Wall clock time and date at job start Tue Mar 9 2021 13:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86297 * 109.46850 * 2 1 4 4 C 1.50703 * 109.47158 * 119.99999 * 2 1 3 5 5 C 1.34852 * 125.89687 * 217.32798 * 4 2 1 6 6 C 1.40939 * 107.46703 * 179.97438 * 5 4 2 7 7 C 1.34853 * 107.46814 * 0.25792 * 6 5 4 8 8 N 1.36566 * 125.89979 * 37.29961 * 4 2 1 9 9 C 1.40199 * 125.67099 * 359.97438 * 8 4 2 10 10 C 1.38828 * 120.06631 * 235.27869 * 9 8 4 11 11 C 1.38124 * 119.92905 * 179.78940 * 10 9 8 12 12 C 1.38273 * 120.06735 * 0.49347 * 11 10 9 13 13 C 1.50700 * 119.93337 * 179.76447 * 12 11 10 14 14 C 1.50695 * 109.47300 * 269.97115 * 13 12 11 15 15 O 1.21284 * 120.00073 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99960 * 179.97438 * 14 13 12 17 17 C 1.46507 * 119.99754 * 180.02562 * 16 14 13 18 18 H 1.08999 * 112.84910 * 336.19843 * 17 16 14 19 19 C 1.53778 * 113.61520 * 107.50611 * 17 16 14 20 20 C 1.53775 * 87.08376 * 139.98005 * 19 17 16 21 21 H 1.08997 * 113.61480 * 89.11313 * 20 19 17 22 22 C 1.53003 * 113.61413 * 220.02043 * 20 19 17 23 23 N 1.46496 * 109.46903 * 272.49365 * 22 20 19 24 24 C 1.36883 * 126.40184 * 269.71360 * 23 22 20 25 25 C 1.34670 * 106.81994 * 179.84111 * 24 23 22 26 26 N 1.34123 * 108.01762 * 0.42572 * 25 24 23 27 27 C 1.30499 * 109.25886 * 359.72815 * 26 25 24 28 28 C 1.53777 * 113.61379 * 204.99987 * 17 16 14 29 29 C 1.38280 * 120.13546 * 359.73532 * 12 11 10 30 30 C 1.38124 * 120.06149 * 0.03078 * 29 12 11 31 31 H 0.96699 * 113.99981 * 305.50586 * 1 2 3 32 32 H 1.08999 * 109.47007 * 240.00380 * 2 1 3 33 33 H 1.48498 * 110.00075 * 178.68231 * 3 2 1 34 34 H 1.48500 * 109.99971 * 300.00042 * 3 2 1 35 35 H 1.07996 * 126.26613 * 0.02562 * 5 4 2 36 36 H 1.07997 * 126.26518 * 179.97438 * 6 5 4 37 37 H 1.07999 * 125.89823 * 179.70038 * 7 6 5 38 38 H 1.07999 * 120.03136 * 0.02562 * 10 9 8 39 39 H 1.07996 * 119.96379 * 180.24859 * 11 10 9 40 40 H 1.09004 * 109.47480 * 29.97829 * 13 12 11 41 41 H 1.09000 * 109.47085 * 149.97035 * 13 12 11 42 42 H 0.96997 * 120.00481 * 0.02562 * 16 14 13 43 43 H 1.09004 * 113.61311 * 254.53371 * 19 17 16 44 44 H 1.09003 * 113.61610 * 25.42672 * 19 17 16 45 45 H 1.08992 * 109.47471 * 32.49604 * 22 20 19 46 46 H 1.09005 * 109.46777 * 152.49830 * 22 20 19 47 47 H 1.08002 * 126.58778 * 359.97438 * 24 23 22 48 48 H 1.08004 * 125.98965 * 180.18895 * 25 24 23 49 49 H 1.08008 * 125.65032 * 180.02562 * 27 26 25 50 50 H 1.09000 * 113.61680 * 334.57585 * 28 17 16 51 51 H 1.09009 * 113.61288 * 105.47451 * 28 17 16 52 52 H 1.07996 * 119.97060 * 179.97438 * 29 12 11 53 53 H 1.07999 * 120.03119 * 179.97438 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 3.0139 -0.3647 1.9565 6 6 3.1252 -1.2877 3.0158 7 6 2.1100 -2.1670 2.8949 8 7 1.3687 -1.8151 1.8032 9 6 0.2231 -2.4803 1.3440 10 6 -0.8549 -2.6780 2.1962 11 6 -1.9838 -3.3299 1.7396 12 6 -2.0370 -3.7942 0.4382 13 6 -3.2681 -4.5096 -0.0552 14 6 -3.1260 -5.9881 0.1995 15 8 -2.1238 -6.4185 0.7300 16 7 -4.1129 -6.8320 -0.1612 17 6 -3.9749 -8.2693 0.0869 18 1 -2.9354 -8.5868 0.1686 19 6 -4.8703 -8.7867 1.2250 20 6 -5.1256 -10.0280 0.3541 21 1 -4.4010 -10.8273 0.5100 22 6 -6.5737 -10.5201 0.3978 23 7 -6.7408 -11.4470 1.5198 24 6 -6.5721 -12.8049 1.4838 25 6 -6.8205 -13.2615 2.7261 26 7 -7.1415 -12.2122 3.4973 27 6 -7.0959 -11.1220 2.7816 28 6 -4.8127 -9.1416 -0.8628 29 6 -0.9630 -3.6029 -0.4115 30 6 0.1668 -2.9475 0.0379 31 1 -0.3933 0.5131 0.7191 32 1 1.7923 -0.5138 -0.8900 33 1 3.5345 1.7704 0.0321 34 1 1.5614 2.4679 -1.2085 35 1 3.6742 0.4676 1.7623 36 1 3.8871 -1.2928 3.7812 37 1 1.9156 -3.0037 3.5495 38 1 -0.8122 -2.3192 3.2140 39 1 -2.8242 -3.4805 2.4009 40 1 -4.1438 -4.1324 0.4730 41 1 -3.3858 -4.3348 -1.1246 42 1 -4.9146 -6.4878 -0.5852 43 1 -4.3264 -9.0027 2.1446 44 1 -5.7601 -8.1793 1.3912 45 1 -7.2428 -9.6694 0.5265 46 1 -6.8118 -11.0318 -0.5348 47 1 -6.2913 -13.3961 0.6247 48 1 -6.7735 -14.2925 3.0446 49 1 -7.3068 -10.1249 3.1392 50 1 -5.6866 -8.6312 -1.2677 51 1 -4.2222 -9.6443 -1.6289 52 1 -1.0072 -3.9670 -1.4273 53 1 1.0054 -2.7987 -0.6261 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_13287746.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:12 Heat of formation + Delta-G solvation = 115.480843 kcal Electronic energy + Delta-G solvation = -34828.282971 eV Core-core repulsion = 30248.850733 eV Total energy + Delta-G solvation = -4579.432238 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.94416 -42.70656 -41.30047 -40.16170 -39.18136 -37.69677 -35.39438 -34.86842 -33.95639 -32.16162 -31.78802 -31.06820 -30.39026 -28.96065 -27.68409 -26.72062 -26.07078 -24.38100 -23.97656 -23.07397 -22.26613 -21.80772 -21.51532 -21.46079 -20.69977 -20.54180 -19.26290 -18.49852 -18.04950 -17.55280 -17.32989 -17.07366 -16.55205 -16.36068 -16.19061 -15.90829 -15.81738 -15.71196 -15.38191 -15.32541 -14.98015 -14.80949 -14.65812 -14.51153 -14.43664 -14.29156 -14.21853 -14.07025 -13.97599 -13.51359 -13.42495 -13.36640 -13.23872 -13.09872 -12.84636 -12.63087 -12.22298 -12.17714 -12.03945 -11.96704 -11.95357 -11.48520 -11.00150 -10.90726 -10.75458 -10.49125 -10.25169 -10.03264 -9.99949 -9.44535 -9.24171 -9.11125 -4.96920 0.00314 0.34195 1.06291 1.15608 1.31952 1.61994 1.63746 1.86040 1.92839 1.94324 2.08024 2.19503 2.23812 2.72631 3.38526 3.38940 3.48149 3.61772 3.65870 3.70537 3.73448 3.77768 3.87176 3.88853 3.99037 4.08055 4.11503 4.12164 4.22986 4.23221 4.31487 4.39977 4.43995 4.48056 4.50374 4.60726 4.60960 4.62907 4.71210 4.73526 4.78731 4.81335 4.84074 4.95288 4.96651 5.02745 5.17127 5.19343 5.21252 5.23564 5.34299 5.36220 5.49205 5.58329 5.78827 5.83078 5.90704 6.15535 6.32823 6.47803 6.57747 6.62754 7.16820 7.28973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.053 4.053 3 Si 0.806 3.194 4 C -0.017 4.017 5 C -0.205 4.205 6 C -0.198 4.198 7 C -0.020 4.020 8 N -0.395 5.395 9 C 0.118 3.882 10 C -0.121 4.121 11 C -0.095 4.095 12 C -0.067 4.067 13 C -0.097 4.097 14 C 0.512 3.488 15 O -0.584 6.584 16 N -0.706 5.706 17 C 0.115 3.885 18 H 0.082 0.918 19 C -0.144 4.144 20 C -0.119 4.119 21 H 0.082 0.918 22 C 0.115 3.885 23 N -0.453 5.453 24 C -0.050 4.050 25 C -0.067 4.067 26 N -0.548 5.548 27 C 0.176 3.824 28 C -0.116 4.116 29 C -0.099 4.099 30 C -0.109 4.109 31 H 0.389 0.611 32 H 0.101 0.899 33 H -0.283 1.283 34 H -0.287 1.287 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.173 0.827 38 H 0.135 0.865 39 H 0.147 0.853 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.421 0.579 43 H 0.046 0.954 44 H 0.109 0.891 45 H 0.119 0.881 46 H 0.113 0.887 47 H 0.200 0.800 48 H 0.171 0.829 49 H 0.225 0.775 50 H 0.121 0.879 51 H 0.081 0.919 52 H 0.137 0.863 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.915 3.679 -5.439 9.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.162 4.162 3 Si 0.709 3.291 4 C -0.127 4.127 5 C -0.229 4.229 6 C -0.222 4.222 7 C -0.147 4.147 8 N -0.068 5.068 9 C 0.028 3.972 10 C -0.140 4.140 11 C -0.114 4.114 12 C -0.067 4.067 13 C -0.137 4.137 14 C 0.300 3.700 15 O -0.464 6.464 16 N -0.358 5.358 17 C 0.010 3.990 18 H 0.100 0.900 19 C -0.182 4.182 20 C -0.139 4.139 21 H 0.101 0.899 22 C -0.006 4.006 23 N -0.135 5.135 24 C -0.183 4.183 25 C -0.214 4.214 26 N -0.267 5.267 27 C -0.106 4.106 28 C -0.155 4.155 29 C -0.117 4.117 30 C -0.129 4.129 31 H 0.238 0.762 32 H 0.118 0.882 33 H -0.209 1.209 34 H -0.215 1.215 35 H 0.169 0.831 36 H 0.172 0.828 37 H 0.190 0.810 38 H 0.153 0.847 39 H 0.165 0.835 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.259 0.741 43 H 0.065 0.935 44 H 0.127 0.873 45 H 0.138 0.862 46 H 0.132 0.868 47 H 0.216 0.784 48 H 0.188 0.812 49 H 0.241 0.759 50 H 0.139 0.861 51 H 0.099 0.901 52 H 0.155 0.845 53 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.112 3.492 -5.415 8.881 hybrid contribution 0.715 -0.899 -0.774 1.385 sum -5.397 2.593 -6.189 8.611 Atomic orbital electron populations 1.86479 1.16927 1.76510 1.55350 1.24999 0.85469 1.11349 0.94423 0.93028 0.77992 0.73851 0.84242 1.21293 0.98598 0.92399 1.00443 1.20980 0.99727 1.03852 0.98347 1.21175 1.01266 0.97716 1.02082 1.22306 0.95596 1.03565 0.93261 1.41555 1.20556 1.21874 1.22791 1.17734 0.86675 0.98447 0.94316 1.21150 0.92127 1.00699 1.00019 1.21108 0.98046 0.96837 0.95374 1.19592 0.95664 0.97529 0.93948 1.20771 0.97652 0.89191 1.06047 1.21063 0.82392 0.89563 0.76980 1.90756 1.31753 1.79558 1.44309 1.45853 1.21249 1.06518 1.62209 1.22362 0.99351 0.80001 0.97310 0.90004 1.23576 1.00752 0.96744 0.97174 1.22645 0.96336 0.96673 0.98214 0.89926 1.22197 0.96807 0.93493 0.88120 1.45757 1.49701 1.07198 1.10814 1.23150 1.09533 0.84238 1.01416 1.22623 1.08125 0.99093 0.91533 1.70234 1.21942 0.99640 1.34898 1.25423 1.03616 1.00317 0.81292 1.23298 1.00688 0.95760 0.95729 1.21027 0.92291 0.97858 1.00554 1.20929 0.99011 0.98335 0.94589 0.76206 0.88163 1.20905 1.21473 0.83088 0.82804 0.80968 0.84705 0.83520 0.84549 0.85059 0.74120 0.93465 0.87288 0.86244 0.86836 0.78351 0.81201 0.75913 0.86067 0.90072 0.84523 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.95 10.88 -148.98 -1.62 -2.57 16 2 C -0.05 -0.12 2.49 71.24 0.18 0.06 16 3 Si 0.81 -0.86 30.96 68.60 2.12 1.26 16 4 C -0.02 -0.09 6.12 41.04 0.25 0.16 16 5 C -0.20 -1.06 9.40 22.15 0.21 -0.85 16 6 C -0.20 -1.06 10.86 22.15 0.24 -0.81 16 7 C -0.02 -0.12 11.20 83.18 0.93 0.81 16 8 N -0.39 -2.65 2.84 -333.40 -0.95 -3.60 16 9 C 0.12 0.73 4.69 38.09 0.18 0.91 16 10 C -0.12 -0.40 9.76 22.38 0.22 -0.18 16 11 C -0.10 -0.08 9.69 22.25 0.22 0.14 16 12 C -0.07 -0.02 4.38 -19.85 -0.09 -0.11 16 13 C -0.10 0.69 5.83 29.10 0.17 0.86 16 14 C 0.51 -0.53 7.82 87.66 0.69 0.16 16 15 O -0.58 -6.16 15.63 -3.04 -0.05 -6.21 16 16 N -0.71 5.48 5.35 -440.04 -2.36 3.12 16 17 C 0.12 -0.62 4.24 45.51 0.19 -0.43 16 18 H 0.08 0.17 7.46 -2.39 -0.02 0.16 16 19 C -0.14 0.95 7.43 31.12 0.23 1.18 16 20 C -0.12 1.07 3.96 -10.27 -0.04 1.03 16 21 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 22 C 0.11 -1.24 5.99 86.38 0.52 -0.72 16 23 N -0.45 1.08 2.75 -529.06 -1.46 -0.37 16 24 C -0.05 -0.01 11.58 83.09 0.96 0.95 16 25 C -0.07 -0.43 11.87 83.52 0.99 0.56 16 26 N -0.55 -5.55 11.25 -200.30 -2.25 -7.80 16 27 C 0.18 0.40 12.56 180.26 2.26 2.67 16 28 C -0.12 1.37 7.39 31.12 0.23 1.60 16 29 C -0.10 -0.31 9.69 22.25 0.22 -0.10 16 30 C -0.11 -0.70 8.48 22.38 0.19 -0.51 16 31 H 0.39 -1.83 8.60 -74.06 -0.64 -2.46 16 32 H 0.10 0.38 7.96 -2.39 -0.02 0.36 16 33 H -0.28 -1.03 6.85 99.48 0.68 -0.35 16 34 H -0.29 -1.29 7.11 99.48 0.71 -0.58 16 35 H 0.15 0.37 6.45 -2.91 -0.02 0.35 16 36 H 0.15 0.27 8.06 -2.91 -0.02 0.25 16 37 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 38 H 0.14 0.14 8.06 -2.91 -0.02 0.12 16 39 H 0.15 -0.55 8.06 -2.91 -0.02 -0.58 16 40 H 0.14 -1.76 8.08 -2.39 -0.02 -1.78 16 41 H 0.13 -1.56 8.08 -2.39 -0.02 -1.58 16 42 H 0.42 -6.48 8.73 -92.71 -0.81 -7.29 16 43 H 0.05 -0.01 8.14 -2.38 -0.02 -0.03 16 44 H 0.11 -1.16 7.90 -2.39 -0.02 -1.18 16 45 H 0.12 -1.78 7.84 -2.39 -0.02 -1.80 16 46 H 0.11 -1.55 8.14 -2.38 -0.02 -1.57 16 47 H 0.20 -1.24 8.06 -2.91 -0.02 -1.26 16 48 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 49 H 0.22 -1.00 8.06 -2.91 -0.02 -1.02 16 50 H 0.12 -2.07 8.08 -2.39 -0.02 -2.09 16 51 H 0.08 -0.86 8.14 -2.38 -0.02 -0.88 16 52 H 0.14 -0.03 8.06 -2.91 -0.02 -0.05 16 53 H 0.11 0.82 8.06 -2.91 -0.02 0.80 16 Total: 0.00 -32.52 443.34 1.89 -30.63 By element: Atomic # 1 Polarization: -21.31 SS G_CDS: -0.50 Total: -21.81 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 8.94 Total: 7.36 kcal Atomic # 7 Polarization: -1.64 SS G_CDS: -7.01 Total: -8.65 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -1.67 Total: -8.78 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: 2.12 Total: 1.26 kcal Total: -32.52 1.89 -30.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_13287746.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.108 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds