Wall clock time and date at job start Tue Mar 9 2021 13:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38973 * 119.95815 * 2 1 4 4 O 1.35710 * 119.91280 * 359.97438 * 3 2 1 5 5 C 1.39016 * 120.17838 * 179.97438 * 3 2 1 6 6 C 1.50697 * 119.95917 * 180.02562 * 5 3 2 7 7 O 1.42894 * 109.47529 * 74.99208 * 6 5 3 8 8 Si 1.86303 * 109.47438 * 194.99768 * 6 5 3 9 9 C 1.37681 * 120.08807 * 359.77716 * 5 3 2 10 10 C 1.39759 * 119.90926 * 0.45239 * 9 5 3 11 11 C 1.47606 * 120.08544 * 179.80801 * 10 9 5 12 12 O 1.21588 * 120.00151 * 359.72137 * 11 10 9 13 13 N 1.34778 * 119.99605 * 179.72452 * 11 10 9 14 14 C 1.46502 * 119.99671 * 180.02562 * 13 11 10 15 15 H 1.08998 * 112.90669 * 336.24268 * 14 13 11 16 16 C 1.53778 * 113.61780 * 107.50275 * 14 13 11 17 17 C 1.53778 * 87.08449 * 139.97851 * 16 14 13 18 18 H 1.09000 * 113.61263 * 89.11673 * 17 16 14 19 19 C 1.52997 * 113.61422 * 220.01977 * 17 16 14 20 20 N 1.46499 * 109.47084 * 272.49417 * 19 17 16 21 21 C 1.36883 * 126.39618 * 89.99848 * 20 19 17 22 22 C 1.34670 * 106.81976 * 180.02562 * 21 20 19 23 23 N 1.34131 * 108.01720 * 0.02562 * 22 21 20 24 24 C 1.30499 * 109.25456 * 359.72314 * 23 22 21 25 25 C 1.53784 * 87.08081 * 334.56700 * 17 16 14 26 26 C 1.37724 * 119.95202 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.46786 * 270.02430 * 1 2 3 28 28 H 1.09001 * 109.47039 * 30.02514 * 1 2 3 29 29 H 1.09000 * 109.46723 * 150.02410 * 1 2 3 30 30 H 0.96703 * 113.99567 * 90.00143 * 4 3 2 31 31 H 1.09004 * 109.46811 * 314.99658 * 6 5 3 32 32 H 0.96700 * 114.00577 * 180.02562 * 7 6 5 33 33 H 1.48497 * 109.99723 * 299.99927 * 8 6 5 34 34 H 1.48497 * 109.99811 * 61.31340 * 8 6 5 35 35 H 1.08004 * 120.04841 * 180.23135 * 9 5 3 36 36 H 0.97000 * 120.00419 * 359.97438 * 13 11 10 37 37 H 1.08999 * 113.61111 * 254.52914 * 16 14 13 38 38 H 1.08999 * 113.61280 * 25.34297 * 16 14 13 39 39 H 1.09004 * 109.47170 * 32.49387 * 19 17 16 40 40 H 1.08995 * 109.47328 * 152.49879 * 19 17 16 41 41 H 1.07998 * 126.59475 * 0.04022 * 21 20 19 42 42 H 1.07997 * 125.98961 * 180.02562 * 22 21 20 43 43 H 1.08000 * 125.64519 * 180.28911 * 24 23 22 44 44 H 1.09004 * 113.61451 * 270.88641 * 25 17 16 45 45 H 1.08994 * 113.61477 * 139.97943 * 25 17 16 46 46 H 1.07991 * 120.05274 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2040 0.0000 4 8 1.5198 2.3778 -0.0005 5 6 3.5912 1.2094 0.0005 6 6 4.3387 2.5179 0.0011 7 8 4.2716 3.1043 1.3025 8 14 6.1201 2.2157 -0.4528 9 6 4.2860 0.0208 0.0057 10 6 3.5918 -1.1922 0.0008 11 6 4.3328 -2.4688 0.0021 12 8 5.5487 -2.4660 0.0022 13 7 3.6616 -3.6375 0.0030 14 6 4.3970 -4.9046 0.0048 15 1 5.4050 -4.8107 -0.3992 16 6 4.3391 -5.6487 1.3493 17 6 4.1913 -6.9453 0.5359 18 1 5.1431 -7.4093 0.2772 19 6 3.1902 -7.9345 1.1360 20 7 3.8729 -8.7899 2.1099 21 6 4.0167 -8.5422 3.4484 22 6 4.7046 -9.5785 3.9647 23 7 4.9739 -10.4353 2.9685 24 6 4.4739 -9.9721 1.8556 25 6 3.6020 -6.0791 -0.5898 26 6 2.1947 -1.1933 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.3221 2.7181 0.8828 31 1 3.8882 3.1940 -0.7257 32 1 4.7323 3.9513 1.3765 33 1 6.7456 1.2953 0.5305 34 1 6.2052 1.6354 -1.8170 35 1 5.3660 0.0257 0.0099 36 1 2.6916 -3.6398 0.0032 37 1 5.2668 -5.5939 1.9189 38 1 3.4607 -5.4037 1.9464 39 1 2.3901 -7.3855 1.6325 40 1 2.7692 -8.5518 0.3425 41 1 3.6491 -7.6814 3.9870 42 1 4.9894 -9.6985 4.9995 43 1 4.5331 -10.4535 0.8907 44 1 2.5214 -5.9529 -0.5235 45 1 3.9347 -6.3718 -1.5857 46 1 1.6548 -2.1286 0.0005 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_13287732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:09 Heat of formation + Delta-G solvation = 8.380686 kcal Electronic energy + Delta-G solvation = -29192.597030 eV Core-core repulsion = 25051.017959 eV Total energy + Delta-G solvation = -4141.579071 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.96370 -41.90854 -40.93171 -39.61728 -37.78639 -37.59759 -35.60187 -34.33302 -34.03721 -31.89791 -30.42917 -28.80835 -28.08700 -26.93083 -26.80515 -25.49433 -23.56010 -22.28876 -22.09933 -21.82708 -21.62861 -20.69689 -19.60021 -18.71808 -18.50266 -18.41917 -17.90017 -17.03806 -16.74145 -16.54533 -16.21598 -16.13500 -15.82127 -15.49057 -15.22598 -15.17554 -15.04043 -14.86157 -14.40669 -14.26621 -14.17942 -14.01481 -13.77593 -13.60876 -13.54664 -13.48339 -13.09046 -12.97742 -12.89082 -12.66279 -12.37856 -12.22364 -12.02890 -11.56313 -11.52832 -11.27401 -10.93429 -10.51992 -10.39692 -10.31463 -10.10052 -9.77438 -9.46051 -5.11965 -0.55135 -0.08822 1.13888 1.17770 1.41688 1.51871 1.85065 1.88300 1.96532 2.21925 2.38285 3.02716 3.20411 3.31292 3.41090 3.42793 3.50093 3.64004 3.70484 3.76007 3.84095 3.88216 4.00454 4.06040 4.12494 4.17129 4.28563 4.32393 4.39820 4.52418 4.57328 4.61798 4.64089 4.67713 4.73448 4.78146 4.78675 4.88177 4.90470 4.95078 4.97356 5.07886 5.12770 5.22089 5.33894 5.42712 5.50292 5.81366 6.29573 6.31694 6.63607 6.81636 6.96163 7.15161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.116 4.116 3 C 0.160 3.840 4 O -0.490 6.490 5 C -0.125 4.125 6 C -0.058 4.058 7 O -0.557 6.557 8 Si 0.763 3.237 9 C -0.084 4.084 10 C -0.155 4.155 11 C 0.557 3.443 12 O -0.588 6.588 13 N -0.693 5.693 14 C 0.109 3.891 15 H 0.087 0.913 16 C -0.144 4.144 17 C -0.116 4.116 18 H 0.087 0.913 19 C 0.115 3.885 20 N -0.453 5.453 21 C -0.045 4.045 22 C -0.068 4.068 23 N -0.547 5.547 24 C 0.173 3.827 25 C -0.114 4.114 26 C -0.052 4.052 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.415 0.585 31 H 0.097 0.903 32 H 0.406 0.594 33 H -0.303 1.303 34 H -0.299 1.299 35 H 0.110 0.890 36 H 0.419 0.581 37 H 0.048 0.952 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.196 0.804 42 H 0.170 0.830 43 H 0.228 0.772 44 H 0.123 0.877 45 H 0.087 0.913 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.633 4.922 -2.022 11.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.116 4.116 3 C 0.114 3.886 4 O -0.304 6.304 5 C -0.126 4.126 6 C -0.169 4.169 7 O -0.367 6.367 8 Si 0.672 3.328 9 C -0.103 4.103 10 C -0.158 4.158 11 C 0.346 3.654 12 O -0.470 6.470 13 N -0.345 5.345 14 C 0.004 3.996 15 H 0.105 0.895 16 C -0.183 4.183 17 C -0.135 4.135 18 H 0.106 0.894 19 C -0.006 4.006 20 N -0.135 5.135 21 C -0.179 4.179 22 C -0.215 4.215 23 N -0.266 5.266 24 C -0.109 4.109 25 C -0.152 4.152 26 C -0.070 4.070 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.276 0.724 31 H 0.115 0.885 32 H 0.257 0.743 33 H -0.232 1.232 34 H -0.226 1.226 35 H 0.128 0.872 36 H 0.258 0.742 37 H 0.067 0.933 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.213 0.787 42 H 0.187 0.813 43 H 0.244 0.756 44 H 0.141 0.859 45 H 0.106 0.894 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.161 3.117 -2.747 9.158 hybrid contribution -0.292 0.559 0.572 0.852 sum -8.454 3.677 -2.174 9.472 Atomic orbital electron populations 1.20798 0.87342 1.04584 1.03948 1.20557 0.98831 0.91431 1.00825 1.18388 0.88199 0.86475 0.95555 1.84605 1.75133 1.35242 1.35466 1.19864 0.94266 0.94101 1.04374 1.24414 1.09016 0.93670 0.89821 1.86380 1.79815 1.42311 1.28194 0.94768 0.76704 0.85840 0.75488 1.20978 0.99272 0.92270 0.97739 1.19837 0.94917 0.92262 1.08775 1.18452 0.86701 0.84974 0.75312 1.90788 1.15835 1.88262 1.52102 1.45707 1.10919 1.04240 1.73595 1.22583 0.97222 0.81516 0.98249 0.89518 1.23581 1.02922 0.95139 0.96643 1.22640 0.99760 0.93894 0.97247 0.89428 1.22191 0.94241 0.92539 0.91620 1.45751 1.41737 1.17775 1.08231 1.23070 1.07101 1.03291 0.84461 1.22617 1.05247 0.93963 0.99686 1.70238 1.24328 1.31787 1.00226 1.25520 0.98369 0.86792 1.00241 1.23315 1.01862 0.91515 0.98507 1.21418 0.90934 0.99576 0.95110 0.89392 0.90785 0.89140 0.72405 0.88505 0.74262 1.23193 1.22642 0.87219 0.74154 0.93292 0.87525 0.86686 0.86077 0.78681 0.81289 0.75555 0.85872 0.89414 0.80969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.84 9.78 71.24 0.70 1.54 16 2 C -0.12 0.22 5.89 -19.81 -0.12 0.10 16 3 C 0.16 0.31 6.66 22.63 0.15 0.46 16 4 O -0.49 0.63 11.84 -90.31 -1.07 -0.44 16 5 C -0.13 -0.74 5.30 -19.81 -0.10 -0.85 16 6 C -0.06 -0.08 2.36 71.23 0.17 0.09 16 7 O -0.56 0.49 12.86 -148.98 -1.92 -1.42 16 8 Si 0.76 2.32 30.20 68.60 2.07 4.39 16 9 C -0.08 -0.83 8.20 22.51 0.18 -0.65 16 10 C -0.15 -0.86 5.88 -20.08 -0.12 -0.98 16 11 C 0.56 4.27 7.76 86.72 0.67 4.95 16 12 O -0.59 -10.65 15.94 -3.99 -0.06 -10.72 16 13 N -0.69 1.66 5.30 -443.12 -2.35 -0.69 16 14 C 0.11 -0.28 4.24 45.52 0.19 -0.09 16 15 H 0.09 0.38 7.46 -2.39 -0.02 0.37 16 16 C -0.14 0.65 7.43 31.12 0.23 0.88 16 17 C -0.12 0.95 3.96 -10.27 -0.04 0.90 16 18 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 19 C 0.12 -1.19 5.99 86.38 0.52 -0.67 16 20 N -0.45 0.86 2.75 -529.08 -1.46 -0.59 16 21 C -0.05 -0.04 11.58 83.09 0.96 0.92 16 22 C -0.07 -0.48 11.87 83.52 0.99 0.51 16 23 N -0.55 -5.78 11.25 -200.32 -2.25 -8.04 16 24 C 0.17 0.47 12.56 180.26 2.26 2.73 16 25 C -0.11 1.21 7.39 31.12 0.23 1.44 16 26 C -0.05 0.13 9.18 22.51 0.21 0.34 16 27 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 28 H 0.07 -0.43 7.52 -2.39 -0.02 -0.45 16 29 H 0.09 -0.99 8.08 -2.39 -0.02 -1.01 16 30 H 0.41 -3.45 9.06 -74.06 -0.67 -4.12 16 31 H 0.10 -0.16 7.82 -2.38 -0.02 -0.18 16 32 H 0.41 -4.47 8.74 -74.06 -0.65 -5.12 16 33 H -0.30 -3.76 6.74 99.48 0.67 -3.09 16 34 H -0.30 -3.06 7.11 99.48 0.71 -2.35 16 35 H 0.11 1.64 4.47 -2.91 -0.01 1.62 16 36 H 0.42 -4.41 6.75 -92.71 -0.63 -5.04 16 37 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.11 -0.87 7.90 -2.39 -0.02 -0.89 16 39 H 0.11 -1.59 7.85 -2.38 -0.02 -1.61 16 40 H 0.12 -1.72 8.14 -2.39 -0.02 -1.74 16 41 H 0.20 -1.01 8.06 -2.91 -0.02 -1.04 16 42 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 43 H 0.23 -1.00 8.06 -2.91 -0.02 -1.03 16 44 H 0.12 -2.01 8.08 -2.39 -0.02 -2.03 16 45 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 46 H 0.17 -2.01 6.39 -2.91 -0.02 -2.03 16 Total: 0.00 -36.16 385.04 -0.84 -37.00 By element: Atomic # 1 Polarization: -30.23 SS G_CDS: -0.90 Total: -31.13 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 7.09 Total: 11.63 kcal Atomic # 7 Polarization: -3.26 SS G_CDS: -6.06 Total: -9.32 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -3.05 Total: -12.58 kcal Atomic # 14 Polarization: 2.32 SS G_CDS: 2.07 Total: 4.39 kcal Total: -36.16 -0.84 -37.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_13287732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.381 kcal (2) G-P(sol) polarization free energy of solvation -36.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds