Wall clock time and date at job start Tue Mar 9 2021 13:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86299 * 109.47104 * 2 1 4 4 C 1.50698 * 109.47127 * 119.99944 * 2 1 3 5 5 C 1.34500 * 125.49439 * 210.26747 * 4 2 1 6 6 C 1.46747 * 106.36394 * 180.14233 * 5 4 2 7 7 C 1.47266 * 126.96895 * 179.88273 * 6 5 4 8 8 O 1.21633 * 120.00190 * 179.41203 * 7 6 5 9 9 N 1.34777 * 119.99891 * 359.68281 * 7 6 5 10 10 C 1.46496 * 119.99875 * 179.97438 * 9 7 6 11 11 H 1.08999 * 112.85295 * 336.20319 * 10 9 7 12 12 C 1.53782 * 113.61172 * 107.50721 * 10 9 7 13 13 C 1.53778 * 87.08331 * 139.98114 * 12 10 9 14 14 H 1.08999 * 113.61632 * 89.11422 * 13 12 10 15 15 C 1.53009 * 113.69357 * 220.00793 * 13 12 10 16 16 N 1.46496 * 109.47096 * 272.53181 * 15 13 12 17 17 C 1.36885 * 126.39364 * 90.00003 * 16 15 13 18 18 C 1.34670 * 106.81420 * 180.02562 * 17 16 15 19 19 N 1.34125 * 108.02349 * 359.97438 * 18 17 16 20 20 C 1.30503 * 109.25644 * 359.72857 * 19 18 17 21 21 C 1.53778 * 87.08021 * 334.56799 * 13 12 10 22 22 C 1.36333 * 106.06391 * 359.62065 * 6 5 4 23 23 C 1.51002 * 126.79284 * 180.25941 * 22 6 5 24 24 C 1.53407 * 108.24751 * 164.28084 * 23 22 6 25 25 C 1.53158 * 109.04145 * 48.47443 * 24 23 22 26 26 C 1.53128 * 109.52479 * 290.42359 * 25 24 23 27 27 N 1.35217 * 108.65949 * 0.23884 * 22 6 5 28 28 H 0.96703 * 114.00214 * 300.00214 * 1 2 3 29 29 H 1.09003 * 109.47116 * 240.00103 * 2 1 3 30 30 H 1.48504 * 110.00088 * 299.99944 * 3 2 1 31 31 H 1.48499 * 110.00201 * 61.31927 * 3 2 1 32 32 H 1.07996 * 126.81960 * 0.02562 * 5 4 2 33 33 H 0.96999 * 120.00043 * 0.02562 * 9 7 6 34 34 H 1.09002 * 113.61384 * 254.52925 * 12 10 9 35 35 H 1.09000 * 113.61838 * 25.43326 * 12 10 9 36 36 H 1.09002 * 109.46787 * 32.53339 * 15 13 12 37 37 H 1.08998 * 109.46582 * 152.52977 * 15 13 12 38 38 H 1.07999 * 126.59469 * 0.03322 * 17 16 15 39 39 H 1.08005 * 125.98409 * 180.02562 * 18 17 16 40 40 H 1.07996 * 125.65233 * 180.29143 * 20 19 18 41 41 H 1.09008 * 113.61455 * 270.88498 * 21 13 12 42 42 H 1.09005 * 113.69364 * 139.99415 * 21 13 12 43 43 H 1.09007 * 109.70719 * 283.98958 * 23 22 6 44 44 H 1.08994 * 109.70850 * 44.61067 * 23 22 6 45 45 H 1.08997 * 109.54793 * 288.60112 * 24 23 22 46 46 H 1.09000 * 109.60786 * 168.38290 * 24 23 22 47 47 H 1.08995 * 109.46162 * 170.40405 * 25 24 23 48 48 H 1.09001 * 109.46191 * 50.43834 * 25 24 23 49 49 H 1.09007 * 109.56128 * 291.17421 * 26 25 24 50 50 H 1.09004 * 109.65776 * 170.89260 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 3.0833 -0.4429 1.8710 6 6 3.1555 -1.3779 2.9997 7 6 4.2335 -1.4798 3.9978 8 8 4.1581 -2.2998 4.8930 9 7 5.3011 -0.6606 3.9226 10 6 6.3733 -0.7616 4.9158 11 1 6.0397 -1.2019 5.8555 12 6 7.6661 -1.3864 4.3652 13 6 8.4310 -0.3375 5.1895 14 1 8.6612 -0.6625 6.2041 15 6 9.6436 0.2497 4.4643 16 7 10.8158 -0.5935 4.7113 17 6 11.2224 -1.6604 3.9563 18 6 12.3370 -2.1456 4.5360 19 7 12.6040 -1.3950 5.6150 20 6 11.7004 -0.4596 5.7229 21 6 7.1719 0.5403 5.0947 22 6 2.0194 -2.1292 2.9405 23 6 1.6152 -3.2339 3.8874 24 6 0.1220 -3.5197 3.6826 25 6 -0.1570 -3.6699 2.1841 26 6 -0.0055 -2.3101 1.4966 27 7 1.2884 -1.7250 1.8772 28 1 -0.3934 0.4417 0.7650 29 1 1.7923 -0.5138 -0.8900 30 1 1.5614 2.4679 -1.2085 31 1 1.5879 2.4586 1.2242 32 1 3.8116 0.3093 1.6061 33 1 5.3592 -0.0037 3.2113 34 1 7.8327 -2.4105 4.6992 35 1 7.7848 -1.2667 3.2883 36 1 9.4429 0.2883 3.3936 37 1 9.8357 1.2567 4.8345 38 1 10.7419 -2.0401 3.0668 39 1 12.9151 -2.9904 4.1917 40 1 11.6643 0.2948 6.4949 41 1 7.1554 1.1868 4.2172 42 1 6.9385 1.0726 6.0169 43 1 2.1946 -4.1320 3.6731 44 1 1.7912 -2.9190 4.9159 45 1 -0.4657 -2.6932 4.0819 46 1 -0.1480 -4.4415 4.1979 47 1 -1.1722 -4.0391 2.0390 48 1 0.5515 -4.3764 1.7518 49 1 -0.8123 -1.6490 1.8133 50 1 -0.0434 -2.4398 0.4149 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_16915396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:54 Heat of formation + Delta-G solvation = 65.662740 kcal Electronic energy + Delta-G solvation = -31607.428904 eV Core-core repulsion = 27410.514812 eV Total energy + Delta-G solvation = -4196.914092 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.89772 -42.78422 -40.87838 -39.23100 -38.06631 -36.89152 -35.29704 -33.90570 -33.42409 -31.17259 -30.38441 -29.67276 -28.51568 -26.67235 -26.61181 -24.79887 -24.65252 -23.07247 -22.21602 -21.73665 -21.68565 -21.19029 -20.57831 -19.61899 -18.85981 -18.34902 -17.42144 -17.10427 -16.95819 -16.63901 -16.26113 -15.99617 -15.79007 -15.69584 -15.33482 -15.25926 -15.14625 -15.09466 -14.82172 -14.71558 -14.62056 -14.33560 -14.12900 -14.07626 -13.89984 -13.44426 -13.34557 -13.20959 -12.80047 -12.71641 -12.41650 -12.22424 -12.15158 -12.03624 -11.89023 -11.86676 -11.77275 -11.37387 -10.90023 -10.89553 -10.84228 -10.42896 -10.00805 -9.55114 -9.39704 -9.04269 -4.90123 0.71886 1.07195 1.20640 1.45269 1.69468 1.79238 1.98326 2.05967 2.27646 2.47788 2.54858 3.22050 3.46117 3.46776 3.55531 3.55886 3.66226 3.76107 3.78096 3.79436 3.86821 3.93876 4.09377 4.13568 4.23666 4.27851 4.30583 4.34350 4.36895 4.50774 4.52886 4.62044 4.64049 4.73005 4.75520 4.77898 4.79410 4.81944 4.85415 4.87328 4.93945 4.98148 5.04328 5.10096 5.14934 5.17118 5.32237 5.42477 5.67533 5.74914 5.87650 6.03071 6.21007 6.35769 6.37855 6.73312 7.21107 7.40679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.058 4.058 3 Si 0.806 3.194 4 C -0.019 4.019 5 C -0.158 4.158 6 C -0.255 4.255 7 C 0.588 3.412 8 O -0.594 6.594 9 N -0.701 5.701 10 C 0.116 3.884 11 H 0.085 0.915 12 C -0.143 4.143 13 C -0.117 4.117 14 H 0.085 0.915 15 C 0.115 3.885 16 N -0.452 5.452 17 C -0.044 4.044 18 C -0.070 4.070 19 N -0.547 5.547 20 C 0.172 3.828 21 C -0.116 4.116 22 C 0.099 3.901 23 C -0.054 4.054 24 C -0.124 4.124 25 C -0.135 4.135 26 C 0.105 3.895 27 N -0.429 5.429 28 H 0.384 0.616 29 H 0.130 0.870 30 H -0.299 1.299 31 H -0.291 1.291 32 H 0.188 0.812 33 H 0.417 0.583 34 H 0.046 0.954 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.197 0.803 39 H 0.169 0.831 40 H 0.227 0.773 41 H 0.121 0.879 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.107 0.893 48 H 0.068 0.932 49 H 0.092 0.908 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.797 5.420 -5.321 8.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.166 4.166 3 Si 0.709 3.291 4 C -0.127 4.127 5 C -0.181 4.181 6 C -0.265 4.265 7 C 0.378 3.622 8 O -0.477 6.477 9 N -0.352 5.352 10 C 0.011 3.989 11 H 0.103 0.897 12 C -0.182 4.182 13 C -0.136 4.136 14 H 0.103 0.897 15 C -0.006 4.006 16 N -0.134 5.134 17 C -0.178 4.178 18 C -0.216 4.216 19 N -0.266 5.266 20 C -0.110 4.110 21 C -0.154 4.154 22 C -0.019 4.019 23 C -0.092 4.092 24 C -0.161 4.161 25 C -0.172 4.172 26 C -0.015 4.015 27 N -0.105 5.105 28 H 0.234 0.766 29 H 0.147 0.853 30 H -0.227 1.227 31 H -0.217 1.217 32 H 0.204 0.796 33 H 0.254 0.746 34 H 0.065 0.935 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.214 0.786 39 H 0.187 0.813 40 H 0.244 0.756 41 H 0.139 0.861 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.125 0.875 48 H 0.086 0.914 49 H 0.110 0.890 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.782 5.228 -4.893 8.098 hybrid contribution -1.665 -0.398 -0.003 1.711 sum -5.447 4.830 -4.896 8.773 Atomic orbital electron populations 1.86568 1.18357 1.80108 1.50310 1.25090 0.83340 1.11936 0.96215 0.93535 0.89715 0.69655 0.76166 1.21017 0.96425 0.95523 0.99758 1.22017 0.98438 1.02391 0.95262 1.20004 0.97989 1.05952 1.02537 1.17633 0.81568 0.79860 0.83132 1.90746 1.80192 1.39071 1.37676 1.45574 1.19839 1.38197 1.31560 1.22412 0.85217 0.98910 0.92395 0.89722 1.23559 0.95056 0.98314 1.01234 1.22638 0.93477 0.97740 0.99772 0.89656 1.22205 0.81069 0.94112 1.03244 1.45761 1.21972 1.24271 1.21391 1.23078 0.99865 0.93347 1.01502 1.22608 0.99627 1.03551 0.95845 1.70231 1.27732 1.07838 1.20845 1.25501 0.88562 1.01496 0.95461 1.23307 0.91832 0.95378 1.04916 1.20559 0.91981 0.98321 0.91050 1.20417 0.96833 0.94676 0.97224 1.21694 0.94513 1.03398 0.96531 1.21923 1.04551 0.95540 0.95200 1.22241 0.82231 0.95397 1.01624 1.44034 1.17938 1.27331 1.21240 0.76636 0.85278 1.22660 1.21738 0.79550 0.74571 0.93464 0.87740 0.86664 0.86255 0.78624 0.81324 0.75637 0.86080 0.89793 0.90407 0.90229 0.91339 0.89400 0.87485 0.91355 0.88951 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.50 10.68 -148.98 -1.59 -0.09 16 2 C -0.06 0.27 2.99 71.24 0.21 0.49 16 3 Si 0.81 -5.26 31.10 68.60 2.13 -3.13 16 4 C -0.02 0.03 6.15 40.99 0.25 0.28 16 5 C -0.16 0.42 9.08 23.64 0.21 0.63 16 6 C -0.25 -1.05 6.28 -19.12 -0.12 -1.17 16 7 C 0.59 3.78 7.81 86.62 0.68 4.45 16 8 O -0.59 -8.79 14.93 -4.13 -0.06 -8.85 16 9 N -0.70 1.49 5.35 -443.45 -2.37 -0.89 16 10 C 0.12 -0.29 4.24 45.52 0.19 -0.10 16 11 H 0.08 0.36 7.46 -2.39 -0.02 0.34 16 12 C -0.14 0.62 7.43 31.12 0.23 0.85 16 13 C -0.12 0.91 3.96 -10.27 -0.04 0.87 16 14 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 15 C 0.11 -1.14 5.99 86.38 0.52 -0.63 16 16 N -0.45 0.78 2.75 -529.06 -1.46 -0.67 16 17 C -0.04 -0.04 11.58 83.09 0.96 0.92 16 18 C -0.07 -0.49 11.87 83.52 0.99 0.50 16 19 N -0.55 -5.82 11.25 -200.31 -2.25 -8.07 16 20 C 0.17 0.49 12.56 180.26 2.26 2.75 16 21 C -0.12 1.17 7.39 31.12 0.23 1.40 16 22 C 0.10 0.46 6.57 41.69 0.27 0.74 16 23 C -0.05 -0.22 5.33 30.08 0.16 -0.06 16 24 C -0.12 0.19 5.98 30.78 0.18 0.38 16 25 C -0.13 0.54 5.92 30.69 0.18 0.72 16 26 C 0.11 -0.33 5.32 86.32 0.46 0.13 16 27 N -0.43 -0.31 3.11 -493.61 -1.54 -1.85 16 28 H 0.38 -2.65 8.63 -74.05 -0.64 -3.29 16 29 H 0.13 -0.82 7.96 -2.39 -0.02 -0.84 16 30 H -0.30 -0.29 7.11 99.48 0.71 0.42 16 31 H -0.29 0.20 7.11 99.48 0.71 0.91 16 32 H 0.19 -2.10 6.51 -2.91 -0.02 -2.12 16 33 H 0.42 -3.82 7.85 -92.71 -0.73 -4.55 16 34 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.10 -0.80 7.90 -2.39 -0.02 -0.82 16 36 H 0.12 -1.55 7.85 -2.39 -0.02 -1.57 16 37 H 0.12 -1.64 8.14 -2.39 -0.02 -1.66 16 38 H 0.20 -1.02 8.06 -2.91 -0.02 -1.04 16 39 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 40 H 0.23 -0.95 8.06 -2.91 -0.02 -0.97 16 41 H 0.12 -1.87 8.08 -2.38 -0.02 -1.89 16 42 H 0.08 -0.80 8.14 -2.38 -0.02 -0.82 16 43 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 44 H 0.08 0.62 7.39 -2.39 -0.02 0.60 16 45 H 0.07 -0.10 8.12 -2.39 -0.02 -0.12 16 46 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 47 H 0.11 -0.81 8.14 -2.39 -0.02 -0.82 16 48 H 0.07 -0.15 8.11 -2.39 -0.02 -0.17 16 49 H 0.09 -0.49 7.94 -2.38 -0.02 -0.50 16 50 H 0.10 -0.32 7.68 -2.39 -0.02 -0.34 16 Total: 0.00 -29.46 402.52 0.34 -29.12 By element: Atomic # 1 Polarization: -18.37 SS G_CDS: -0.37 Total: -18.74 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 7.84 Total: 13.16 kcal Atomic # 7 Polarization: -3.86 SS G_CDS: -7.62 Total: -11.48 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -1.65 Total: -8.94 kcal Atomic # 14 Polarization: -5.26 SS G_CDS: 2.13 Total: -3.13 kcal Total: -29.46 0.34 -29.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_16915396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.780 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds