09003 * 109.46955 * 240.19758 * 5 4 3 30 30 H 0.96700 * 113.99717 * 299.99632 * 6 5 4 31 31 H 1.48493 * 110.00035 * 58.68163 * 7 5 4 32 32 H 1.48494 * 110.00224 * 180.02562 * 7 5 4 33 33 H 1.08004 * 126.46214 * 179.83180 * 8 4 3 34 34 H 0.97007 * 120.00419 * 5.10341 * 12 10 9 35 35 H 1.09003 * 113.61600 * 254.52710 * 15 13 12 36 36 H 1.08996 * 113.61703 * 25.43211 * 15 13 12 37 37 H 1.08996 * 109.47448 * 32.49883 * 18 16 15 38 38 H 1.09003 * 109.47105 * 152.49716 * 18 16 15 39 39 H 1.08004 * 126.58377 * 359.97438 * 20 19 18 40 40 H 1.08005 * 125.98387 * 180.18446 * 21 20 19 41 41 H 1.07998 * 125.65063 * 179.97438 * 23 22 21 42 42 H 1.08993 * 113.61357 * 270.87791 * 24 16 15 43 43 H 1.09009 * 113.60982 * 139.98607 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7092 0.0065 5 6 4.7537 1.6186 0.0146 6 8 5.5361 1.3640 1.1829 7 14 4.1888 3.3939 0.0202 8 6 3.5779 -0.6889 0.0007 9 6 2.2677 -1.1183 0.0005 10 6 1.8122 -2.5125 0.0005 11 8 0.6264 -2.7652 0.1054 12 7 2.7069 -3.5137 -0.1160 13 6 2.2450 -4.8994 -0.2284 14 1 1.2514 -5.0500 0.1936 15 6 2.4145 -5.4929 -1.6369 16 6 2.8464 -6.7989 -0.9492 17 1 2.0177 -7.4705 -0.7250 18 6 4.0101 -7.5040 -1.6487 19 7 3.4882 -8.3910 -2.6911 20 6 3.1440 -9.7073 -2.5404 21 6 2.7110 -10.1368 -3.7410 22 7 2.7974 -9.1135 -4.6037 23 6 3.2621 -8.0644 -3.9819 24 6 3.2791 -5.9339 0.2463 25 1 -0.3633 0.0703 1.0253 26 1 -0.3633 0.8529 -0.5734 27 1 -0.3634 -0.9230 -0.4517 28 1 1.9082 2.1235 0.0004 29 1 5.3565 1.4320 -0.8742 30 1 5.0623 1.5100 2.0130 31 1 3.3396 3.6529 1.2104 32 1 5.3645 4.3010 0.0275 33 1 4.4583 -1.3147 0.0010 34 1 3.6567 -3.3168 -0.1253 35 1 1.4791 -5.5793 -2.1898 36 1 3.2081 -5.0216 -2.2167 37 1 4.6672 -6.7605 -2.0997 38 1 4.5706 -8.0899 -0.9202 39 1 3.2056 -10.2888 -1.6323 40 1 2.3597 -11.1321 -3.9700 41 1 3.4373 -7.0957 -4.4261 42 1 4.3090 -5.5832 0.1814 43 1 3.0417 -6.3763 1.2139 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_10803934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:35 Heat of formation + Delta-G solvation = 79.673584 kcal Electronic energy + Delta-G solvation = -25703.716923 eV Core-core repulsion = 21946.711766 eV Total energy + Delta-G solvation = -3757.005158 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.93739 -42.56098 -40.92155 -39.30831 -37.81380 -35.53383 -34.32681 -33.62809 -30.98443 -30.35687 -28.76632 -28.25018 -26.74184 -25.79819 -24.80909 -23.02826 -22.25421 -21.73222 -21.29230 -20.99020 -20.18045 -18.85147 -18.42140 -17.84170 -17.23343 -16.83736 -16.72987 -16.26827 -16.05473 -15.86956 -15.60122 -15.40115 -15.24659 -15.01368 -14.82253 -14.46911 -14.25682 -14.05841 -14.00033 -13.60150 -13.46894 -13.38773 -13.24092 -13.17942 -12.93630 -12.44370 -12.24175 -11.98694 -11.80248 -11.49617 -11.16308 -10.89781 -10.50647 -10.46406 -10.16209 -9.69903 -9.43346 -9.27020 -4.86202 0.38863 1.16523 1.37855 1.56410 1.59916 1.68349 1.94003 2.04220 2.24401 2.25863 2.33316 3.36531 3.46738 3.54238 3.65742 3.69734 3.79051 3.83842 3.89992 4.03283 4.08207 4.12564 4.19722 4.23156 4.34409 4.40210 4.43423 4.62082 4.68545 4.70556 4.73515 4.73790 4.77718 4.80045 4.81914 4.94970 5.01876 5.15535 5.20536 5.36997 5.50129 5.67799 5.84319 5.88651 6.15157 6.33384 6.45397 6.61264 7.10217 7.17835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.414 5.414 3 C 0.033 3.967 4 C -0.216 4.216 5 C -0.042 4.042 6 O -0.551 6.551 7 Si 0.764 3.236 8 C -0.109 4.109 9 C -0.080 4.080 10 C 0.586 3.414 11 O -0.587 6.587 12 N -0.694 5.694 13 C 0.117 3.883 14 H 0.092 0.908 15 C -0.144 4.144 16 C -0.115 4.115 17 H 0.088 0.912 18 C 0.114 3.886 19 N -0.453 5.453 20 C -0.049 4.049 21 C -0.067 4.067 22 N -0.547 5.547 23 C 0.176 3.824 24 C -0.118 4.118 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.084 0.916 28 H 0.198 0.802 29 H 0.121 0.879 30 H 0.384 0.616 31 H -0.283 1.283 32 H -0.308 1.308 33 H 0.161 0.839 34 H 0.417 0.583 35 H 0.053 0.947 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.200 0.800 40 H 0.171 0.829 41 H 0.224 0.776 42 H 0.118 0.882 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 2.928 2.480 4.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.086 5.086 3 C -0.104 4.104 4 C -0.222 4.222 5 C -0.152 4.152 6 O -0.358 6.358 7 Si 0.670 3.330 8 C -0.135 4.135 9 C -0.193 4.193 10 C 0.375 3.625 11 O -0.470 6.470 12 N -0.345 5.345 13 C 0.012 3.988 14 H 0.110 0.890 15 C -0.182 4.182 16 C -0.135 4.135 17 H 0.106 0.894 18 C -0.007 4.007 19 N -0.135 5.135 20 C -0.182 4.182 21 C -0.214 4.214 22 N -0.266 5.266 23 C -0.107 4.107 24 C -0.156 4.156 25 H 0.098 0.902 26 H 0.132 0.868 27 H 0.103 0.897 28 H 0.215 0.785 29 H 0.139 0.861 30 H 0.232 0.768 31 H -0.209 1.209 32 H -0.237 1.237 33 H 0.178 0.822 34 H 0.255 0.745 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.217 0.783 40 H 0.189 0.811 41 H 0.240 0.760 42 H 0.136 0.864 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.703 3.362 1.807 4.180 hybrid contribution 0.364 -0.473 1.864 1.957 sum 2.068 2.889 3.671 5.109 Atomic orbital electron populations 1.22420 0.75030 1.05957 1.04511 1.44033 1.07578 1.04928 1.52017 1.22314 0.89941 0.92477 1.05622 1.19834 0.94026 0.94804 1.13579 1.24445 0.92482 1.07795 0.90497 1.86552 1.42241 1.90324 1.16714 0.94388 0.79543 0.72116 0.86952 1.21419 0.94207 0.95104 1.02755 1.20116 0.91016 0.87548 1.20606 1.17271 0.85400 0.84465 0.75328 1.90781 1.18084 1.85392 1.52715 1.45520 1.10062 1.05476 1.73434 1.22507 0.99605 0.79116 0.97558 0.89034 1.23592 1.02360 0.95713 0.96582 1.22625 0.98428 0.95408 0.97028 0.89363 1.22188 0.95718 0.93573 0.89205 1.45757 1.47501 1.09955 1.10266 1.23154 1.07368 0.85822 1.01883 1.22633 1.08210 0.99703 0.90872 1.70237 1.20626 1.00978 1.34782 1.25413 1.02917 1.00615 0.81738 1.23315 1.00172 0.93997 0.98153 0.90192 0.86793 0.89686 0.78512 0.86092 0.76756 1.20938 1.23677 0.82182 0.74478 0.92854 0.87603 0.86459 0.86759 0.78293 0.81141 0.76014 0.86421 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.10 10.63 127.77 1.36 1.26 16 2 N -0.41 -0.39 3.16 -534.30 -1.69 -2.08 16 3 C 0.03 -0.09 9.94 83.48 0.83 0.74 16 4 C -0.22 0.35 5.44 -20.12 -0.11 0.24 16 5 C -0.04 0.11 3.02 71.23 0.22 0.33 16 6 O -0.55 -0.43 12.88 -148.98 -1.92 -2.35 16 7 Si 0.76 -3.02 30.59 68.60 2.10 -0.92 16 8 C -0.11 0.09 10.29 22.57 0.23 0.32 16 9 C -0.08 -0.20 6.88 40.35 0.28 0.08 16 10 C 0.59 2.58 7.77 86.45 0.67 3.25 16 11 O -0.59 -6.85 14.24 -4.34 -0.06 -6.91 16 12 N -0.69 2.12 5.34 -444.01 -2.37 -0.25 16 13 C 0.12 -0.44 4.27 45.52 0.19 -0.24 16 14 H 0.09 0.20 7.41 -2.39 -0.02 0.18 16 15 C -0.14 0.80 7.43 31.12 0.23 1.03 16 16 C -0.12 0.97 3.97 -10.27 -0.04 0.93 16 17 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 18 C 0.11 -1.13 5.99 86.38 0.52 -0.62 16 19 N -0.45 0.87 2.75 -529.07 -1.46 -0.59 16 20 C -0.05 -0.02 11.58 83.09 0.96 0.94 16 21 C -0.07 -0.44 11.87 83.52 0.99 0.55 16 22 N -0.55 -5.67 11.25 -200.31 -2.25 -7.92 16 23 C 0.18 0.49 12.56 180.26 2.26 2.75 16 24 C -0.12 1.22 7.39 31.12 0.23 1.45 16 25 H 0.08 -0.17 8.14 -2.38 -0.02 -0.19 16 26 H 0.11 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H 0.08 0.26 6.23 -2.39 -0.01 0.25 16 28 H 0.20 -1.71 6.19 -2.91 -0.02 -1.73 16 29 H 0.12 -0.49 7.96 -2.39 -0.02 -0.51 16 30 H 0.38 -1.59 8.70 -74.06 -0.64 -2.24 16 31 H -0.28 0.06 7.11 99.48 0.71 0.76 16 32 H -0.31 -1.43 7.11 99.48 0.71 -0.72 16 33 H 0.16 -0.82 7.45 -2.91 -0.02 -0.84 16 34 H 0.42 -3.64 7.63 -92.70 -0.71 -4.35 16 35 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.11 -0.92 7.90 -2.39 -0.02 -0.94 16 37 H 0.12 -1.59 7.84 -2.39 -0.02 -1.61 16 38 H 0.11 -1.47 8.14 -2.39 -0.02 -1.49 16 39 H 0.20 -1.23 8.06 -2.91 -0.02 -1.25 16 40 H 0.17 0.64 8.06 -2.91 -0.02 0.61 16 41 H 0.22 -0.82 8.06 -2.91 -0.02 -0.85 16 42 H 0.12 -1.74 8.08 -2.39 -0.02 -1.75 16 43 H 0.08 -0.83 8.14 -2.38 -0.02 -0.85 16 Total: 0.00 -27.82 361.87 0.90 -26.92 By element: Atomic # 1 Polarization: -18.63 SS G_CDS: -0.27 Total: -18.90 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 8.83 Total: 13.01 kcal Atomic # 7 Polarization: -3.07 SS G_CDS: -7.77 Total: -10.84 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -1.98 Total: -9.26 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: 2.10 Total: -0.92 kcal Total: -27.82 0.90 -26.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_10803934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.589 kcal (2) G-P(sol) polarization free energy of solvation -27.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds