Wall clock time and date at job start Tue Mar 9 2021 13:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86306 * 109.46799 * 2 1 4 4 C 1.50703 * 109.47200 * 119.99699 * 2 1 3 5 5 C 1.34833 * 125.65105 * 65.32614 * 4 2 1 6 6 C 1.40795 * 107.04981 * 180.13580 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.56997 * 6 5 4 8 8 C 1.47569 * 125.94728 * 180.26566 * 7 6 5 9 9 C 1.39919 * 119.95145 * 359.72585 * 8 7 6 10 10 C 1.36433 * 120.27573 * 179.71740 * 9 8 7 11 11 C 1.39880 * 120.18186 * 0.55763 * 10 9 8 12 12 C 1.47296 * 120.04121 * 179.69704 * 11 10 9 13 13 O 1.21620 * 119.99718 * 180.02562 * 12 11 10 14 14 N 1.34771 * 120.00375 * 0.02562 * 12 11 10 15 15 C 1.46502 * 120.00522 * 180.02562 * 14 12 11 16 16 H 1.09005 * 112.84505 * 23.80289 * 15 14 12 17 17 C 1.53774 * 113.61713 * 155.00175 * 15 14 12 18 18 C 1.53780 * 87.08254 * 139.98140 * 17 15 14 19 19 H 1.09005 * 113.61307 * 89.11531 * 18 17 15 20 20 C 1.52998 * 113.61856 * 219.93344 * 18 17 15 21 21 N 1.46498 * 109.47337 * 185.00050 * 20 18 17 22 22 C 1.36880 * 126.39632 * 269.71206 * 21 20 18 23 23 C 1.34664 * 106.82010 * 179.84117 * 22 21 20 24 24 N 1.34131 * 108.01867 * 0.42493 * 23 22 21 25 25 C 1.30497 * 109.25627 * 359.73123 * 24 23 22 26 26 C 1.53778 * 113.61354 * 252.50275 * 15 14 12 27 27 C 1.40397 * 119.91115 * 359.72127 * 11 10 9 28 28 O 1.35679 * 120.14056 * 179.97438 * 27 11 10 29 29 C 1.38279 * 119.72393 * 359.97438 * 27 11 10 30 30 O 1.34236 * 125.65151 * 244.97919 * 4 2 1 31 31 H 0.96706 * 114.00179 * 299.99661 * 1 2 3 32 32 H 1.08993 * 109.47236 * 240.00444 * 2 1 3 33 33 H 1.48500 * 110.00116 * 300.00122 * 3 2 1 34 34 H 1.48498 * 110.00076 * 61.31870 * 3 2 1 35 35 H 1.07995 * 126.47650 * 359.97438 * 5 4 2 36 36 H 1.08002 * 126.63743 * 179.83926 * 6 5 4 37 37 H 1.08005 * 119.86467 * 0.02562 * 9 8 7 38 38 H 1.07995 * 119.90845 * 180.27889 * 10 9 8 39 39 H 0.97010 * 119.99953 * 0.02562 * 14 12 11 40 40 H 1.09004 * 113.61345 * 254.52777 * 17 15 14 41 41 H 1.09005 * 113.61645 * 25.43541 * 17 15 14 42 42 H 1.09001 * 109.46929 * 305.00119 * 20 18 17 43 43 H 1.09005 * 109.46965 * 64.99474 * 20 18 17 44 44 H 1.08002 * 126.59252 * 359.97438 * 22 21 20 45 45 H 1.08003 * 125.99556 * 180.18735 * 23 22 21 46 46 H 1.07996 * 125.65537 * 180.02562 * 25 24 23 47 47 H 1.09002 * 113.61821 * 334.56287 * 26 15 14 48 48 H 1.09000 * 113.61662 * 105.46590 * 26 15 14 49 49 H 0.96700 * 113.99352 * 270.02073 * 28 27 11 50 50 H 1.08003 * 120.09519 * 180.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7621 -2.0192 1.5065 6 6 2.3810 -2.2629 2.7475 7 6 2.9084 -1.0784 3.1616 8 6 3.6580 -0.8542 4.4128 9 6 3.8741 -1.9164 5.2976 10 6 4.5711 -1.7178 6.4535 11 6 5.0648 -0.4472 6.7675 12 6 5.8113 -0.2349 8.0195 13 8 6.2397 0.8702 8.2919 14 7 6.0194 -1.2651 8.8630 15 6 6.7613 -1.0538 10.1085 16 1 6.7339 -0.0180 10.4469 17 6 6.4186 -2.0709 11.2098 18 6 7.9181 -2.0889 11.5504 19 1 8.2085 -1.3362 12.2834 20 6 8.4539 -3.4823 11.8856 21 7 9.8523 -3.3788 12.3096 22 6 10.9539 -3.4530 11.5004 23 6 12.0314 -3.3060 12.2947 24 7 11.5999 -3.1558 13.5558 25 6 10.2957 -3.1984 13.5723 26 6 8.1735 -1.6624 10.0951 27 6 4.8475 0.6254 5.8881 28 8 5.3239 1.8598 6.1883 29 6 4.1460 0.4185 4.7146 30 8 2.6271 -0.1462 2.2303 31 1 -0.3934 0.4417 0.7651 32 1 1.7923 -0.5137 -0.8900 33 1 1.5614 2.4680 -1.2085 34 1 1.5878 2.4586 1.2242 35 1 1.2468 -2.7433 0.8930 36 1 2.4316 -3.2078 3.2679 37 1 3.4918 -2.8987 5.0622 38 1 4.7383 -2.5428 7.1300 39 1 5.6779 -2.1467 8.6455 40 1 5.7953 -1.6607 12.0044 41 1 6.0466 -3.0210 10.8263 42 1 7.8610 -3.9153 12.6914 43 1 8.3877 -4.1190 11.0033 44 1 10.9581 -3.5990 10.4303 45 1 13.0625 -3.3122 11.9733 46 1 9.6739 -3.1044 14.4503 47 1 8.2812 -2.5008 9.4069 48 1 8.9668 -0.9224 9.9898 49 1 4.7071 2.4071 6.6934 50 1 3.9757 1.2392 4.0335 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:40 Heat of formation + Delta-G solvation = 37.724566 kcal Electronic energy + Delta-G solvation = -34897.422083 eV Core-core repulsion = 30053.754844 eV Total energy + Delta-G solvation = -4843.667239 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.156 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.74584 -42.92443 -41.67970 -40.47011 -39.08999 -38.20765 -37.88028 -35.43594 -34.39766 -34.08858 -33.09260 -31.32068 -30.54935 -30.36378 -28.74099 -27.07674 -26.71606 -24.94295 -24.08718 -23.68867 -22.41903 -22.24655 -22.01930 -21.65711 -21.33863 -20.77700 -19.70082 -18.76568 -18.58494 -18.40246 -17.74109 -17.52235 -17.38549 -16.71459 -16.57473 -16.45208 -16.11829 -16.04435 -15.83071 -15.69512 -15.44040 -15.13957 -14.86344 -14.75334 -14.44968 -14.31299 -14.23529 -14.12985 -13.97372 -13.80195 -13.61718 -13.52480 -13.49112 -13.41103 -12.96670 -12.86836 -12.70661 -12.27328 -12.20501 -12.00163 -11.85244 -11.43816 -11.13691 -10.94360 -10.88592 -10.85261 -10.63356 -10.46335 -10.08141 -9.95604 -9.42490 -9.01963 -4.99887 -0.79824 0.14014 0.63800 1.11439 1.17708 1.42670 1.44148 1.68206 1.86807 1.90921 1.94287 2.09861 2.25292 2.63514 3.01158 3.20636 3.35109 3.39620 3.49023 3.60048 3.65441 3.71939 3.80775 3.86418 3.91551 3.99026 4.00732 4.05690 4.18170 4.21697 4.24358 4.36337 4.42238 4.45501 4.61112 4.63467 4.69553 4.71546 4.74174 4.79736 4.80751 4.83040 4.89962 4.97022 5.04889 5.06105 5.09915 5.18944 5.22547 5.38315 5.43196 5.52211 5.56314 5.84917 5.95723 6.30776 6.35153 6.48863 6.67561 7.17834 7.18674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.032 4.032 3 Si 0.759 3.241 4 C -0.052 4.052 5 C -0.181 4.181 6 C -0.171 4.171 7 C 0.004 3.996 8 C 0.025 3.975 9 C -0.109 4.109 10 C -0.049 4.049 11 C -0.180 4.180 12 C 0.555 3.445 13 O -0.568 6.568 14 N -0.700 5.700 15 C 0.115 3.885 16 H 0.088 0.912 17 C -0.114 4.114 18 C -0.118 4.118 19 H 0.086 0.914 20 C 0.114 3.886 21 N -0.452 5.452 22 C -0.045 4.045 23 C -0.069 4.069 24 N -0.548 5.548 25 C 0.173 3.827 26 C -0.145 4.145 27 C 0.158 3.842 28 O -0.496 6.496 29 C -0.154 4.154 30 O -0.178 6.178 31 H 0.390 0.610 32 H 0.157 0.843 33 H -0.281 1.281 34 H -0.296 1.296 35 H 0.167 0.833 36 H 0.184 0.816 37 H 0.171 0.829 38 H 0.176 0.824 39 H 0.417 0.583 40 H 0.086 0.914 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.197 0.803 45 H 0.169 0.831 46 H 0.228 0.772 47 H 0.105 0.895 48 H 0.047 0.953 49 H 0.407 0.593 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.294 -8.452 -1.382 10.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.141 4.141 3 Si 0.664 3.336 4 C -0.102 4.102 5 C -0.200 4.200 6 C -0.190 4.190 7 C -0.045 4.045 8 C 0.024 3.976 9 C -0.127 4.127 10 C -0.067 4.067 11 C -0.183 4.183 12 C 0.343 3.657 13 O -0.447 6.447 14 N -0.352 5.352 15 C 0.010 3.990 16 H 0.106 0.894 17 C -0.153 4.153 18 C -0.137 4.137 19 H 0.104 0.896 20 C -0.007 4.007 21 N -0.134 5.134 22 C -0.179 4.179 23 C -0.215 4.215 24 N -0.267 5.267 25 C -0.109 4.109 26 C -0.184 4.184 27 C 0.111 3.889 28 O -0.309 6.309 29 C -0.173 4.173 30 O -0.075 6.075 31 H 0.240 0.760 32 H 0.175 0.825 33 H -0.207 1.207 34 H -0.222 1.222 35 H 0.185 0.815 36 H 0.201 0.799 37 H 0.189 0.811 38 H 0.194 0.806 39 H 0.256 0.744 40 H 0.105 0.895 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.213 0.787 45 H 0.187 0.813 46 H 0.244 0.756 47 H 0.123 0.877 48 H 0.066 0.934 49 H 0.267 0.733 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.189 -6.925 -1.363 8.760 hybrid contribution -1.739 0.287 -0.074 1.764 sum -6.928 -6.638 -1.437 9.702 Atomic orbital electron populations 1.86642 1.17183 1.80355 1.50042 1.24431 0.83554 1.11831 0.94324 0.93638 0.90662 0.72314 0.77034 1.23152 1.00661 0.94233 0.92147 1.21844 1.04057 0.95655 0.98429 1.22251 1.00797 0.98916 0.96990 1.20605 1.04631 0.87993 0.91293 1.17967 0.95410 0.93898 0.90282 1.21078 0.99294 0.99309 0.93017 1.21189 0.93577 0.95094 0.96846 1.20544 1.05572 0.96138 0.96080 1.18299 0.79151 0.84526 0.83697 1.90828 1.51949 1.25799 1.76155 1.45736 1.56634 1.12169 1.20673 1.22472 0.92057 1.00232 0.84264 0.89427 1.23307 0.94726 1.00067 0.97173 1.22652 0.97277 0.96933 0.96866 0.89554 1.22204 0.77082 0.97304 1.04067 1.45753 1.08097 1.52205 1.07368 1.23071 0.86042 1.09870 0.98900 1.22606 1.00263 1.09355 0.89321 1.70234 1.10982 1.21536 1.23938 1.25511 0.91463 1.04663 0.89306 1.23579 0.96656 1.01223 0.96940 1.18528 0.92304 0.85798 0.92232 1.84734 1.45706 1.23723 1.76776 1.21563 0.99588 0.98164 0.97986 1.83941 1.57959 1.38675 1.26973 0.76049 0.82550 1.20690 1.22241 0.81519 0.79917 0.81142 0.80650 0.74386 0.89514 0.86006 0.86190 0.86718 0.78652 0.81349 0.75574 0.87701 0.93440 0.73275 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.01 12.88 -148.98 -1.92 -1.93 16 2 C -0.03 0.07 2.98 71.24 0.21 0.28 16 3 Si 0.76 -0.74 32.11 68.60 2.20 1.46 16 4 C -0.05 0.00 6.21 24.90 0.15 0.16 16 5 C -0.18 0.27 10.78 22.11 0.24 0.51 16 6 C -0.17 0.52 10.26 22.40 0.23 0.74 16 7 C 0.00 0.00 7.02 24.24 0.17 0.17 16 8 C 0.03 -0.02 5.87 -20.08 -0.12 -0.14 16 9 C -0.11 0.77 9.48 22.26 0.21 0.98 16 10 C -0.05 0.38 9.47 22.25 0.21 0.59 16 11 C -0.18 -0.06 5.89 -19.97 -0.12 -0.18 16 12 C 0.55 1.80 7.75 86.63 0.67 2.47 16 13 O -0.57 -7.34 14.74 16.90 0.25 -7.09 16 14 N -0.70 3.85 5.30 -443.44 -2.35 1.50 16 15 C 0.11 -0.55 4.24 45.51 0.19 -0.36 16 16 H 0.09 0.17 7.46 -2.38 -0.02 0.15 16 17 C -0.11 1.40 7.39 31.12 0.23 1.63 16 18 C -0.12 1.09 3.96 -10.27 -0.04 1.05 16 19 H 0.09 -0.46 8.14 -2.38 -0.02 -0.48 16 20 C 0.11 -1.27 5.99 86.38 0.52 -0.75 16 21 N -0.45 1.14 2.75 -529.08 -1.46 -0.32 16 22 C -0.04 -0.01 11.58 83.09 0.96 0.95 16 23 C -0.07 -0.46 11.87 83.52 0.99 0.54 16 24 N -0.55 -5.57 11.25 -200.31 -2.25 -7.82 16 25 C 0.17 0.38 12.56 180.26 2.26 2.64 16 26 C -0.15 0.84 7.43 31.12 0.23 1.08 16 27 C 0.16 0.65 6.71 22.81 0.15 0.81 16 28 O -0.50 -3.60 11.56 -68.97 -0.80 -4.39 16 29 C -0.15 -0.36 9.65 22.61 0.22 -0.14 16 30 O -0.18 -0.43 8.79 -6.09 -0.05 -0.49 16 31 H 0.39 -1.89 8.70 -74.05 -0.64 -2.53 16 32 H 0.16 -0.95 7.96 -2.39 -0.02 -0.97 16 33 H -0.28 -1.24 7.11 99.48 0.71 -0.53 16 34 H -0.30 -1.64 7.11 99.48 0.71 -0.93 16 35 H 0.17 -0.71 8.06 -2.91 -0.02 -0.74 16 36 H 0.18 -1.73 7.24 -2.91 -0.02 -1.76 16 37 H 0.17 -2.32 6.95 -2.91 -0.02 -2.34 16 38 H 0.18 -2.91 6.37 -2.91 -0.02 -2.93 16 39 H 0.42 -5.60 6.73 -92.70 -0.62 -6.22 16 40 H 0.09 -1.02 8.14 -2.38 -0.02 -1.04 16 41 H 0.12 -2.16 8.08 -2.38 -0.02 -2.18 16 42 H 0.12 -1.78 8.14 -2.39 -0.02 -1.80 16 43 H 0.11 -1.67 7.85 -2.38 -0.02 -1.69 16 44 H 0.20 -1.12 8.06 -2.91 -0.02 -1.15 16 45 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 46 H 0.23 -1.12 8.06 -2.91 -0.02 -1.14 16 47 H 0.10 -0.97 7.90 -2.39 -0.02 -0.99 16 48 H 0.05 0.02 8.14 -2.39 -0.02 0.01 16 49 H 0.41 0.14 9.06 -74.06 -0.67 -0.54 16 50 H 0.14 0.37 7.90 -2.91 -0.02 0.35 16 Total: 0.00 -35.16 427.71 0.33 -34.83 By element: Atomic # 1 Polarization: -27.89 SS G_CDS: -0.87 Total: -28.76 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 7.58 Total: 13.01 kcal Atomic # 7 Polarization: -0.58 SS G_CDS: -6.06 Total: -6.64 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -2.52 Total: -13.90 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: 2.20 Total: 1.46 kcal Total: -35.16 0.33 -34.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.554 kcal (2) G-P(sol) polarization free energy of solvation -35.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds