Wall clock time and date at job start Tue Mar 9 2021 13:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35655 * 117.00241 * 2 1 4 4 C 1.40133 * 120.15163 * 179.97438 * 3 2 1 5 5 C 1.47542 * 120.19236 * 359.95570 * 4 3 2 6 6 O 1.21593 * 119.99886 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00165 * 180.02562 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27934 * 7 5 4 9 9 H 1.09002 * 112.85447 * 23.52517 * 8 7 5 10 10 C 1.53782 * 113.61542 * 154.72141 * 8 7 5 11 11 C 1.53779 * 87.08025 * 139.97648 * 10 8 7 12 12 H 1.09005 * 113.61412 * 89.11972 * 11 10 8 13 13 C 1.53002 * 113.61602 * 219.93445 * 11 10 8 14 14 N 1.46500 * 109.47209 * 185.00699 * 13 11 10 15 15 C 1.36874 * 126.40031 * 89.99772 * 14 13 11 16 16 C 1.34670 * 106.81873 * 180.02562 * 15 14 13 17 17 N 1.34126 * 108.01842 * 359.97438 * 16 15 14 18 18 C 1.30496 * 109.25920 * 359.72867 * 17 16 15 19 19 C 1.53777 * 87.08273 * 334.57004 * 11 10 8 20 20 C 1.39700 * 119.62036 * 180.23646 * 4 3 2 21 21 C 1.37798 * 119.90450 * 359.50642 * 20 4 3 22 22 C 1.50701 * 119.84824 * 180.23592 * 21 20 4 23 23 O 1.42898 * 109.47192 * 65.24124 * 22 21 20 24 24 Si 1.86299 * 109.46790 * 185.24102 * 22 21 20 25 25 C 1.38536 * 120.29908 * 0.47659 * 21 20 4 26 26 C 1.38065 * 120.39145 * 359.78025 * 25 21 20 27 27 H 1.09001 * 109.47277 * 59.99796 * 1 2 3 28 28 H 1.08993 * 109.47369 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46820 * 299.99795 * 1 2 3 30 30 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 31 31 H 1.08997 * 113.61719 * 254.52880 * 10 8 7 32 32 H 1.09000 * 113.61236 * 25.34621 * 10 8 7 33 33 H 1.09004 * 109.47236 * 305.00401 * 13 11 10 34 34 H 1.08999 * 109.46855 * 65.00155 * 13 11 10 35 35 H 1.07999 * 126.59386 * 0.04290 * 15 14 13 36 36 H 1.07999 * 125.99276 * 180.02562 * 16 15 14 37 37 H 1.07995 * 125.65704 * 180.29214 * 18 17 16 38 38 H 1.09001 * 113.61338 * 270.87786 * 19 11 10 39 39 H 1.09000 * 113.61355 * 139.98049 * 19 11 10 40 40 H 1.08003 * 120.05258 * 179.73012 * 20 4 3 41 41 H 1.08998 * 109.47104 * 305.23530 * 22 21 20 42 42 H 0.96698 * 114.00323 * 59.99375 * 23 22 21 43 43 H 1.48508 * 109.99979 * 180.02562 * 24 22 21 44 44 H 1.48501 * 110.00124 * 301.31488 * 24 22 21 45 45 H 1.08005 * 119.80560 * 179.75685 * 25 21 20 46 46 H 1.08000 * 119.95365 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4441 1.2857 0.0005 5 6 4.2551 0.0531 0.0021 6 8 3.7095 -1.0336 0.0024 7 7 5.6005 0.1316 0.0031 8 6 6.4057 -1.0923 -0.0015 9 1 5.8691 -1.9505 -0.4063 10 6 7.8090 -0.9042 -0.6017 11 6 8.3256 -1.8210 0.5198 12 1 8.3145 -2.8792 0.2586 13 6 9.6614 -1.3696 1.1138 14 7 10.1258 -2.3648 2.0834 15 6 10.9195 -3.4480 1.8187 16 6 11.1015 -4.0926 2.9871 17 7 10.4374 -3.4208 3.9393 18 6 9.8556 -2.3814 3.4065 19 6 7.1030 -1.3759 1.3394 20 6 4.0668 2.5362 0.0055 21 6 3.3038 3.6836 -0.0004 22 6 3.9769 5.0320 -0.0003 23 8 4.6999 5.2034 -1.2209 24 14 2.6886 6.3691 0.1514 25 6 1.9208 3.6033 -0.0013 26 6 1.2925 2.3739 -0.0009 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 6.0357 0.9985 0.0025 31 1 7.9181 -1.3303 -1.5990 32 1 8.1784 0.1191 -0.5359 33 1 10.3978 -1.2680 0.3166 34 1 9.5312 -0.4093 1.6127 35 1 11.3227 -3.7313 0.8577 36 1 11.6813 -4.9921 3.1321 37 1 9.2550 -1.6561 3.9354 38 1 7.2800 -0.4819 1.9373 39 1 6.6421 -2.1829 1.9092 40 1 5.1447 2.6036 0.0104 41 1 4.6659 5.0941 0.8420 42 1 4.1486 5.1597 -2.0142 43 1 3.3395 7.7039 0.1520 44 1 1.7243 6.2754 -0.9740 45 1 1.3305 4.5078 -0.0020 46 1 0.2139 2.3195 -0.0013 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_12496546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:27 Heat of formation + Delta-G solvation = 25.402131 kcal Electronic energy + Delta-G solvation = -29378.361691 eV Core-core repulsion = 25237.520725 eV Total energy + Delta-G solvation = -4140.840966 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.93700 -41.83034 -40.74587 -39.28198 -39.20238 -37.22230 -35.42388 -34.13832 -32.46462 -31.83000 -30.37867 -28.87954 -28.44308 -26.73827 -26.15984 -25.61312 -23.88089 -22.49121 -22.25700 -21.73888 -21.52554 -20.68433 -19.44835 -18.50592 -18.35266 -18.17548 -17.34809 -16.91108 -16.88391 -16.39537 -16.11947 -16.07445 -15.92340 -15.83015 -15.68782 -15.29184 -14.83921 -14.77693 -14.56296 -14.52586 -14.28046 -14.06798 -13.57127 -13.51282 -13.44434 -13.40779 -13.12002 -12.91493 -12.45110 -12.25594 -12.19355 -12.05389 -11.96648 -11.65347 -11.49127 -11.02871 -10.89942 -10.55492 -10.47259 -10.26884 -9.99595 -9.43415 -9.30563 -4.88787 -0.26883 0.21481 1.16555 1.34273 1.61408 1.75385 1.92857 1.99774 2.12871 2.24558 2.26502 2.66802 3.37194 3.42727 3.46974 3.56710 3.64044 3.69961 3.73332 3.79033 3.89830 3.97480 4.08467 4.12158 4.14500 4.21607 4.28779 4.33953 4.39586 4.44023 4.61937 4.63153 4.67055 4.69857 4.70892 4.75236 4.79088 4.81865 4.92349 4.96672 5.02178 5.10534 5.20470 5.27495 5.37119 5.54717 5.57097 5.84266 6.29163 6.33274 6.52312 6.52644 7.17671 7.21949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.314 6.314 3 C 0.169 3.831 4 C -0.197 4.197 5 C 0.556 3.444 6 O -0.568 6.568 7 N -0.704 5.704 8 C 0.115 3.885 9 H 0.086 0.914 10 C -0.117 4.117 11 C -0.115 4.115 12 H 0.086 0.914 13 C 0.115 3.885 14 N -0.453 5.453 15 C -0.049 4.049 16 C -0.067 4.067 17 N -0.547 5.547 18 C 0.176 3.824 19 C -0.144 4.144 20 C -0.013 4.013 21 C -0.164 4.164 22 C -0.069 4.069 23 O -0.546 6.546 24 Si 0.757 3.243 25 C -0.045 4.045 26 C -0.213 4.213 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.414 0.586 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.200 0.800 36 H 0.172 0.828 37 H 0.223 0.777 38 H 0.106 0.894 39 H 0.049 0.951 40 H 0.155 0.845 41 H 0.133 0.867 42 H 0.386 0.614 43 H -0.306 1.306 44 H -0.281 1.281 45 H 0.155 0.845 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.614 7.484 -2.850 8.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.226 6.226 3 C 0.121 3.879 4 C -0.201 4.201 5 C 0.345 3.655 6 O -0.448 6.448 7 N -0.356 5.356 8 C 0.010 3.990 9 H 0.104 0.896 10 C -0.155 4.155 11 C -0.135 4.135 12 H 0.105 0.895 13 C -0.006 4.006 14 N -0.135 5.135 15 C -0.182 4.182 16 C -0.214 4.214 17 N -0.266 5.266 18 C -0.107 4.107 19 C -0.183 4.183 20 C -0.032 4.032 21 C -0.164 4.164 22 C -0.179 4.179 23 O -0.354 6.354 24 Si 0.663 3.337 25 C -0.062 4.062 26 C -0.232 4.232 27 H 0.090 0.910 28 H 0.124 0.876 29 H 0.093 0.907 30 H 0.252 0.748 31 H 0.103 0.897 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.217 0.783 36 H 0.189 0.811 37 H 0.240 0.760 38 H 0.125 0.875 39 H 0.068 0.932 40 H 0.173 0.827 41 H 0.151 0.849 42 H 0.235 0.765 43 H -0.234 1.234 44 H -0.208 1.208 45 H 0.172 0.828 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.874 7.128 -2.091 7.661 hybrid contribution 0.022 -0.154 -1.863 1.869 sum -1.852 6.974 -3.954 8.228 Atomic orbital electron populations 1.23436 0.76591 1.05405 1.02840 1.86337 1.23152 1.26525 1.86575 1.19457 0.91509 0.85481 0.91467 1.19434 0.91056 0.94127 1.15483 1.18371 0.82975 0.88535 0.75660 1.90817 1.72626 1.30517 1.50848 1.45753 1.04869 1.10219 1.74801 1.22451 0.90777 0.87923 0.97848 0.89561 1.23307 0.92073 1.01738 0.98418 1.22625 0.93086 1.00422 0.97342 0.89516 1.22186 0.95960 0.90594 0.91874 1.45755 1.37205 1.21521 1.09003 1.23151 1.01538 0.91641 1.01911 1.22635 1.05623 1.03305 0.89844 1.70234 1.14100 1.07807 1.34467 1.25410 1.03518 0.99771 0.81996 1.23580 0.95870 1.02021 0.96802 1.21131 1.00852 0.88929 0.92249 1.20165 0.93675 0.95970 1.06625 1.25049 1.04415 0.98413 0.90003 1.86576 1.38370 1.94236 1.16188 0.94174 0.76871 0.74299 0.88351 1.21315 0.94040 0.97845 0.93039 1.21454 1.01699 0.90976 1.09061 0.91004 0.87569 0.90689 0.74758 0.89737 0.86336 0.86704 0.86387 0.78295 0.81113 0.76026 0.87541 0.93166 0.82724 0.84908 0.76450 1.23444 1.20810 0.82831 0.82270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.10 16 2 O -0.31 -2.59 8.57 -68.79 -0.59 -3.18 16 3 C 0.17 0.77 6.70 22.84 0.15 0.92 16 4 C -0.20 -0.70 5.89 -20.01 -0.12 -0.82 16 5 C 0.56 4.04 7.76 86.70 0.67 4.72 16 6 O -0.57 -9.66 14.76 16.91 0.25 -9.41 16 7 N -0.70 0.93 5.31 -443.19 -2.35 -1.43 16 8 C 0.12 -0.19 4.24 45.52 0.19 0.01 16 9 H 0.09 0.44 7.46 -2.39 -0.02 0.42 16 10 C -0.12 1.05 7.39 31.12 0.23 1.28 16 11 C -0.11 0.81 3.96 -10.27 -0.04 0.77 16 12 H 0.09 -0.29 8.14 -2.38 -0.02 -0.31 16 13 C 0.12 -1.05 5.99 86.38 0.52 -0.53 16 14 N -0.45 0.51 2.75 -529.07 -1.46 -0.95 16 15 C -0.05 -0.05 11.58 83.09 0.96 0.91 16 16 C -0.07 -0.48 11.87 83.52 0.99 0.51 16 17 N -0.55 -6.04 11.25 -200.31 -2.25 -8.29 16 18 C 0.18 0.62 12.56 180.26 2.26 2.89 16 19 C -0.14 0.53 7.43 31.12 0.23 0.76 16 20 C -0.01 0.04 9.16 22.52 0.21 0.25 16 21 C -0.16 0.77 5.35 -19.90 -0.11 0.66 16 22 C -0.07 0.43 2.79 71.24 0.20 0.63 16 23 O -0.55 1.79 12.83 -148.98 -1.91 -0.13 16 24 Si 0.76 -4.59 29.87 68.60 2.05 -2.54 16 25 C -0.04 0.22 8.65 22.30 0.19 0.41 16 26 C -0.21 0.44 9.03 22.34 0.20 0.64 16 27 H 0.07 -0.34 7.66 -2.39 -0.02 -0.36 16 28 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.07 -0.38 7.66 -2.39 -0.02 -0.40 16 30 H 0.41 -3.35 6.76 -92.71 -0.63 -3.97 16 31 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H 0.12 -1.65 8.08 -2.39 -0.02 -1.66 16 33 H 0.11 -1.41 8.14 -2.38 -0.02 -1.42 16 34 H 0.12 -1.53 7.85 -2.39 -0.02 -1.54 16 35 H 0.20 -1.09 8.06 -2.91 -0.02 -1.11 16 36 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 37 H 0.22 -0.65 8.06 -2.91 -0.02 -0.68 16 38 H 0.11 -0.78 7.90 -2.39 -0.02 -0.80 16 39 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.16 -1.28 6.40 -2.91 -0.02 -1.30 16 41 H 0.13 -1.16 7.96 -2.39 -0.02 -1.18 16 42 H 0.39 -3.09 8.70 -74.06 -0.64 -3.73 16 43 H -0.31 -0.79 7.11 99.48 0.71 -0.08 16 44 H -0.28 0.69 7.00 99.48 0.70 1.38 16 45 H 0.15 -1.44 4.81 -2.91 -0.01 -1.45 16 46 H 0.16 -1.07 6.30 -2.91 -0.02 -1.09 16 Total: 0.00 -31.72 382.04 1.39 -30.33 By element: Atomic # 1 Polarization: -19.30 SS G_CDS: -0.22 Total: -19.51 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 7.86 Total: 15.10 kcal Atomic # 7 Polarization: -4.60 SS G_CDS: -6.06 Total: -10.66 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -2.25 Total: -12.72 kcal Atomic # 14 Polarization: -4.59 SS G_CDS: 2.05 Total: -2.54 kcal Total: -31.72 1.39 -30.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_12496546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.737 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds