Wall clock time and date at job start Tue Mar 9 2021 13:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.47197 * 2 1 4 4 C 1.50703 * 109.47408 * 119.99853 * 2 1 3 5 5 C 1.37818 * 119.93707 * 15.00348 * 4 2 1 6 6 C 1.39671 * 119.87687 * 179.97438 * 5 4 2 7 7 C 1.47726 * 120.11812 * 179.97438 * 6 5 4 8 8 O 1.21573 * 119.99916 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00147 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27844 * 9 7 6 11 11 H 1.09000 * 112.84813 * 334.38493 * 10 9 7 12 12 C 1.53783 * 113.61758 * 105.58441 * 10 9 7 13 13 C 1.53953 * 87.01967 * 139.94777 * 12 10 9 14 14 H 1.09005 * 113.61350 * 89.20090 * 13 12 10 15 15 C 1.53000 * 113.66852 * 220.06443 * 13 12 10 16 16 N 1.46489 * 109.47233 * 272.56386 * 15 13 12 17 17 C 1.36886 * 126.40071 * 269.70858 * 16 15 13 18 18 C 1.34663 * 106.82042 * 179.84592 * 17 16 15 19 19 N 1.34125 * 108.02004 * 0.42547 * 18 17 16 20 20 C 1.30501 * 109.25853 * 359.73088 * 19 18 17 21 21 C 1.53779 * 113.61166 * 203.19166 * 10 9 7 22 22 C 1.39627 * 119.76367 * 0.25753 * 6 5 4 23 23 C 1.37857 * 119.87864 * 359.46116 * 22 6 5 24 24 C 1.38628 * 120.11887 * 0.54029 * 23 22 6 25 25 F 1.35099 * 119.88005 * 179.72103 * 24 23 22 26 26 H 0.96701 * 114.00409 * 299.99518 * 1 2 3 27 27 H 1.08999 * 109.47200 * 239.99957 * 2 1 3 28 28 H 1.48501 * 109.99807 * 300.00540 * 3 2 1 29 29 H 1.48503 * 109.99542 * 61.31646 * 3 2 1 30 30 H 1.07997 * 120.06185 * 0.02562 * 5 4 2 31 31 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 32 32 H 1.08995 * 113.61864 * 254.52969 * 12 10 9 33 33 H 1.08999 * 113.60888 * 25.43011 * 12 10 9 34 34 H 1.09000 * 109.46768 * 32.56466 * 15 13 12 35 35 H 1.09000 * 109.46908 * 152.56157 * 15 13 12 36 36 H 1.08007 * 126.58588 * 359.97438 * 17 16 15 37 37 H 1.08002 * 125.98973 * 180.12166 * 18 17 16 38 38 H 1.08001 * 125.65354 * 180.02562 * 20 19 18 39 39 H 1.08996 * 113.61592 * 334.56671 * 21 10 9 40 40 H 1.09000 * 113.61393 * 105.38671 * 21 10 9 41 41 H 1.08002 * 120.06009 * 179.74568 * 22 6 5 42 42 H 1.08007 * 119.93827 * 180.25648 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.0731 -1.4946 1.9705 6 6 1.5402 -2.1529 3.1104 7 6 0.6247 -2.9944 3.9079 8 8 -0.5375 -3.1153 3.5721 9 7 1.0778 -3.6281 5.0077 10 6 0.1713 -4.4674 5.7951 11 1 -0.8734 -4.1740 5.6926 12 6 0.4090 -5.9752 5.6077 13 6 0.1668 -6.1199 7.1211 14 1 -0.8793 -6.2799 7.3826 15 6 1.1081 -7.1159 7.8014 16 7 0.5348 -8.4616 7.7228 17 6 -0.2968 -9.0451 8.6403 18 6 -0.5857 -10.2760 8.1769 19 7 0.0595 -10.4433 7.0130 20 6 0.7328 -9.3606 6.7347 21 6 0.6180 -4.6558 7.2545 22 6 2.8741 -2.0079 3.4968 23 6 3.7254 -1.2257 2.7460 24 6 3.2566 -0.5746 1.6155 25 9 4.0938 0.1954 0.8864 26 1 -0.3934 0.4416 0.7651 27 1 1.7923 -0.5138 -0.8900 28 1 1.5613 2.4679 -1.2084 29 1 1.5878 2.4585 1.2243 30 1 0.0414 -1.6007 1.6692 31 1 2.0051 -3.5319 5.2754 32 1 -0.3483 -6.4638 4.9946 33 1 1.4259 -6.2222 5.3027 34 1 2.0753 -7.1030 7.2988 35 1 1.2383 -6.8368 8.8470 36 1 -0.6543 -8.6024 9.5583 37 1 -1.2213 -11.0032 8.6604 38 1 1.3462 -9.2084 5.8589 39 1 1.6921 -4.5416 7.4006 40 1 0.0300 -4.0797 7.9689 41 1 3.2393 -2.5114 4.3797 42 1 4.7585 -1.1162 3.0417 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_12496548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:30 Heat of formation + Delta-G solvation = 13.796207 kcal Electronic energy + Delta-G solvation = -27139.715892 eV Core-core repulsion = 23003.137491 eV Total energy + Delta-G solvation = -4136.578401 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.27622 -42.93437 -41.59117 -40.33981 -39.23936 -37.82872 -35.51204 -34.18396 -32.66691 -31.89574 -30.37827 -28.81677 -27.16468 -26.73440 -25.50177 -23.56327 -23.25705 -22.25770 -21.81426 -21.54018 -20.70428 -19.30836 -18.62184 -18.49590 -17.94349 -17.82146 -17.10221 -17.02296 -16.45487 -16.19257 -16.06654 -15.93168 -15.77002 -15.34555 -15.15017 -15.12923 -14.81710 -14.34870 -14.29671 -14.24440 -14.07955 -13.93360 -13.50299 -13.41351 -13.38812 -12.97542 -12.83828 -12.48405 -12.26550 -12.00323 -11.94932 -11.49576 -11.23879 -11.01788 -10.89606 -10.48697 -10.22038 -10.02255 -9.73825 -9.43493 -4.86245 -0.50230 0.01687 1.15120 1.16585 1.48689 1.59082 1.84707 1.92714 2.05314 2.24557 2.57603 2.95342 3.14549 3.31587 3.37120 3.47751 3.58502 3.66995 3.70785 3.77923 3.89899 3.99436 4.09019 4.10815 4.13186 4.20352 4.40085 4.43466 4.58939 4.62106 4.71376 4.73768 4.78974 4.79882 4.82513 4.89588 4.95740 5.01224 5.03804 5.08601 5.17674 5.36883 5.51175 5.62874 5.84208 6.30501 6.33918 6.43468 7.10297 7.17924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.081 4.081 3 Si 0.747 3.253 4 C -0.164 4.164 5 C -0.042 4.042 6 C -0.155 4.155 7 C 0.557 3.443 8 O -0.583 6.583 9 N -0.696 5.696 10 C 0.114 3.886 11 H 0.086 0.914 12 C -0.146 4.146 13 C -0.117 4.117 14 H 0.084 0.916 15 C 0.114 3.886 16 N -0.453 5.453 17 C -0.048 4.048 18 C -0.068 4.068 19 N -0.548 5.548 20 C 0.176 3.824 21 C -0.114 4.114 22 C -0.044 4.044 23 C -0.141 4.141 24 C 0.118 3.882 25 F -0.101 7.101 26 H 0.387 0.613 27 H 0.133 0.867 28 H -0.291 1.291 29 H -0.284 1.284 30 H 0.131 0.869 31 H 0.419 0.581 32 H 0.047 0.953 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.201 0.799 37 H 0.170 0.830 38 H 0.224 0.776 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.179 0.821 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.510 3.752 6.790 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.189 4.189 3 Si 0.650 3.350 4 C -0.165 4.165 5 C -0.061 4.061 6 C -0.158 4.158 7 C 0.346 3.654 8 O -0.464 6.464 9 N -0.348 5.348 10 C 0.009 3.991 11 H 0.105 0.895 12 C -0.185 4.185 13 C -0.137 4.137 14 H 0.103 0.897 15 C -0.007 4.007 16 N -0.135 5.135 17 C -0.182 4.182 18 C -0.215 4.215 19 N -0.268 5.268 20 C -0.107 4.107 21 C -0.152 4.152 22 C -0.062 4.062 23 C -0.159 4.159 24 C 0.099 3.901 25 F -0.079 7.079 26 H 0.236 0.764 27 H 0.150 0.850 28 H -0.219 1.219 29 H -0.210 1.210 30 H 0.149 0.851 31 H 0.259 0.741 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.218 0.782 37 H 0.188 0.812 38 H 0.240 0.760 39 H 0.142 0.858 40 H 0.104 0.896 41 H 0.196 0.804 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 8.641 3.646 5.543 10.895 hybrid contribution -1.393 0.496 0.498 1.561 sum 7.248 4.142 6.041 10.305 Atomic orbital electron populations 1.86573 1.18037 1.80468 1.50301 1.25085 0.83920 1.11608 0.98336 0.94126 0.91496 0.71839 0.77490 1.20300 0.93681 1.02528 1.00029 1.20875 1.00318 0.92469 0.92444 1.19975 0.95523 1.02373 0.97909 1.18486 0.86807 0.79121 0.81021 1.90807 1.20095 1.64773 1.70753 1.45718 1.14923 1.48154 1.25962 1.22495 0.94783 0.89647 0.92215 0.89543 1.23635 1.03226 0.95542 0.96096 1.22670 1.00126 0.95337 0.95587 0.89714 1.22207 0.97138 0.76606 1.04712 1.45762 1.36046 1.14333 1.17341 1.23152 1.00382 0.95885 0.98762 1.22629 1.05611 0.98155 0.95120 1.70234 1.13076 1.26452 1.16997 1.25412 1.03352 0.85476 0.96465 1.23298 1.04245 0.93748 0.93923 1.21551 0.90093 0.95239 0.99342 1.21487 1.03276 0.97737 0.93436 1.17824 0.86725 0.93401 0.92189 1.91199 1.69437 1.71187 1.76082 0.76389 0.84980 1.21875 1.21024 0.85122 0.74112 0.93369 0.87306 0.86224 0.86634 0.78249 0.81230 0.75988 0.85810 0.89594 0.80386 0.80045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.54 11.64 -148.98 -1.73 -4.27 16 2 C -0.08 -0.09 2.96 71.24 0.21 0.12 16 3 Si 0.75 0.57 29.58 68.60 2.03 2.60 16 4 C -0.16 0.00 5.13 -19.86 -0.10 -0.10 16 5 C -0.04 -0.10 8.78 22.52 0.20 0.10 16 6 C -0.15 0.21 5.87 -20.09 -0.12 0.09 16 7 C 0.56 1.15 7.77 86.75 0.67 1.82 16 8 O -0.58 -7.34 15.96 -3.95 -0.06 -7.41 16 9 N -0.70 4.66 5.31 -443.02 -2.35 2.30 16 10 C 0.11 -0.64 4.21 45.52 0.19 -0.44 16 11 H 0.09 0.11 7.50 -2.39 -0.02 0.10 16 12 C -0.15 0.98 7.45 31.18 0.23 1.21 16 13 C -0.12 1.15 3.96 -10.21 -0.04 1.11 16 14 H 0.08 -0.47 8.14 -2.38 -0.02 -0.49 16 15 C 0.11 -1.32 5.99 86.38 0.52 -0.80 16 16 N -0.45 1.27 2.75 -529.08 -1.46 -0.18 16 17 C -0.05 0.01 11.58 83.08 0.96 0.97 16 18 C -0.07 -0.43 11.87 83.52 0.99 0.57 16 19 N -0.55 -5.52 11.25 -200.31 -2.25 -7.77 16 20 C 0.18 0.38 12.56 180.26 2.26 2.64 16 21 C -0.11 1.47 7.39 31.12 0.23 1.70 16 22 C -0.04 0.42 9.54 22.52 0.21 0.63 16 23 C -0.14 1.28 10.01 22.27 0.22 1.50 16 24 C 0.12 -0.46 6.67 22.47 0.15 -0.31 16 25 F -0.10 0.48 13.70 44.97 0.62 1.09 16 26 H 0.39 -0.22 8.43 -74.06 -0.62 -0.85 16 27 H 0.13 -0.06 7.96 -2.39 -0.02 -0.08 16 28 H -0.29 -2.21 7.11 99.48 0.71 -1.51 16 29 H -0.28 -1.48 7.11 99.48 0.71 -0.77 16 30 H 0.13 0.83 6.66 -2.91 -0.02 0.81 16 31 H 0.42 -6.27 6.74 -92.71 -0.62 -6.90 16 32 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.11 -1.16 7.90 -2.39 -0.02 -1.18 16 34 H 0.12 -1.88 7.85 -2.39 -0.02 -1.90 16 35 H 0.12 -1.70 8.14 -2.39 -0.02 -1.72 16 36 H 0.20 -1.36 8.06 -2.91 -0.02 -1.39 16 37 H 0.17 0.61 8.06 -2.91 -0.02 0.58 16 38 H 0.22 -0.98 8.06 -2.91 -0.02 -1.01 16 39 H 0.12 -2.31 8.07 -2.39 -0.02 -2.33 16 40 H 0.09 -1.05 8.14 -2.39 -0.02 -1.07 16 41 H 0.18 -3.26 6.40 -2.91 -0.02 -3.28 16 42 H 0.18 -2.77 8.06 -2.91 -0.02 -2.80 16 Total: 0.00 -30.07 358.47 1.45 -28.63 By element: Atomic # 1 Polarization: -25.65 SS G_CDS: -0.14 Total: -25.79 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 6.80 Total: 10.81 kcal Atomic # 7 Polarization: 0.41 SS G_CDS: -6.06 Total: -5.65 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -1.80 Total: -11.68 kcal Atomic # 9 Polarization: 0.48 SS G_CDS: 0.62 Total: 1.09 kcal Atomic # 14 Polarization: 0.57 SS G_CDS: 2.03 Total: 2.60 kcal Total: -30.07 1.45 -28.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_12496548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.424 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds