Wall clock time and date at job start Tue Mar 9 2021 13:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86300 * 109.47554 * 2 1 4 4 C 1.50700 * 109.47079 * 240.00057 * 2 1 3 5 5 C 1.38271 * 119.94201 * 300.00083 * 4 2 1 6 6 C 1.38142 * 120.05516 * 179.97438 * 5 4 2 7 7 C 1.38739 * 119.94348 * 359.97438 * 6 5 4 8 8 O 1.35898 * 120.05574 * 180.02562 * 7 6 5 9 9 C 1.42895 * 117.00295 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47493 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47264 * 180.02562 * 10 9 8 12 12 O 1.21278 * 120.00238 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00263 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00256 * 180.02562 * 13 11 10 15 15 H 1.08998 * 112.90537 * 336.25354 * 14 13 11 16 16 C 1.53780 * 113.61576 * 107.50144 * 14 13 11 17 17 C 1.53781 * 87.08076 * 139.97790 * 16 14 13 18 18 H 1.09003 * 113.68495 * 89.13014 * 17 16 14 19 19 C 1.52999 * 113.61508 * 220.01902 * 17 16 14 20 20 N 1.46507 * 109.46750 * 272.49997 * 19 17 16 21 21 C 1.36878 * 126.39829 * 90.00767 * 20 19 17 22 22 C 1.34666 * 106.81597 * 180.23772 * 21 20 19 23 23 N 1.34129 * 108.02165 * 359.60606 * 22 21 20 24 24 C 1.30498 * 109.25671 * 0.40230 * 23 22 21 25 25 C 1.53781 * 113.61268 * 205.00129 * 14 13 11 26 26 C 1.38724 * 119.88764 * 0.28084 * 7 6 5 27 27 C 1.38146 * 119.94599 * 359.46617 * 26 7 6 28 28 H 0.96710 * 113.99602 * 299.99915 * 1 2 3 29 29 H 1.09001 * 109.47057 * 120.00619 * 2 1 3 30 30 H 1.48499 * 109.99928 * 300.00325 * 3 2 1 31 31 H 1.48499 * 109.99646 * 61.32086 * 3 2 1 32 32 H 1.08003 * 119.97225 * 0.02562 * 5 4 2 33 33 H 1.08000 * 120.02878 * 180.02562 * 6 5 4 34 34 H 1.09004 * 109.47033 * 60.00400 * 9 8 7 35 35 H 1.08996 * 109.47196 * 300.00331 * 9 8 7 36 36 H 1.08998 * 109.47487 * 59.99869 * 10 9 8 37 37 H 1.09007 * 109.47317 * 299.99846 * 10 9 8 38 38 H 0.97001 * 119.99625 * 359.97438 * 13 11 10 39 39 H 1.08999 * 113.61480 * 25.43304 * 16 14 13 40 40 H 1.08998 * 113.61407 * 254.53425 * 16 14 13 41 41 H 1.09001 * 109.46790 * 152.50433 * 19 17 16 42 42 H 1.08994 * 109.47333 * 32.49938 * 19 17 16 43 43 H 1.08002 * 126.58785 * 359.96564 * 21 20 19 44 44 H 1.08003 * 125.98708 * 179.75770 * 22 21 20 45 45 H 1.07999 * 125.65025 * 179.72938 * 24 23 22 46 46 H 1.08997 * 113.61616 * 105.47175 * 25 14 13 47 47 H 1.08997 * 113.61453 * 334.56684 * 25 14 13 48 48 H 1.08007 * 120.03112 * 179.72096 * 26 7 6 49 49 H 1.07997 * 119.97557 * 180.23356 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.5965 -2.0342 -1.4481 6 6 2.0552 -2.6875 -2.5755 7 6 2.8520 -2.0141 -3.4901 8 8 3.3041 -2.6544 -4.6002 9 6 4.1202 -1.8992 -5.4977 10 6 4.5298 -2.7807 -6.6792 11 6 5.3909 -1.9843 -7.6254 12 8 5.6518 -0.8259 -7.3788 13 7 5.8720 -2.5597 -8.7452 14 6 6.7096 -1.7857 -9.6647 15 1 6.5467 -0.7110 -9.5844 16 6 8.1936 -2.1878 -9.6330 17 6 8.1906 -2.0203 -11.1616 18 1 8.4326 -1.0101 -11.4919 19 6 8.9940 -3.0945 -11.8975 20 7 10.3944 -2.6753 -11.9955 21 6 11.3866 -2.9392 -11.0902 22 6 12.5097 -2.3683 -11.5657 23 7 12.2135 -1.7796 -12.7339 24 6 10.9475 -1.9566 -12.9962 25 6 6.6805 -2.3068 -11.1113 26 6 3.1909 -0.6875 -3.2667 27 6 2.7253 -0.0371 -2.1404 28 1 -0.3933 0.4417 0.7652 29 1 1.7923 -0.5139 0.8899 30 1 1.5615 2.4679 -1.2084 31 1 1.5880 2.4584 1.2243 32 1 0.9751 -2.5576 -0.7365 33 1 1.7931 -3.7214 -2.7453 34 1 5.0123 -1.5543 -4.9749 35 1 3.5585 -1.0397 -5.8637 36 1 3.6376 -3.1253 -7.2020 37 1 5.0914 -3.6404 -6.3136 38 1 5.6643 -3.4866 -8.9419 39 1 8.3610 -3.2142 -9.3066 40 1 8.8297 -1.4692 -9.1161 41 1 8.5850 -3.2322 -12.8984 42 1 8.9336 -4.0338 -11.3478 43 1 11.2866 -3.4943 -10.1692 44 1 13.4797 -2.3841 -11.0909 45 1 10.4280 -1.5888 -13.8687 46 1 6.0952 -1.6843 -11.7880 47 1 6.4342 -3.3658 -11.1890 48 1 3.8148 -0.1624 -3.9749 49 1 2.9857 0.9967 -1.9679 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_4549602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:04 Heat of formation + Delta-G solvation = 15.122956 kcal Electronic energy + Delta-G solvation = -29670.956457 eV Core-core repulsion = 25374.132134 eV Total energy + Delta-G solvation = -4296.824323 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.93352 -41.46539 -41.07373 -39.67409 -39.03318 -37.38247 -35.42779 -34.11234 -33.23127 -32.03816 -31.52927 -30.40461 -28.78995 -26.75368 -26.65277 -25.70918 -24.12887 -23.21044 -22.25500 -22.09158 -21.73452 -21.51635 -20.59338 -19.49310 -18.55664 -18.45130 -17.92898 -17.47917 -17.34457 -17.06877 -16.78422 -16.38921 -16.07388 -15.94825 -15.71768 -15.52966 -15.18856 -14.90022 -14.77985 -14.65187 -14.45456 -14.38831 -14.14505 -14.07626 -13.89875 -13.70018 -13.52721 -13.42312 -13.00561 -12.86810 -12.76102 -12.45944 -12.27926 -12.00783 -11.96637 -11.75700 -11.72655 -11.44958 -11.04344 -10.90624 -10.50243 -10.47460 -10.08620 -10.04846 -9.43233 -9.21203 -4.95524 0.26293 0.29657 1.16740 1.28906 1.50261 1.56376 1.71243 1.92156 1.95126 2.24438 2.50999 2.61082 3.38538 3.38973 3.48257 3.55944 3.70233 3.74931 3.77815 3.81021 3.89812 3.90714 3.91834 4.02363 4.04541 4.17731 4.22691 4.24986 4.32622 4.41141 4.43871 4.48241 4.60418 4.65573 4.68638 4.70925 4.74717 4.77719 4.79490 4.82077 4.95875 4.96341 5.03390 5.17068 5.20251 5.26756 5.37487 5.49131 5.54599 5.69944 5.84303 6.30510 6.33820 6.47646 6.59357 7.17100 7.17842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.076 4.076 3 Si 0.753 3.247 4 C -0.125 4.125 5 C -0.060 4.060 6 C -0.157 4.157 7 C 0.123 3.877 8 O -0.319 6.319 9 C 0.071 3.929 10 C -0.132 4.132 11 C 0.519 3.481 12 O -0.587 6.587 13 N -0.703 5.703 14 C 0.114 3.886 15 H 0.088 0.912 16 C -0.143 4.143 17 C -0.119 4.119 18 H 0.086 0.914 19 C 0.114 3.886 20 N -0.453 5.453 21 C -0.045 4.045 22 C -0.068 4.068 23 N -0.547 5.547 24 C 0.173 3.827 25 C -0.117 4.117 26 C -0.210 4.210 27 C -0.083 4.083 28 H 0.395 0.605 29 H 0.098 0.902 30 H -0.304 1.304 31 H -0.283 1.283 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.421 0.579 39 H 0.105 0.895 40 H 0.049 0.951 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.197 0.803 44 H 0.170 0.830 45 H 0.227 0.773 46 H 0.084 0.916 47 H 0.119 0.881 48 H 0.140 0.860 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.224 -6.780 -0.013 7.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.185 4.185 3 Si 0.659 3.341 4 C -0.125 4.125 5 C -0.078 4.078 6 C -0.176 4.176 7 C 0.077 3.923 8 O -0.233 6.233 9 C -0.005 4.005 10 C -0.172 4.172 11 C 0.306 3.694 12 O -0.467 6.467 13 N -0.355 5.355 14 C 0.009 3.991 15 H 0.106 0.894 16 C -0.182 4.182 17 C -0.138 4.138 18 H 0.104 0.896 19 C -0.007 4.007 20 N -0.134 5.134 21 C -0.179 4.179 22 C -0.215 4.215 23 N -0.266 5.266 24 C -0.110 4.110 25 C -0.155 4.155 26 C -0.228 4.228 27 C -0.100 4.100 28 H 0.245 0.755 29 H 0.116 0.884 30 H -0.232 1.232 31 H -0.210 1.210 32 H 0.160 0.840 33 H 0.163 0.837 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.259 0.741 39 H 0.123 0.877 40 H 0.068 0.932 41 H 0.136 0.864 42 H 0.132 0.868 43 H 0.214 0.786 44 H 0.187 0.813 45 H 0.244 0.756 46 H 0.102 0.898 47 H 0.137 0.863 48 H 0.158 0.842 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.780 -5.283 -0.943 5.654 hybrid contribution -1.449 -0.178 0.925 1.728 sum -3.229 -5.461 -0.018 6.344 Atomic orbital electron populations 1.86544 1.18613 1.80591 1.51082 1.24863 0.83928 1.11200 0.98552 0.94273 0.90663 0.72820 0.76328 1.19419 1.00957 0.94992 0.97137 1.20995 0.96765 0.93719 0.96334 1.20679 1.00860 1.01693 0.94359 1.19158 0.94615 0.91349 0.87159 1.85951 1.65309 1.40617 1.31428 1.22470 0.94104 0.94203 0.89683 1.21444 1.02000 0.99522 0.94187 1.20704 0.79489 0.86879 0.82319 1.90745 1.60854 1.19559 1.75561 1.45813 1.51422 1.16415 1.21811 1.22447 0.90112 0.96728 0.89860 0.89409 1.23560 0.96001 1.02904 0.95741 1.22661 0.96134 0.99598 0.95457 0.89554 1.22196 0.75794 0.98190 1.04489 1.45758 1.10260 1.40119 1.17309 1.23080 0.88458 1.07602 0.98713 1.22616 1.00262 1.03702 0.94939 1.70236 1.14746 1.24312 1.17351 1.25505 0.90081 0.99015 0.96414 1.23302 0.94113 1.04032 0.94074 1.21385 1.06026 0.94567 1.00832 1.20942 0.96482 0.99659 0.92930 0.75508 0.88442 1.23205 1.21025 0.84040 0.83694 0.91507 0.92020 0.85480 0.85274 0.74071 0.87694 0.93175 0.86388 0.86790 0.78574 0.81278 0.75648 0.89754 0.86262 0.84185 0.84194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.69 12.74 -148.98 -1.90 -3.59 16 2 C -0.08 -0.04 2.81 71.24 0.20 0.16 16 3 Si 0.75 -0.19 29.78 68.60 2.04 1.85 16 4 C -0.12 -0.50 5.42 -19.85 -0.11 -0.60 16 5 C -0.06 -0.22 9.60 22.25 0.21 -0.01 16 6 C -0.16 -0.60 9.99 22.37 0.22 -0.38 16 7 C 0.12 0.61 6.69 22.51 0.15 0.76 16 8 O -0.32 -1.01 10.14 -92.40 -0.94 -1.95 16 9 C 0.07 0.03 4.03 71.98 0.29 0.32 16 10 C -0.13 0.78 6.07 29.85 0.18 0.96 16 11 C 0.52 -0.68 7.83 87.66 0.69 0.01 16 12 O -0.59 -5.15 15.58 -3.02 -0.05 -5.19 16 13 N -0.70 5.43 5.35 -440.04 -2.36 3.07 16 14 C 0.11 -0.68 4.24 45.52 0.19 -0.48 16 15 H 0.09 0.06 7.47 -2.39 -0.02 0.04 16 16 C -0.14 1.00 7.43 31.12 0.23 1.23 16 17 C -0.12 1.13 3.96 -10.27 -0.04 1.09 16 18 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 19 C 0.11 -1.25 5.99 86.38 0.52 -0.74 16 20 N -0.45 1.20 2.75 -529.06 -1.46 -0.25 16 21 C -0.04 0.00 11.58 83.09 0.96 0.97 16 22 C -0.07 -0.43 11.87 83.52 0.99 0.56 16 23 N -0.55 -5.44 11.25 -200.31 -2.25 -7.69 16 24 C 0.17 0.36 12.56 180.26 2.26 2.63 16 25 C -0.12 1.42 7.39 31.12 0.23 1.65 16 26 C -0.21 -0.92 9.04 22.36 0.20 -0.72 16 27 C -0.08 -0.31 8.66 22.25 0.19 -0.11 16 28 H 0.39 -2.02 8.74 -74.05 -0.65 -2.66 16 29 H 0.10 -0.37 7.96 -2.39 -0.02 -0.39 16 30 H -0.30 -2.36 7.11 99.48 0.71 -1.66 16 31 H -0.28 -0.94 7.11 99.48 0.71 -0.23 16 32 H 0.14 0.13 8.06 -2.91 -0.02 0.11 16 33 H 0.15 0.08 8.06 -2.91 -0.02 0.06 16 34 H 0.07 0.11 7.61 -2.38 -0.02 0.09 16 35 H 0.06 0.15 7.63 -2.39 -0.02 0.13 16 36 H 0.13 -1.22 8.14 -2.39 -0.02 -1.24 16 37 H 0.13 -1.29 8.14 -2.38 -0.02 -1.31 16 38 H 0.42 -6.24 8.73 -92.71 -0.81 -7.05 16 39 H 0.10 -1.08 7.90 -2.39 -0.02 -1.10 16 40 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.12 -1.70 8.14 -2.39 -0.02 -1.72 16 42 H 0.11 -1.64 7.84 -2.39 -0.02 -1.65 16 43 H 0.20 -1.24 8.06 -2.91 -0.02 -1.27 16 44 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 45 H 0.23 -1.10 8.06 -2.91 -0.02 -1.13 16 46 H 0.08 -0.96 8.14 -2.39 -0.02 -0.98 16 47 H 0.12 -2.04 8.08 -2.39 -0.02 -2.05 16 48 H 0.14 0.33 6.30 -2.91 -0.02 0.31 16 49 H 0.14 0.03 4.87 -2.91 -0.01 0.02 16 Total: 0.00 -30.38 409.25 0.24 -30.14 By element: Atomic # 1 Polarization: -23.24 SS G_CDS: -0.44 Total: -23.68 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 7.58 Total: 7.29 kcal Atomic # 7 Polarization: 1.19 SS G_CDS: -6.07 Total: -4.87 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -2.88 Total: -10.73 kcal Atomic # 14 Polarization: -0.19 SS G_CDS: 2.04 Total: 1.85 kcal Total: -30.38 0.24 -30.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_4549602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.262 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds