Wall clock time and date at job start Tue Mar 9 2021 13:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86300 * 109.47170 * 2 1 4 4 C 1.50700 * 109.46990 * 119.99891 * 2 1 3 5 5 C 1.34852 * 125.89235 * 245.02430 * 4 2 1 6 6 C 1.40892 * 107.42272 * 179.97438 * 5 4 2 7 7 C 1.34852 * 107.41044 * 0.02562 * 6 5 4 8 8 C 1.50709 * 125.88631 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.46803 * 85.02393 * 8 7 6 10 10 O 1.21281 * 119.99967 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99719 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99904 * 180.02562 * 11 9 8 13 13 H 1.08994 * 112.84922 * 336.20616 * 12 11 9 14 14 C 1.53957 * 113.74035 * 107.40781 * 12 11 9 15 15 C 1.53783 * 87.01875 * 139.94464 * 14 12 11 16 16 H 1.08990 * 113.61571 * 89.22675 * 15 14 12 17 17 C 1.53000 * 113.61182 * 220.05000 * 15 14 12 18 18 N 1.46499 * 109.46840 * 274.13267 * 17 15 14 19 19 C 1.36887 * 126.39508 * 90.00703 * 18 17 15 20 20 C 1.34665 * 106.81674 * 180.02562 * 19 18 17 21 21 N 1.34126 * 108.02295 * 359.97438 * 20 19 18 22 22 C 1.30505 * 109.25525 * 359.72658 * 21 20 19 23 23 C 1.53778 * 113.61233 * 205.00475 * 12 11 9 24 24 N 1.36338 * 125.89389 * 65.30640 * 4 2 1 25 25 H 0.96700 * 114.00384 * 299.99918 * 1 2 3 26 26 H 1.08998 * 109.47433 * 239.99545 * 2 1 3 27 27 H 1.48501 * 109.99990 * 178.68213 * 3 2 1 28 28 H 1.48501 * 109.99792 * 299.99735 * 3 2 1 29 29 H 1.08010 * 126.28760 * 359.96225 * 5 4 2 30 30 H 1.07994 * 126.29503 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.46851 * 325.02662 * 8 7 6 32 32 H 1.08995 * 109.46565 * 205.02441 * 8 7 6 33 33 H 0.97002 * 119.99980 * 0.02562 * 11 9 8 34 34 H 1.09003 * 113.61309 * 25.42314 * 14 12 11 35 35 H 1.09000 * 113.66774 * 254.47065 * 14 12 11 36 36 H 1.09002 * 109.47398 * 34.13594 * 17 15 14 37 37 H 1.09001 * 109.47194 * 154.13774 * 17 15 14 38 38 H 1.08001 * 126.59007 * 0.02665 * 19 18 17 39 39 H 1.08000 * 125.99175 * 179.97438 * 20 19 18 40 40 H 1.08000 * 125.64864 * 180.28771 * 22 21 20 41 41 H 1.09000 * 113.61215 * 105.39106 * 23 12 11 42 42 H 1.09002 * 113.61764 * 334.48286 * 23 12 11 43 43 H 0.97005 * 125.63489 * 0.02678 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 2.6296 -0.1486 2.2380 6 6 2.8969 -1.1602 3.1815 7 6 2.3520 -2.3018 2.7143 8 6 2.3929 -3.6445 3.3976 9 6 1.2606 -3.7390 4.3875 10 8 0.4954 -2.8080 4.5243 11 7 1.0976 -4.8586 5.1200 12 6 -0.0035 -4.9507 6.0819 13 1 -0.3529 -3.9752 6.4200 14 6 -1.1391 -5.8898 5.6361 15 6 -1.2119 -6.3643 7.0970 16 1 -1.8913 -5.7763 7.7138 17 6 -1.4320 -7.8715 7.2416 18 7 -2.8665 -8.1631 7.1853 19 6 -3.5956 -8.4394 6.0602 20 6 -4.8653 -8.6444 6.4593 21 7 -4.9103 -8.4978 7.7918 22 6 -3.7154 -8.2155 8.2342 23 6 0.2610 -5.9416 7.2278 24 7 1.7626 -2.0331 1.5146 25 1 -0.3934 0.4417 0.7650 26 1 1.7923 -0.5139 -0.8899 27 1 3.5345 1.7703 0.0321 28 1 1.5615 2.4678 -1.2085 29 1 2.9293 0.8867 2.3086 30 1 3.4384 -1.0429 4.1085 31 1 3.3428 -3.7574 3.9202 32 1 2.2917 -4.4341 2.6531 33 1 1.7094 -5.6033 5.0103 34 1 -0.8170 -6.6650 4.9407 35 1 -2.0346 -5.3657 5.3021 36 1 -0.9231 -8.3925 6.4305 37 1 -1.0302 -8.2073 8.1976 38 1 -3.2240 -8.4845 5.0471 39 1 -5.7010 -8.8847 5.8188 40 1 -3.4501 -8.0483 9.2677 41 1 0.4940 -5.4592 8.1771 42 1 0.9665 -6.7309 6.9685 43 1 1.2981 -2.6763 0.9565 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_14644196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:46 Heat of formation + Delta-G solvation = 67.698594 kcal Electronic energy + Delta-G solvation = -25305.695383 eV Core-core repulsion = 21548.170951 eV Total energy + Delta-G solvation = -3757.524432 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.94399 -42.33701 -41.03718 -39.43160 -37.70958 -35.38468 -34.06743 -32.91639 -31.93401 -30.42807 -29.61226 -28.50118 -26.73176 -25.43572 -23.94913 -22.26801 -22.03933 -21.58600 -21.37102 -21.13721 -20.57998 -18.94577 -18.43162 -18.08240 -17.40429 -16.85459 -16.45130 -16.34853 -16.21641 -15.84882 -15.27712 -15.18614 -15.05557 -14.84158 -14.61709 -14.33793 -14.21147 -14.15720 -14.11533 -13.89152 -13.56050 -13.46636 -13.42049 -12.94599 -12.66916 -12.26343 -12.11074 -12.00658 -11.96038 -11.45287 -10.97348 -10.90481 -10.64881 -10.48135 -10.03032 -9.80577 -9.44541 -8.96970 -4.94478 1.10038 1.15942 1.27832 1.61248 1.67498 1.87842 1.90709 1.94339 2.23243 2.33454 2.51931 3.39294 3.48947 3.49258 3.67689 3.70178 3.76900 3.80342 3.89580 4.02266 4.03628 4.17206 4.20685 4.24752 4.35632 4.44907 4.48642 4.58830 4.61522 4.70330 4.74956 4.78985 4.79421 4.81172 4.96374 5.03875 5.22358 5.25075 5.28448 5.36725 5.58404 5.82912 5.99322 6.12857 6.32852 6.54715 6.63222 6.66689 7.16638 7.28724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.055 4.055 3 Si 0.801 3.199 4 C -0.023 4.023 5 C -0.202 4.202 6 C -0.201 4.201 7 C 0.032 3.968 8 C -0.067 4.067 9 C 0.510 3.490 10 O -0.578 6.578 11 N -0.706 5.706 12 C 0.116 3.884 13 H 0.084 0.916 14 C -0.144 4.144 15 C -0.119 4.119 16 H 0.085 0.915 17 C 0.115 3.885 18 N -0.453 5.453 19 C -0.045 4.045 20 C -0.069 4.069 21 N -0.547 5.547 22 C 0.173 3.827 23 C -0.115 4.115 24 N -0.538 5.538 25 H 0.395 0.605 26 H 0.107 0.893 27 H -0.284 1.284 28 H -0.294 1.294 29 H 0.153 0.847 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.127 0.873 33 H 0.420 0.580 34 H 0.103 0.897 35 H 0.045 0.955 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.196 0.804 39 H 0.170 0.830 40 H 0.228 0.772 41 H 0.084 0.916 42 H 0.120 0.880 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.799 -4.073 1.592 8.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.164 4.164 3 Si 0.705 3.295 4 C -0.136 4.136 5 C -0.226 4.226 6 C -0.226 4.226 7 C -0.082 4.082 8 C -0.108 4.108 9 C 0.297 3.703 10 O -0.457 6.457 11 N -0.358 5.358 12 C 0.010 3.990 13 H 0.102 0.898 14 C -0.183 4.183 15 C -0.138 4.138 16 H 0.104 0.896 17 C -0.006 4.006 18 N -0.135 5.135 19 C -0.179 4.179 20 C -0.216 4.216 21 N -0.266 5.266 22 C -0.110 4.110 23 C -0.154 4.154 24 N -0.134 5.134 25 H 0.245 0.755 26 H 0.124 0.876 27 H -0.210 1.210 28 H -0.221 1.221 29 H 0.171 0.829 30 H 0.159 0.841 31 H 0.162 0.838 32 H 0.145 0.855 33 H 0.258 0.742 34 H 0.122 0.878 35 H 0.064 0.936 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.213 0.787 39 H 0.187 0.813 40 H 0.244 0.756 41 H 0.103 0.897 42 H 0.138 0.862 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 7.203 -3.295 1.113 7.999 hybrid contribution 0.288 -0.907 -1.013 1.390 sum 7.492 -4.202 0.100 8.590 Atomic orbital electron populations 1.86429 1.17680 1.82276 1.50502 1.24976 0.84843 1.11472 0.95125 0.92910 0.77769 0.74413 0.84390 1.20994 1.07495 0.84808 1.00323 1.20934 1.05758 1.00298 0.95642 1.20861 1.07761 0.92442 1.01488 1.19967 1.02611 0.97121 0.88522 1.20265 0.99401 0.93519 0.97570 1.21051 0.85748 0.81978 0.81517 1.90758 1.47255 1.39442 1.68226 1.45832 1.31933 1.17856 1.40211 1.22406 0.87622 0.98640 0.90285 0.89801 1.23579 0.98289 0.99525 0.96868 1.22656 0.98572 0.95164 0.97441 0.89647 1.22195 0.76251 0.95392 1.06811 1.45759 1.10423 1.50588 1.06688 1.23062 0.92641 1.08687 0.93480 1.22616 0.97792 1.09307 0.91857 1.70238 1.23627 1.20613 1.12107 1.25518 0.84916 1.04556 0.95995 1.23289 0.95263 0.98450 0.98369 1.41905 1.44213 1.09157 1.18087 0.75537 0.87582 1.21043 1.22129 0.82921 0.84060 0.83802 0.85479 0.74203 0.87832 0.93585 0.86820 0.86319 0.78664 0.81300 0.75592 0.89717 0.86195 0.74501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.66 12.88 -148.98 -1.92 -3.58 16 2 C -0.05 -0.09 3.08 71.24 0.22 0.13 16 3 Si 0.80 -0.30 30.60 68.60 2.10 1.80 16 4 C -0.02 -0.08 6.50 41.08 0.27 0.19 16 5 C -0.20 -0.83 9.37 22.14 0.21 -0.62 16 6 C -0.20 -0.88 10.77 22.14 0.24 -0.65 16 7 C 0.03 0.06 5.66 41.08 0.23 0.29 16 8 C -0.07 0.42 6.24 29.10 0.18 0.60 16 9 C 0.51 -0.32 7.82 87.66 0.69 0.36 16 10 O -0.58 -6.27 15.63 -3.03 -0.05 -6.31 16 11 N -0.71 5.37 5.36 -439.76 -2.36 3.01 16 12 C 0.12 -0.62 4.24 45.58 0.19 -0.43 16 13 H 0.08 0.16 7.46 -2.39 -0.02 0.14 16 14 C -0.14 0.90 7.45 31.18 0.23 1.13 16 15 C -0.12 1.08 3.96 -10.26 -0.04 1.04 16 16 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 17 C 0.11 -1.23 5.97 86.38 0.52 -0.71 16 18 N -0.45 1.06 2.75 -529.06 -1.46 -0.39 16 19 C -0.04 -0.01 11.58 83.08 0.96 0.95 16 20 C -0.07 -0.45 11.87 83.52 0.99 0.54 16 21 N -0.55 -5.57 11.25 -200.31 -2.25 -7.82 16 22 C 0.17 0.40 12.56 180.26 2.26 2.67 16 23 C -0.12 1.38 7.40 31.12 0.23 1.61 16 24 N -0.54 -1.23 6.07 -171.11 -1.04 -2.27 16 25 H 0.39 -1.27 8.70 -74.06 -0.64 -1.91 16 26 H 0.11 0.17 7.96 -2.39 -0.02 0.15 16 27 H -0.28 -1.26 7.11 99.48 0.71 -0.55 16 28 H -0.29 -1.74 7.11 99.48 0.71 -1.03 16 29 H 0.15 0.05 6.24 -2.91 -0.02 0.03 16 30 H 0.14 0.30 8.06 -2.91 -0.02 0.27 16 31 H 0.14 -1.66 8.14 -2.39 -0.02 -1.68 16 32 H 0.13 -1.50 8.14 -2.39 -0.02 -1.52 16 33 H 0.42 -6.38 8.73 -92.71 -0.81 -7.19 16 34 H 0.10 -1.00 7.92 -2.39 -0.02 -1.02 16 35 H 0.05 0.00 8.14 -2.39 -0.02 -0.01 16 36 H 0.11 -1.61 7.88 -2.39 -0.02 -1.63 16 37 H 0.12 -1.70 8.14 -2.39 -0.02 -1.72 16 38 H 0.20 -1.15 8.06 -2.91 -0.02 -1.18 16 39 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 40 H 0.23 -1.07 8.06 -2.91 -0.02 -1.09 16 41 H 0.08 -0.95 8.14 -2.39 -0.02 -0.97 16 42 H 0.12 -2.05 8.08 -2.39 -0.02 -2.07 16 43 H 0.42 -0.43 8.96 -92.70 -0.83 -1.26 16 Total: 0.00 -31.74 366.23 -0.78 -32.52 By element: Atomic # 1 Polarization: -22.85 SS G_CDS: -1.19 Total: -24.04 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 7.38 Total: 7.09 kcal Atomic # 7 Polarization: -0.37 SS G_CDS: -7.11 Total: -7.48 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -1.97 Total: -9.89 kcal Atomic # 14 Polarization: -0.30 SS G_CDS: 2.10 Total: 1.80 kcal Total: -31.74 -0.78 -32.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_14644196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.223 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds