Wall clock time and date at job start Tue Mar 9 2021 13:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86300 * 109.47170 * 2 1 4 4 C 1.50700 * 109.46990 * 119.99891 * 2 1 3 5 5 C 1.34852 * 125.89235 * 245.02430 * 4 2 1 6 6 C 1.40892 * 107.42272 * 179.97438 * 5 4 2 7 7 C 1.34852 * 107.41044 * 0.02562 * 6 5 4 8 8 C 1.50709 * 125.88631 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.46803 * 85.02393 * 8 7 6 10 10 O 1.21281 * 119.99967 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99719 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99904 * 180.02562 * 11 9 8 13 13 H 1.08994 * 112.84922 * 336.20616 * 12 11 9 14 14 C 1.53957 * 113.74035 * 107.40781 * 12 11 9 15 15 C 1.53783 * 87.01875 * 139.94464 * 14 12 11 16 16 H 1.08990 * 113.61571 * 89.22675 * 15 14 12 17 17 C 1.53000 * 113.61182 * 220.05000 * 15 14 12 18 18 N 1.46499 * 109.46840 * 274.13267 * 17 15 14 19 19 C 1.36887 * 126.39508 * 90.00703 * 18 17 15 20 20 C 1.34665 * 106.81674 * 180.02562 * 19 18 17 21 21 N 1.34126 * 108.02295 * 359.97438 * 20 19 18 22 22 C 1.30505 * 109.25525 * 359.72658 * 21 20 19 23 23 C 1.53778 * 113.61233 * 205.00475 * 12 11 9 24 24 N 1.36338 * 125.89389 * 65.30640 * 4 2 1 25 25 H 0.96700 * 114.00384 * 299.99918 * 1 2 3 26 26 H 1.08998 * 109.47433 * 239.99545 * 2 1 3 27 27 H 1.48501 * 109.99990 * 178.68213 * 3 2 1 28 28 H 1.48501 * 109.99792 * 299.99735 * 3 2 1 29 29 H 1.08010 * 126.28760 * 359.96225 * 5 4 2 30 30 H 1.07994 * 126.29503 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.46851 * 325.02662 * 8 7 6 32 32 H 1.08995 * 109.46565 * 205.02441 * 8 7 6 33 33 H 0.97002 * 119.99980 * 0.02562 * 11 9 8 34 34 H 1.09003 * 113.61309 * 25.42314 * 14 12 11 35 35 H 1.09000 * 113.66774 * 254.47065 * 14 12 11 36 36 H 1.09002 * 109.47398 * 34.13594 * 17 15 14 37 37 H 1.09001 * 109.47194 * 154.13774 * 17 15 14 38 38 H 1.08001 * 126.59007 * 0.02665 * 19 18 17 39 39 H 1.08000 * 125.99175 * 179.97438 * 20 19 18 40 40 H 1.08000 * 125.64864 * 180.28771 * 22 21 20 41 41 H 1.09000 * 113.61215 * 105.39106 * 23 12 11 42 42 H 1.09002 * 113.61764 * 334.48286 * 23 12 11 43 43 H 0.97005 * 125.63489 * 0.02678 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 2.6296 -0.1486 2.2380 6 6 2.8969 -1.1602 3.1815 7 6 2.3520 -2.3018 2.7143 8 6 2.3929 -3.6445 3.3976 9 6 1.2606 -3.7390 4.3875 10 8 0.4954 -2.8080 4.5243 11 7 1.0976 -4.8586 5.1200 12 6 -0.0035 -4.9507 6.0819 13 1 -0.3529 -3.9752 6.4200 14 6 -1.1391 -5.8898 5.6361 15 6 -1.2119 -6.3643 7.0970 16 1 -1.8913 -5.7763 7.7138 17 6 -1.4320 -7.8715 7.2416 18 7 -2.8665 -8.1631 7.1853 19 6 -3.5956 -8.4394 6.0602 20 6 -4.8653 -8.6444 6.4593 21 7 -4.9103 -8.4978 7.7918 22 6 -3.7154 -8.2155 8.2342 23 6 0.2610 -5.9416 7.2278 24 7 1.7626 -2.0331 1.5146 25 1 -0.3934 0.4417 0.7650 26 1 1.7923 -0.5139 -0.8899 27 1 3.5345 1.7703 0.0321 28 1 1.5615 2.4678 -1.2085 29 1 2.9293 0.8867 2.3086 30 1 3.4384 -1.0429 4.1085 31 1 3.3428 -3.7574 3.9202 32 1 2.2917 -4.4341 2.6531 33 1 1.7094 -5.6033 5.0103 34 1 -0.8170 -6.6650 4.9407 35 1 -2.0346 -5.3657 5.3021 36 1 -0.9231 -8.3925 6.4305 37 1 -1.0302 -8.2073 8.1976 38 1 -3.2240 -8.4845 5.0471 39 1 -5.7010 -8.8847 5.8188 40 1 -3.4501 -8.0483 9.2677 41 1 0.4940 -5.4592 8.1771 42 1 0.9665 -6.7309 6.9685 43 1 1.2981 -2.6763 0.9565 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14468608_14644196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:46 Heat of formation + Delta-G solvation = 69.955340 kcal Electronic energy + Delta-G solvation = -25305.597523 eV Core-core repulsion = 21548.170951 eV Total energy + Delta-G solvation = -3757.426572 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.95751 -42.32076 -41.16701 -39.52842 -37.65369 -35.46883 -34.12176 -32.99201 -31.88385 -30.41056 -29.64788 -28.64561 -27.02334 -25.45214 -24.08022 -22.24230 -22.07206 -21.65960 -21.33394 -21.19397 -20.75249 -18.93000 -18.53349 -18.18647 -17.52404 -16.88855 -16.62021 -16.40986 -16.24113 -15.86835 -15.36434 -15.18420 -15.07926 -14.84092 -14.57940 -14.49172 -14.19706 -14.16634 -14.07631 -13.85593 -13.82189 -13.65061 -13.60424 -13.14647 -12.78029 -12.47389 -12.17319 -12.02430 -11.91278 -11.69542 -10.94319 -10.83350 -10.59681 -10.50377 -10.17095 -9.73901 -9.40880 -8.92690 -4.95373 1.12093 1.15570 1.28479 1.54014 1.70177 1.78076 1.90424 1.95419 2.24380 2.33401 2.48215 3.10027 3.20278 3.42886 3.47479 3.49221 3.57590 3.78300 3.82844 3.83318 3.85239 3.94533 3.95764 4.00201 4.13430 4.29286 4.34785 4.40017 4.47518 4.51530 4.56451 4.58253 4.69825 4.77584 4.80154 4.82365 5.00388 5.29476 5.32981 5.33040 5.36626 5.85209 6.03452 6.17515 6.25825 6.33625 6.55266 6.63456 7.13703 7.20836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.050 4.050 3 Si 0.719 3.281 4 C -0.010 4.010 5 C -0.187 4.187 6 C -0.173 4.173 7 C 0.034 3.966 8 C -0.072 4.072 9 C 0.512 3.488 10 O -0.520 6.520 11 N -0.724 5.724 12 C 0.126 3.874 13 H 0.117 0.883 14 C -0.146 4.146 15 C -0.126 4.126 16 H 0.103 0.897 17 C 0.117 3.883 18 N -0.458 5.458 19 C -0.055 4.055 20 C -0.030 4.030 21 N -0.495 5.495 22 C 0.180 3.820 23 C -0.136 4.136 24 N -0.536 5.536 25 H 0.383 0.617 26 H 0.109 0.891 27 H -0.255 1.255 28 H -0.256 1.256 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.401 0.599 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.171 0.829 39 H 0.169 0.831 40 H 0.203 0.797 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.878 -2.479 1.287 6.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.160 4.160 3 Si 0.619 3.381 4 C -0.123 4.123 5 C -0.212 4.212 6 C -0.197 4.197 7 C -0.079 4.079 8 C -0.113 4.113 9 C 0.298 3.702 10 O -0.394 6.394 11 N -0.376 5.376 12 C 0.021 3.979 13 H 0.135 0.865 14 C -0.185 4.185 15 C -0.146 4.146 16 H 0.121 0.879 17 C -0.006 4.006 18 N -0.141 5.141 19 C -0.187 4.187 20 C -0.178 4.178 21 N -0.213 5.213 22 C -0.102 4.102 23 C -0.175 4.175 24 N -0.130 5.130 25 H 0.231 0.769 26 H 0.126 0.874 27 H -0.179 1.179 28 H -0.180 1.180 29 H 0.160 0.840 30 H 0.154 0.846 31 H 0.135 0.865 32 H 0.117 0.883 33 H 0.236 0.764 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.188 0.812 39 H 0.186 0.814 40 H 0.220 0.780 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 5.261 -1.646 0.786 5.568 hybrid contribution 0.878 -1.405 -0.911 1.891 sum 6.139 -3.050 -0.125 6.856 Atomic orbital electron populations 1.86467 1.17294 1.81880 1.49559 1.24828 0.85060 1.10694 0.95445 0.93971 0.80857 0.76616 0.86626 1.20856 1.07109 0.84359 1.00005 1.20652 1.05582 0.99510 0.95459 1.20587 1.06558 0.91691 1.00886 1.19466 1.03841 0.95850 0.88783 1.20139 0.99208 0.94463 0.97489 1.20653 0.85965 0.82192 0.81410 1.90773 1.45025 1.37290 1.66312 1.45974 1.32152 1.18081 1.41395 1.22463 0.87020 0.99507 0.88926 0.86486 1.23582 0.99685 0.99469 0.95771 1.22791 0.98020 0.95028 0.98718 0.87891 1.21905 0.78238 0.95765 1.04711 1.45568 1.09216 1.51765 1.07545 1.22710 0.93291 1.10475 0.92246 1.22353 0.96276 1.07260 0.91912 1.70321 1.21387 1.18614 1.10972 1.25046 0.85275 1.05309 0.94606 1.23358 0.95659 0.98927 0.99544 1.41797 1.44291 1.09116 1.17816 0.76929 0.87393 1.17906 1.18049 0.84047 0.84578 0.86473 0.88297 0.76438 0.89575 0.90654 0.88908 0.88440 0.81177 0.81419 0.78013 0.89860 0.89041 0.75163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.65 12.88 -35.23 -0.45 -1.10 16 2 C -0.05 -0.02 3.08 36.01 0.11 0.09 16 3 Si 0.72 -0.39 30.60 -169.99 -5.20 -5.59 16 4 C -0.01 -0.01 6.50 -81.79 -0.53 -0.55 16 5 C -0.19 -0.32 9.37 -39.78 -0.37 -0.69 16 6 C -0.17 -0.33 10.77 -39.78 -0.43 -0.76 16 7 C 0.03 0.03 5.66 -81.79 -0.46 -0.43 16 8 C -0.07 0.17 6.24 -29.03 -0.18 -0.01 16 9 C 0.51 -0.07 7.82 -10.99 -0.09 -0.16 16 10 O -0.52 -2.45 15.63 5.56 0.09 -2.37 16 11 N -0.72 2.26 5.36 -52.93 -0.28 1.98 16 12 C 0.13 -0.32 4.24 -67.03 -0.28 -0.60 16 13 H 0.12 0.00 7.46 -51.93 -0.39 -0.39 16 14 C -0.15 0.42 7.45 -25.82 -0.19 0.22 16 15 C -0.13 0.50 3.96 -89.80 -0.36 0.14 16 16 H 0.10 -0.27 8.14 -51.93 -0.42 -0.70 16 17 C 0.12 -0.48 5.97 -4.04 -0.02 -0.51 16 18 N -0.46 0.32 2.75 -118.57 -0.33 0.00 16 19 C -0.05 -0.02 11.58 -16.56 -0.19 -0.21 16 20 C -0.03 -0.08 11.87 -17.81 -0.21 -0.29 16 21 N -0.50 -2.19 11.25 -14.67 -0.17 -2.35 16 22 C 0.18 0.20 12.56 -90.37 -1.14 -0.93 16 23 C -0.14 0.67 7.40 -25.92 -0.19 0.48 16 24 N -0.54 -0.54 6.07 -5.44 -0.03 -0.57 16 25 H 0.38 -0.74 8.70 45.56 0.40 -0.34 16 26 H 0.11 0.05 7.96 -51.93 -0.41 -0.36 16 27 H -0.25 -0.45 7.11 56.52 0.40 -0.05 16 28 H -0.26 -0.59 7.11 56.52 0.40 -0.19 16 29 H 0.14 -0.03 6.24 -52.48 -0.33 -0.35 16 30 H 0.14 0.10 8.06 -52.49 -0.42 -0.33 16 31 H 0.12 -0.53 8.14 -51.93 -0.42 -0.95 16 32 H 0.10 -0.45 8.14 -51.93 -0.42 -0.88 16 33 H 0.40 -2.45 8.73 -40.82 -0.36 -2.81 16 34 H 0.09 -0.32 7.92 -51.93 -0.41 -0.73 16 35 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 36 H 0.09 -0.48 7.88 -51.93 -0.41 -0.89 16 37 H 0.10 -0.53 8.14 -51.93 -0.42 -0.95 16 38 H 0.17 -0.38 8.06 -52.49 -0.42 -0.80 16 39 H 0.17 0.16 8.06 -52.49 -0.42 -0.26 16 40 H 0.20 -0.43 8.06 -52.49 -0.42 -0.85 16 41 H 0.08 -0.39 8.14 -51.93 -0.42 -0.81 16 42 H 0.09 -0.59 8.08 -51.93 -0.42 -1.01 16 43 H 0.41 -0.24 8.96 -40.82 -0.37 -0.61 16 LS Contribution 366.23 15.07 5.52 5.52 Total: 0.00 -11.91 366.23 -11.51 -23.43 By element: Atomic # 1 Polarization: -8.61 SS G_CDS: -6.12 Total: -14.73 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -4.54 Total: -4.20 kcal Atomic # 7 Polarization: -0.14 SS G_CDS: -0.81 Total: -0.95 kcal Atomic # 8 Polarization: -3.10 SS G_CDS: -0.37 Total: -3.47 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: -5.20 Total: -5.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -11.91 -11.51 -23.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_14644196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.382 kcal (2) G-P(sol) polarization free energy of solvation -11.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds