Wall clock time and date at job start Tue Mar 9 2021 13:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35654 * 116.99686 * 2 1 4 4 C 1.38407 * 120.12379 * 0.02562 * 3 2 1 5 5 C 1.38719 * 120.03501 * 179.97438 * 4 3 2 6 6 O 1.35710 * 119.86525 * 179.97438 * 5 4 3 7 7 C 1.42899 * 116.99992 * 359.97438 * 6 5 4 8 8 C 1.39145 * 120.27452 * 0.02562 * 5 4 3 9 9 C 1.50695 * 119.88151 * 179.97438 * 8 5 4 10 10 O 1.42899 * 109.47558 * 74.99938 * 9 8 5 11 11 Si 1.86299 * 109.47178 * 195.00116 * 9 8 5 12 12 C 1.37587 * 120.23890 * 359.67166 * 8 5 4 13 13 C 1.39819 * 119.96250 * 0.62938 * 12 8 5 14 14 C 1.47301 * 120.13595 * 179.67354 * 13 12 8 15 15 O 1.21623 * 120.00000 * 179.72180 * 14 13 12 16 16 N 1.34773 * 120.00070 * 359.97438 * 14 13 12 17 17 C 1.46500 * 120.00431 * 179.72645 * 16 14 13 18 18 H 1.09006 * 112.84642 * 336.19847 * 17 16 14 19 19 C 1.53774 * 113.61696 * 107.50253 * 17 16 14 20 20 C 1.53780 * 87.08094 * 139.98559 * 19 17 16 21 21 H 1.09001 * 113.69257 * 89.13566 * 20 19 17 22 22 C 1.53003 * 113.61395 * 220.01964 * 20 19 17 23 23 N 1.46495 * 109.47305 * 272.49972 * 22 20 19 24 24 C 1.36882 * 126.39544 * 269.71163 * 23 22 20 25 25 C 1.34669 * 106.81731 * 179.84147 * 24 23 22 26 26 N 1.34127 * 108.02171 * 0.42282 * 25 24 23 27 27 C 1.30501 * 109.25444 * 359.73336 * 26 25 24 28 28 C 1.53780 * 113.61736 * 205.00698 * 17 16 14 29 29 H 1.09002 * 109.47419 * 299.99451 * 1 2 3 30 30 H 1.08995 * 109.47311 * 60.00505 * 1 2 3 31 31 H 1.09002 * 109.46559 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.98145 * 359.97438 * 4 3 2 33 33 H 1.09004 * 109.46641 * 60.00262 * 7 6 5 34 34 H 1.09000 * 109.47604 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.47442 * 300.00310 * 7 6 5 36 36 H 1.09002 * 109.47343 * 314.99913 * 9 8 5 37 37 H 0.96703 * 113.99579 * 59.99881 * 10 9 8 38 38 H 1.48500 * 110.00497 * 58.68005 * 11 9 8 39 39 H 1.48500 * 110.00406 * 179.97438 * 11 9 8 40 40 H 1.07996 * 120.02042 * 180.29474 * 12 8 5 41 41 H 0.97000 * 120.00112 * 359.73083 * 16 14 13 42 42 H 1.08994 * 113.61732 * 254.53524 * 19 17 16 43 43 H 1.09001 * 113.61275 * 25.43630 * 19 17 16 44 44 H 1.09004 * 109.47319 * 32.49804 * 22 20 19 45 45 H 1.08996 * 109.47328 * 152.49665 * 22 20 19 46 46 H 1.08002 * 126.59134 * 359.97438 * 24 23 22 47 47 H 1.08003 * 125.98922 * 180.18892 * 25 24 23 48 48 H 1.07993 * 125.64967 * 180.02562 * 27 26 25 49 49 H 1.09001 * 113.61340 * 334.56146 * 28 17 16 50 50 H 1.08992 * 113.62029 * 105.46665 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2934 2.3711 0.0005 5 6 1.9250 3.6061 0.0011 6 8 1.1849 4.7437 0.0011 7 6 -0.2361 4.5931 -0.0001 8 6 3.3143 3.6835 0.0005 9 6 3.9913 5.0299 0.0005 10 8 3.8943 5.6119 1.3020 11 14 5.7858 4.8227 -0.4548 12 6 4.0723 2.5353 0.0063 13 6 3.4461 1.2852 -0.0006 14 6 4.2539 0.0534 -0.0018 15 8 3.7066 -1.0327 -0.0027 16 7 5.5994 0.1299 0.0033 17 6 6.4029 -1.0951 0.0083 18 1 5.8649 -1.9524 0.4128 19 6 7.1002 -1.3798 -1.3324 20 6 8.3219 -1.8266 -0.5121 21 1 8.3106 -2.8847 -0.2505 22 6 9.6576 -1.3761 -1.1071 23 7 10.1211 -2.3719 -2.0765 24 6 10.9191 -3.4522 -1.8126 25 6 11.0960 -4.1003 -2.9798 26 7 10.4320 -3.4287 -3.9321 27 6 9.8456 -2.3921 -3.3984 28 6 7.8062 -0.9091 0.6090 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 0.2148 2.3165 0.0005 33 1 -0.5439 4.0434 0.8895 34 1 -0.7058 5.5767 -0.0004 35 1 -0.5426 4.0442 -0.8905 36 1 3.5050 5.6811 -0.7258 37 1 4.3068 5.0851 2.0002 38 1 5.9005 4.1892 -1.7930 39 1 6.4646 6.1435 -0.4590 40 1 5.1503 2.5995 0.0107 41 1 6.0359 0.9962 0.0038 42 1 6.6384 -2.1860 -1.9022 43 1 7.2788 -0.4860 -1.9301 44 1 9.5276 -0.4160 -1.6065 45 1 10.3944 -1.2743 -0.3103 46 1 11.3266 -3.7324 -0.8525 47 1 11.6746 -5.0007 -3.1244 48 1 9.2400 -1.6704 -3.9263 49 1 8.1778 0.1135 0.5420 50 1 7.9142 -1.3352 1.6064 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_12297780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:47 Heat of formation + Delta-G solvation = -11.025409 kcal Electronic energy + Delta-G solvation = -34174.851176 eV Core-core repulsion = 29558.210782 eV Total energy + Delta-G solvation = -4616.640394 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.89887 -42.11301 -40.94137 -40.11000 -39.24574 -38.42947 -36.97110 -35.34796 -33.98240 -32.24037 -31.68825 -30.34176 -29.01871 -28.78862 -28.07850 -26.63599 -26.13121 -25.11128 -23.72665 -22.60945 -22.22191 -21.75409 -21.48531 -20.66151 -19.98727 -18.78489 -18.48329 -18.05581 -17.89067 -17.27549 -17.20833 -16.64928 -16.51389 -16.36011 -16.18195 -15.91443 -15.78218 -15.72518 -15.60599 -15.33450 -15.22620 -14.82365 -14.69561 -14.22896 -14.18650 -14.02115 -14.01668 -13.54619 -13.41624 -13.33174 -13.23604 -12.84611 -12.68184 -12.56408 -12.54320 -12.26116 -12.16131 -11.97240 -11.87168 -11.65516 -11.40311 -10.88737 -10.86257 -10.43354 -10.36948 -10.03807 -9.91146 -9.40181 -9.19356 -5.04333 -0.26317 0.07663 1.20132 1.32375 1.67064 1.75781 1.97976 2.03592 2.10812 2.14456 2.21087 2.27472 2.61012 3.44117 3.46200 3.52861 3.56569 3.64552 3.73033 3.78388 3.84049 3.89537 3.92738 4.10311 4.14545 4.16027 4.18800 4.21848 4.23894 4.25076 4.26345 4.29089 4.47952 4.53504 4.61235 4.63905 4.65356 4.74474 4.79005 4.81605 4.84309 4.89800 4.93568 5.02081 5.04529 5.13188 5.27785 5.30694 5.41589 5.64666 5.87510 6.01693 6.27515 6.37436 6.60439 6.86482 7.20923 7.30513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.304 6.304 3 C 0.215 3.785 4 C -0.313 4.313 5 C 0.211 3.789 6 O -0.315 6.315 7 C 0.013 3.987 8 C -0.204 4.204 9 C -0.066 4.066 10 O -0.555 6.555 11 Si 0.782 3.218 12 C 0.012 3.988 13 C -0.226 4.226 14 C 0.563 3.437 15 O -0.569 6.569 16 N -0.704 5.704 17 C 0.117 3.883 18 H 0.087 0.913 19 C -0.149 4.149 20 C -0.117 4.117 21 H 0.085 0.915 22 C 0.113 3.887 23 N -0.452 5.452 24 C -0.047 4.047 25 C -0.069 4.069 26 N -0.549 5.549 27 C 0.175 3.825 28 C -0.115 4.115 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.160 0.840 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.393 0.607 38 H -0.271 1.271 39 H -0.297 1.297 40 H 0.173 0.827 41 H 0.415 0.585 42 H 0.046 0.954 43 H 0.107 0.893 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.201 0.799 47 H 0.170 0.830 48 H 0.222 0.778 49 H 0.126 0.874 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.462 5.029 6.010 7.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.215 6.215 3 C 0.165 3.835 4 C -0.332 4.332 5 C 0.163 3.837 6 O -0.226 6.226 7 C -0.082 4.082 8 C -0.205 4.205 9 C -0.175 4.175 10 O -0.362 6.362 11 Si 0.686 3.314 12 C -0.006 4.006 13 C -0.230 4.230 14 C 0.352 3.648 15 O -0.449 6.449 16 N -0.357 5.357 17 C 0.012 3.988 18 H 0.105 0.895 19 C -0.188 4.188 20 C -0.137 4.137 21 H 0.103 0.897 22 C -0.008 4.008 23 N -0.134 5.134 24 C -0.181 4.181 25 C -0.216 4.216 26 N -0.268 5.268 27 C -0.108 4.108 28 C -0.153 4.153 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.130 0.870 32 H 0.177 0.823 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.243 0.757 38 H -0.198 1.198 39 H -0.225 1.225 40 H 0.190 0.810 41 H 0.254 0.746 42 H 0.065 0.935 43 H 0.125 0.875 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.218 0.782 47 H 0.187 0.813 48 H 0.239 0.761 49 H 0.144 0.856 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.410 4.809 4.412 6.539 hybrid contribution -1.497 0.306 0.295 1.556 sum -1.087 5.115 4.707 7.036 Atomic orbital electron populations 1.23454 0.76650 1.05693 1.02561 1.86365 1.23088 1.25982 1.86066 1.19036 0.91360 0.84567 0.88510 1.21409 1.01949 0.90884 1.18977 1.18987 0.91154 0.84809 0.88796 1.86140 1.21037 1.28874 1.86563 1.23450 0.76357 1.05786 1.02557 1.19643 0.90782 0.96942 1.13173 1.25158 1.11833 0.91510 0.88962 1.86515 1.82708 1.50204 1.16815 0.94336 0.73049 0.81495 0.82519 1.20870 0.99856 0.88430 0.91409 1.19193 0.90650 0.94079 1.19103 1.18073 0.82959 0.88118 0.75640 1.90828 1.72546 1.30477 1.51015 1.45707 1.04695 1.10325 1.74971 1.22445 0.90930 0.87871 0.97586 0.89488 1.23625 0.96109 1.01979 0.97047 1.22638 0.92937 1.00508 0.97613 0.89696 1.22241 0.96128 0.90549 0.91872 1.45769 1.36873 1.21672 1.09060 1.23155 1.01433 0.91587 1.01887 1.22627 1.05793 1.03257 0.89951 1.70231 1.14112 1.07966 1.34498 1.25379 1.03472 0.99832 0.82113 1.23337 0.91634 1.02035 0.98310 0.91019 0.91232 0.86957 0.82271 0.91249 0.86361 0.91359 0.88700 0.75730 1.19763 1.22515 0.81011 0.74619 0.93506 0.87502 0.86270 0.86469 0.78185 0.81253 0.76149 0.85551 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.30 -2.42 8.56 -68.73 -0.59 -3.01 16 3 C 0.21 1.12 6.70 22.82 0.15 1.27 16 4 C -0.31 -0.42 8.01 22.43 0.18 -0.24 16 5 C 0.21 0.43 6.67 22.60 0.15 0.58 16 6 O -0.31 -0.76 9.80 -90.31 -0.88 -1.65 16 7 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 8 C -0.20 0.15 5.27 -19.80 -0.10 0.04 16 9 C -0.07 0.10 2.37 71.23 0.17 0.27 16 10 O -0.55 0.26 12.88 -148.98 -1.92 -1.66 16 11 Si 0.78 -5.18 29.91 68.60 2.05 -3.12 16 12 C 0.01 -0.05 8.14 22.50 0.18 0.14 16 13 C -0.23 -0.65 5.89 -20.00 -0.12 -0.76 16 14 C 0.56 2.95 7.76 86.63 0.67 3.63 16 15 O -0.57 -8.60 14.75 16.86 0.25 -8.35 16 16 N -0.70 2.92 5.30 -443.42 -2.35 0.57 16 17 C 0.12 -0.49 4.24 45.51 0.19 -0.29 16 18 H 0.09 0.23 7.46 -2.38 -0.02 0.21 16 19 C -0.15 0.80 7.43 31.12 0.23 1.03 16 20 C -0.12 1.06 3.96 -10.27 -0.04 1.02 16 21 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 22 C 0.11 -1.23 5.99 86.38 0.52 -0.71 16 23 N -0.45 0.98 2.75 -529.07 -1.46 -0.48 16 24 C -0.05 -0.01 11.58 83.09 0.96 0.95 16 25 C -0.07 -0.47 11.87 83.52 0.99 0.53 16 26 N -0.55 -5.87 11.25 -200.31 -2.25 -8.12 16 27 C 0.17 0.52 12.56 180.26 2.26 2.78 16 28 C -0.11 1.40 7.39 31.12 0.23 1.63 16 29 H 0.07 -0.32 7.66 -2.39 -0.02 -0.34 16 30 H 0.07 -0.29 7.66 -2.39 -0.02 -0.30 16 31 H 0.11 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.16 -0.49 4.50 -2.91 -0.01 -0.51 16 33 H 0.07 -0.46 7.65 -2.39 -0.02 -0.48 16 34 H 0.12 -0.88 8.14 -2.39 -0.02 -0.90 16 35 H 0.07 -0.46 7.65 -2.39 -0.02 -0.48 16 36 H 0.10 0.19 7.82 -2.39 -0.02 0.17 16 37 H 0.39 -3.75 8.70 -74.06 -0.64 -4.40 16 38 H -0.27 0.85 7.11 99.48 0.71 1.55 16 39 H -0.30 -0.45 7.11 99.48 0.71 0.26 16 40 H 0.17 -2.12 3.44 -2.91 -0.01 -2.13 16 41 H 0.42 -5.09 6.75 -92.71 -0.63 -5.72 16 42 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 43 H 0.11 -0.97 7.90 -2.39 -0.02 -0.98 16 44 H 0.12 -1.77 7.84 -2.38 -0.02 -1.79 16 45 H 0.12 -1.68 8.14 -2.39 -0.02 -1.70 16 46 H 0.20 -1.31 8.06 -2.91 -0.02 -1.33 16 47 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 48 H 0.22 -0.73 8.06 -2.91 -0.02 -0.76 16 49 H 0.13 -2.32 8.08 -2.39 -0.02 -2.34 16 50 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16 Total: 0.00 -36.40 410.96 1.47 -34.93 By element: Atomic # 1 Polarization: -22.88 SS G_CDS: -0.23 Total: -23.11 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 8.86 Total: 14.00 kcal Atomic # 7 Polarization: -1.97 SS G_CDS: -6.06 Total: -8.03 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -3.14 Total: -14.67 kcal Atomic # 14 Polarization: -5.18 SS G_CDS: 2.05 Total: -3.12 kcal Total: -36.40 1.47 -34.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_12297780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.904 kcal (2) G-P(sol) polarization free energy of solvation -36.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds