Wall clock time and date at job start Tue Mar 9 2021 13:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 110.99801 * 2 1 4 4 C 1.39040 * 110.99813 * 123.95362 * 2 1 3 5 5 C 1.39203 * 119.92942 * 120.00222 * 4 2 1 6 6 C 1.50699 * 119.96371 * 0.02562 * 5 4 2 7 7 O 1.42897 * 109.47397 * 74.98070 * 6 5 4 8 8 Si 1.86302 * 109.46775 * 194.97604 * 6 5 4 9 9 C 1.37632 * 120.06657 * 179.97438 * 5 4 2 10 10 C 1.39773 * 119.93443 * 359.97438 * 9 5 4 11 11 C 1.47520 * 120.07127 * 179.97438 * 10 9 5 12 12 O 1.21603 * 119.99920 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00124 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27945 * 13 11 10 15 15 H 1.09000 * 112.84813 * 334.38493 * 14 13 11 16 16 C 1.53783 * 113.61758 * 105.58441 * 14 13 11 17 17 C 1.53953 * 87.01967 * 139.94777 * 16 14 13 18 18 H 1.09005 * 113.61350 * 89.20090 * 17 16 14 19 19 C 1.53000 * 113.66852 * 220.06443 * 17 16 14 20 20 N 1.46489 * 109.47233 * 272.56386 * 19 17 16 21 21 C 1.36886 * 126.40071 * 269.70858 * 20 19 17 22 22 C 1.34663 * 106.82042 * 179.84592 * 21 20 19 23 23 N 1.34125 * 108.02004 * 0.42547 * 22 21 20 24 24 C 1.30501 * 109.25853 * 359.73088 * 23 22 21 25 25 C 1.53779 * 113.61166 * 203.19166 * 14 13 11 26 26 C 1.39816 * 119.86065 * 0.27736 * 10 9 5 27 27 C 1.37590 * 119.92807 * 359.46370 * 26 10 9 28 28 H 1.09000 * 109.47300 * 296.04760 * 1 2 3 29 29 H 1.09006 * 109.47339 * 56.04717 * 1 2 3 30 30 H 1.08995 * 109.47141 * 176.04002 * 1 2 3 31 31 H 1.08993 * 109.47056 * 183.95068 * 3 2 1 32 32 H 1.08994 * 109.47159 * 303.95631 * 3 2 1 33 33 H 1.09003 * 109.47030 * 63.95182 * 3 2 1 34 34 H 1.08997 * 109.47105 * 314.96832 * 6 5 4 35 35 H 0.96705 * 113.99068 * 299.99631 * 7 6 5 36 36 H 1.48502 * 109.99921 * 59.99766 * 8 6 5 37 37 H 1.48501 * 109.99959 * 181.31505 * 8 6 5 38 38 H 1.07999 * 120.03219 * 180.02562 * 9 5 4 39 39 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 40 40 H 1.08995 * 113.61864 * 254.52969 * 16 14 13 41 41 H 1.08999 * 113.60888 * 25.43011 * 16 14 13 42 42 H 1.09000 * 109.46768 * 32.56466 * 19 17 16 43 43 H 1.09000 * 109.46908 * 152.56157 * 19 17 16 44 44 H 1.08007 * 126.58588 * 359.97438 * 21 20 19 45 45 H 1.08002 * 125.98973 * 180.12166 * 22 21 20 46 46 H 1.08001 * 125.65354 * 180.02562 * 24 23 22 47 47 H 1.08996 * 113.61592 * 334.56671 * 25 14 13 48 48 H 1.09000 * 113.61393 * 105.38671 * 25 14 13 49 49 H 1.08001 * 120.03659 * 179.72158 * 26 10 9 50 50 H 1.08004 * 119.96347 * 180.22790 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9673 -0.7250 1.0767 5 6 2.7793 -1.8330 0.8518 6 6 3.1175 -2.2445 -0.5579 7 8 4.0865 -1.3437 -1.0977 8 14 3.8129 -3.9729 -0.5503 9 6 3.2745 -2.5524 1.9155 10 6 2.9616 -2.1691 3.2228 11 6 3.4903 -2.9383 4.3652 12 8 4.1994 -3.9067 4.1701 13 7 3.1873 -2.5678 5.6251 14 6 3.7173 -3.3281 6.7596 15 1 3.9446 -4.3635 6.5061 16 6 4.8568 -2.6114 7.5031 17 6 4.2203 -3.1243 8.8077 18 1 4.5857 -4.1039 9.1161 19 6 4.2369 -2.0994 9.9435 20 7 5.4980 -2.2080 10.6808 21 6 5.7375 -3.0046 11.7679 22 6 7.0192 -2.7995 12.1266 23 7 7.5453 -1.8952 11.2873 24 6 6.6399 -1.5363 10.4186 25 6 2.8862 -3.1767 8.0446 26 6 2.1414 -1.0589 3.4453 27 6 1.6539 -0.3406 2.3778 28 1 -0.3634 0.4513 0.9233 29 1 -0.3634 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0710 31 1 3.0827 1.3433 -0.0708 32 1 1.5898 1.9163 -0.8524 33 1 1.7043 1.8724 0.9233 34 1 2.2161 -2.2183 -1.1702 35 1 3.7916 -0.4233 -1.1321 36 1 2.8146 -4.9195 0.0089 37 1 4.1800 -4.3787 -1.9308 38 1 3.9048 -3.4117 1.7403 39 1 2.6219 -1.7951 5.7807 40 1 5.8420 -3.0322 7.3020 41 1 4.8300 -1.5265 7.4013 42 1 4.1437 -1.0958 9.5286 43 1 3.4034 -2.2921 10.6190 44 1 5.0342 -3.6712 12.2450 45 1 7.5320 -3.2757 12.9492 46 1 6.7807 -0.8210 9.6218 47 1 2.3197 -2.2467 8.0912 48 1 2.2816 -4.0528 8.2793 49 1 1.8942 -0.7629 4.4541 50 1 1.0233 0.5193 2.5491 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_13422196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:31 Heat of formation + Delta-G solvation = 71.371376 kcal Electronic energy + Delta-G solvation = -31180.356428 eV Core-core repulsion = 26983.689881 eV Total energy + Delta-G solvation = -4196.666547 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.92335 -41.79401 -40.88263 -39.50451 -37.70501 -37.30753 -35.48127 -34.13236 -32.70194 -31.32244 -30.36344 -28.78787 -28.59206 -26.93591 -26.72375 -26.29764 -24.19907 -23.13217 -22.78583 -22.24434 -21.72015 -21.30765 -20.60719 -19.08816 -18.49721 -18.00289 -17.82720 -17.45004 -16.78776 -16.46289 -16.38247 -16.01035 -15.93154 -15.88620 -15.42961 -15.30257 -15.18564 -15.08769 -14.80077 -14.58233 -14.30439 -14.19418 -14.05874 -13.95122 -13.52987 -13.49059 -13.39530 -13.08631 -13.07348 -12.86454 -12.73345 -12.63299 -12.24702 -12.21895 -11.95463 -11.47220 -11.41377 -11.28532 -11.02074 -10.88465 -10.47314 -10.17890 -10.09394 -9.78184 -9.62355 -9.42339 -4.94464 -0.41117 0.14648 1.17689 1.30846 1.51612 1.65506 1.84085 1.93644 2.08710 2.25759 2.61953 2.72463 3.38254 3.48586 3.51159 3.60700 3.70394 3.72373 3.80281 3.89223 3.91059 4.02333 4.10088 4.11335 4.14106 4.18411 4.21844 4.34498 4.39479 4.42914 4.46818 4.57416 4.63128 4.64646 4.71012 4.72753 4.77498 4.81119 4.83861 4.93464 4.97473 4.97832 5.01667 5.05251 5.12442 5.19866 5.20964 5.38040 5.50299 5.56612 5.75982 5.85321 6.19702 6.34860 6.46287 6.62174 7.13522 7.19049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.529 5.529 3 C 0.023 3.977 4 C 0.125 3.875 5 C -0.113 4.113 6 C -0.057 4.057 7 O -0.544 6.544 8 Si 0.770 3.230 9 C -0.061 4.061 10 C -0.147 4.147 11 C 0.557 3.443 12 O -0.577 6.577 13 N -0.698 5.698 14 C 0.114 3.886 15 H 0.089 0.911 16 C -0.145 4.145 17 C -0.117 4.117 18 H 0.086 0.914 19 C 0.115 3.885 20 N -0.453 5.453 21 C -0.048 4.048 22 C -0.068 4.068 23 N -0.548 5.548 24 C 0.176 3.824 25 C -0.115 4.115 26 C -0.056 4.056 27 C -0.152 4.152 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.373 0.627 36 H -0.274 1.274 37 H -0.287 1.287 38 H 0.134 0.866 39 H 0.417 0.583 40 H 0.050 0.950 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.200 0.800 45 H 0.171 0.829 46 H 0.224 0.776 47 H 0.121 0.879 48 H 0.085 0.915 49 H 0.165 0.835 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.676 6.566 2.729 12.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.251 5.251 3 C -0.123 4.123 4 C 0.031 3.969 5 C -0.115 4.115 6 C -0.167 4.167 7 O -0.351 6.351 8 Si 0.674 3.326 9 C -0.080 4.080 10 C -0.150 4.150 11 C 0.345 3.655 12 O -0.458 6.458 13 N -0.350 5.350 14 C 0.009 3.991 15 H 0.108 0.892 16 C -0.184 4.184 17 C -0.137 4.137 18 H 0.104 0.896 19 C -0.007 4.007 20 N -0.135 5.135 21 C -0.182 4.182 22 C -0.215 4.215 23 N -0.267 5.267 24 C -0.107 4.107 25 C -0.154 4.154 26 C -0.075 4.075 27 C -0.172 4.172 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.223 0.777 36 H -0.200 1.200 37 H -0.214 1.214 38 H 0.152 0.848 39 H 0.256 0.744 40 H 0.069 0.931 41 H 0.125 0.875 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.217 0.783 45 H 0.188 0.812 46 H 0.240 0.760 47 H 0.139 0.861 48 H 0.104 0.896 49 H 0.183 0.817 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.132 4.633 1.776 9.526 hybrid contribution -2.048 1.021 0.127 2.292 sum -10.180 5.653 1.902 11.799 Atomic orbital electron populations 1.22521 0.84405 1.02737 1.02420 1.59436 1.09806 1.15416 1.40427 1.22589 1.01147 0.86078 1.02455 1.18970 0.94488 0.93386 0.90080 1.20175 0.99094 0.96423 0.95786 1.25114 0.96082 1.04643 0.90837 1.86702 1.41715 1.21784 1.84943 0.92273 0.87578 0.71419 0.81370 1.21078 0.96953 0.98440 0.91555 1.19898 1.03210 0.99109 0.92772 1.18436 0.79599 0.83414 0.84035 1.90805 1.39445 1.29529 1.86003 1.45734 1.52154 1.32864 1.04222 1.22504 0.95900 0.96315 0.84364 0.89243 1.23623 0.97966 1.01960 0.94859 1.22669 0.98308 0.99386 0.93303 0.89567 1.22196 0.83154 1.01588 0.93719 1.45757 1.12446 1.31768 1.23508 1.23148 0.99554 1.01962 0.93534 1.22628 0.94138 1.01760 1.02952 1.70236 1.32883 1.16019 1.07564 1.25410 0.81955 1.01403 1.01898 1.23298 0.95546 1.05168 0.91376 1.21468 0.93300 0.91881 1.00885 1.21836 1.01765 1.01497 0.92074 0.93506 0.89529 0.91951 0.90892 0.89413 0.93720 0.90248 0.77714 1.20020 1.21391 0.84826 0.74392 0.93076 0.87501 0.86358 0.86727 0.78283 0.81211 0.75999 0.86125 0.89623 0.81740 0.82959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.14 9.34 127.69 1.19 1.05 16 2 N -0.53 1.86 3.70 -745.11 -2.76 -0.90 16 3 C 0.02 -0.16 9.09 127.69 1.16 1.00 16 4 C 0.13 -0.18 4.66 38.47 0.18 -0.01 16 5 C -0.11 -0.29 5.28 -19.78 -0.10 -0.39 16 6 C -0.06 -0.23 2.29 71.24 0.16 -0.07 16 7 O -0.54 -2.66 12.65 -148.98 -1.89 -4.54 16 8 Si 0.77 4.34 30.17 68.60 2.07 6.41 16 9 C -0.06 -0.24 8.19 22.50 0.18 -0.06 16 10 C -0.15 -0.08 5.88 -20.08 -0.12 -0.19 16 11 C 0.56 1.67 7.76 86.69 0.67 2.34 16 12 O -0.58 -7.12 15.96 -4.04 -0.06 -7.19 16 13 N -0.70 3.85 5.31 -443.20 -2.35 1.50 16 14 C 0.11 -0.58 4.21 45.52 0.19 -0.39 16 15 H 0.09 0.12 7.50 -2.39 -0.02 0.11 16 16 C -0.15 0.93 7.45 31.18 0.23 1.16 16 17 C -0.12 1.10 3.96 -10.21 -0.04 1.06 16 18 H 0.09 -0.47 8.14 -2.38 -0.02 -0.49 16 19 C 0.11 -1.27 5.99 86.38 0.52 -0.75 16 20 N -0.45 1.17 2.75 -529.08 -1.46 -0.29 16 21 C -0.05 0.00 11.58 83.08 0.96 0.97 16 22 C -0.07 -0.43 11.87 83.52 0.99 0.56 16 23 N -0.55 -5.54 11.25 -200.31 -2.25 -7.79 16 24 C 0.18 0.40 12.56 180.26 2.26 2.67 16 25 C -0.12 1.40 7.39 31.12 0.23 1.63 16 26 C -0.06 0.36 9.53 22.50 0.21 0.58 16 27 C -0.15 0.86 8.53 22.36 0.19 1.05 16 28 H 0.05 -0.37 7.10 -2.39 -0.02 -0.39 16 29 H 0.09 -0.62 8.12 -2.38 -0.02 -0.64 16 30 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.07 -0.47 7.41 -2.39 -0.02 -0.49 16 32 H 0.09 -0.74 8.12 -2.39 -0.02 -0.76 16 33 H 0.04 -0.38 7.32 -2.39 -0.02 -0.39 16 34 H 0.08 0.31 7.78 -2.39 -0.02 0.30 16 35 H 0.37 0.09 7.47 -74.05 -0.55 -0.46 16 36 H -0.27 -2.50 7.11 99.48 0.71 -1.80 16 37 H -0.29 -3.19 7.11 99.48 0.71 -2.49 16 38 H 0.13 0.73 4.70 -2.91 -0.01 0.72 16 39 H 0.42 -5.44 6.73 -92.71 -0.62 -6.06 16 40 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.11 -1.07 7.90 -2.39 -0.02 -1.09 16 42 H 0.12 -1.78 7.85 -2.39 -0.02 -1.80 16 43 H 0.11 -1.62 8.14 -2.39 -0.02 -1.64 16 44 H 0.20 -1.32 8.06 -2.91 -0.02 -1.35 16 45 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 46 H 0.22 -0.94 8.06 -2.91 -0.02 -0.97 16 47 H 0.12 -2.11 8.07 -2.39 -0.02 -2.13 16 48 H 0.09 -0.98 8.14 -2.39 -0.02 -1.00 16 49 H 0.17 -2.39 6.39 -2.91 -0.02 -2.41 16 50 H 0.15 -1.54 6.99 -2.91 -0.02 -1.56 16 Total: 0.00 -27.28 405.89 0.22 -27.07 By element: Atomic # 1 Polarization: -26.32 SS G_CDS: -0.17 Total: -26.48 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 9.08 Total: 12.21 kcal Atomic # 7 Polarization: 1.35 SS G_CDS: -8.82 Total: -7.48 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -1.95 Total: -11.73 kcal Atomic # 14 Polarization: 4.34 SS G_CDS: 2.07 Total: 6.41 kcal Total: -27.28 0.22 -27.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_13422196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.439 kcal (2) G-P(sol) polarization free energy of solvation -27.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds