Wall clock time and date at job start Tue Mar 9 2021 13:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86299 * 109.47089 * 2 1 4 4 C 1.50707 * 109.47110 * 119.99652 * 2 1 3 5 5 C 1.38236 * 119.97368 * 245.00581 * 4 2 1 6 6 C 1.38291 * 120.11097 * 179.97438 * 5 4 2 7 7 C 1.38120 * 120.05352 * 0.03500 * 6 5 4 8 8 C 1.38752 * 119.94802 * 359.97438 * 7 6 5 9 9 O 1.35895 * 120.05862 * 180.02562 * 8 7 6 10 10 C 1.42906 * 116.99828 * 359.97438 * 9 8 7 11 11 C 1.53008 * 109.46868 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.46832 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99871 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99878 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99875 * 180.02562 * 14 12 11 16 16 H 1.08992 * 112.85087 * 23.80850 * 15 14 12 17 17 C 1.53778 * 113.61199 * 155.00606 * 15 14 12 18 18 C 1.53784 * 87.08427 * 140.06306 * 17 15 14 19 19 H 1.08997 * 113.61223 * 89.19480 * 18 17 15 20 20 C 1.52994 * 113.61638 * 220.01868 * 18 17 15 21 21 N 1.46499 * 109.47010 * 184.99876 * 20 18 17 22 22 C 1.36887 * 126.39910 * 90.00068 * 21 20 18 23 23 C 1.34672 * 106.81700 * 179.97438 * 22 21 20 24 24 N 1.34127 * 108.01948 * 0.22851 * 23 22 21 25 25 C 1.30502 * 109.25683 * 359.61488 * 24 23 22 26 26 C 1.53781 * 87.07788 * 334.56756 * 18 17 15 27 27 C 1.38165 * 119.96664 * 65.29865 * 4 2 1 28 28 H 0.96697 * 114.00102 * 300.00537 * 1 2 3 29 29 H 1.08996 * 109.47248 * 239.99824 * 2 1 3 30 30 H 1.48504 * 109.99969 * 178.67358 * 3 2 1 31 31 H 1.48497 * 110.00258 * 299.99666 * 3 2 1 32 32 H 1.07996 * 119.94812 * 359.97438 * 5 4 2 33 33 H 1.08000 * 119.97143 * 180.02562 * 6 5 4 34 34 H 1.08001 * 120.02504 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.46721 * 60.00632 * 10 9 8 36 36 H 1.08994 * 109.47291 * 300.00280 * 10 9 8 37 37 H 1.09003 * 109.46895 * 60.00786 * 11 10 9 38 38 H 1.08994 * 109.47432 * 300.00241 * 11 10 9 39 39 H 0.96997 * 120.00030 * 0.02562 * 14 12 11 40 40 H 1.09001 * 113.61843 * 25.51623 * 17 15 14 41 41 H 1.09002 * 113.68865 * 254.61924 * 17 15 14 42 42 H 1.08996 * 109.47208 * 64.99570 * 20 18 17 43 43 H 1.08994 * 109.46968 * 304.99696 * 20 18 17 44 44 H 1.07997 * 126.58796 * 359.97438 * 22 21 20 45 45 H 1.08002 * 125.98510 * 179.97438 * 23 22 21 46 46 H 1.08003 * 125.64479 * 180.14464 * 25 24 23 47 47 H 1.09004 * 113.61800 * 139.98331 * 26 18 17 48 48 H 1.09004 * 113.61179 * 270.88093 * 26 18 17 49 49 H 1.07998 * 120.03374 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 2.6386 -0.0116 2.1910 6 6 3.1004 -0.6605 3.3216 7 6 2.8565 -2.0091 3.4933 8 6 2.1470 -2.7128 2.5306 9 8 1.9053 -4.0396 2.6975 10 6 2.4116 -4.6465 3.8881 11 6 2.0434 -6.1316 3.8998 12 6 2.5779 -6.7717 5.1551 13 8 3.1923 -6.1057 5.9611 14 7 2.3721 -8.0842 5.3824 15 6 2.8912 -8.7063 6.6029 16 1 3.0448 -7.9906 7.4104 17 6 2.1146 -9.9623 7.0322 18 6 3.4740 -10.5829 7.3953 19 1 3.7863 -10.3813 8.4199 20 6 3.5937 -12.0606 7.0174 21 7 4.8692 -12.5883 7.5079 22 6 5.0946 -13.1629 8.7298 23 6 6.3967 -13.5049 8.7653 24 7 6.9523 -13.1445 7.5989 25 6 6.0422 -12.5994 6.8389 26 6 4.0965 -9.6302 6.3610 27 6 1.6898 -2.0608 1.3948 28 1 -0.3933 0.4418 0.7650 29 1 1.7923 -0.5138 -0.8899 30 1 3.5346 1.7703 0.0323 31 1 1.5615 2.4679 -1.2085 32 1 2.8308 1.0428 2.0584 33 1 3.6523 -0.1123 4.0707 34 1 3.2177 -2.5155 4.3761 35 1 1.9751 -4.1575 4.7590 36 1 3.4960 -4.5404 3.9172 37 1 2.4796 -6.6209 3.0289 38 1 0.9590 -6.2373 3.8709 39 1 1.8804 -8.6167 4.7378 40 1 1.6104 -10.4669 6.2081 41 1 1.4642 -9.8023 7.8921 42 1 3.5509 -12.1630 5.9331 43 1 2.7725 -12.6183 7.4676 44 1 4.3679 -13.3129 9.5144 45 1 6.9052 -13.9819 9.5901 46 1 6.2017 -12.2167 5.8416 47 1 5.0466 -9.2008 6.6790 48 1 4.1342 -10.0441 5.3532 49 1 1.1409 -2.6072 0.6421 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_4549614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:07 Heat of formation + Delta-G solvation = 13.343689 kcal Electronic energy + Delta-G solvation = -29715.398512 eV Core-core repulsion = 25418.497034 eV Total energy + Delta-G solvation = -4296.901478 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.94918 -41.49124 -41.10298 -39.70045 -39.05451 -37.27062 -35.44706 -34.13069 -33.13492 -32.48145 -30.86531 -30.38716 -28.81143 -27.06282 -26.74023 -25.73719 -23.77582 -23.66033 -22.27240 -22.13405 -21.71623 -21.52130 -20.59954 -19.35181 -18.49984 -18.13647 -17.75225 -17.51097 -17.24162 -17.12460 -16.86390 -16.35712 -16.17711 -16.01578 -15.94899 -15.41645 -15.32271 -14.95981 -14.83566 -14.73093 -14.43607 -14.41583 -14.20484 -14.12851 -13.90954 -13.52233 -13.42911 -13.25114 -13.03475 -12.86926 -12.83423 -12.39948 -12.24369 -12.05466 -11.98373 -11.83449 -11.64776 -11.50093 -11.06186 -10.91147 -10.49848 -10.48479 -10.10085 -9.96739 -9.44817 -9.29438 -4.98642 0.17703 0.36944 1.15070 1.29441 1.47775 1.65283 1.70025 1.93285 1.97435 2.23112 2.49498 2.64483 3.36810 3.46665 3.49727 3.54746 3.65728 3.69141 3.73785 3.82887 3.87255 3.88360 3.95229 4.07343 4.07484 4.11526 4.19751 4.22188 4.25796 4.36524 4.43561 4.48749 4.60404 4.60804 4.65310 4.69892 4.72514 4.74665 4.77652 4.81108 4.94830 4.95624 5.02044 5.18725 5.23776 5.35594 5.35995 5.41877 5.52904 5.68346 5.82943 6.30243 6.32106 6.45577 6.75537 7.14754 7.16415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.077 4.077 3 Si 0.784 3.216 4 C -0.085 4.085 5 C -0.155 4.155 6 C -0.075 4.075 7 C -0.212 4.212 8 C 0.116 3.884 9 O -0.324 6.324 10 C 0.073 3.927 11 C -0.133 4.133 12 C 0.519 3.481 13 O -0.587 6.587 14 N -0.703 5.703 15 C 0.114 3.886 16 H 0.088 0.912 17 C -0.116 4.116 18 C -0.118 4.118 19 H 0.086 0.914 20 C 0.114 3.886 21 N -0.453 5.453 22 C -0.049 4.049 23 C -0.067 4.067 24 N -0.548 5.548 25 C 0.175 3.825 26 C -0.146 4.146 27 C -0.142 4.142 28 H 0.396 0.604 29 H 0.106 0.894 30 H -0.286 1.286 31 H -0.298 1.298 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.136 0.864 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.421 0.579 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.201 0.799 45 H 0.171 0.829 46 H 0.223 0.777 47 H 0.049 0.951 48 H 0.106 0.894 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.157 -1.074 0.912 7.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.187 4.187 3 Si 0.689 3.311 4 C -0.085 4.085 5 C -0.173 4.173 6 C -0.093 4.093 7 C -0.230 4.230 8 C 0.071 3.929 9 O -0.238 6.238 10 C -0.002 4.002 11 C -0.172 4.172 12 C 0.307 3.693 13 O -0.467 6.467 14 N -0.354 5.354 15 C 0.009 3.991 16 H 0.106 0.894 17 C -0.155 4.155 18 C -0.138 4.138 19 H 0.104 0.896 20 C -0.007 4.007 21 N -0.135 5.135 22 C -0.182 4.182 23 C -0.214 4.214 24 N -0.267 5.267 25 C -0.107 4.107 26 C -0.184 4.184 27 C -0.161 4.161 28 H 0.246 0.754 29 H 0.124 0.876 30 H -0.213 1.213 31 H -0.226 1.226 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.153 0.847 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.259 0.741 40 H 0.138 0.862 41 H 0.103 0.897 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.217 0.783 45 H 0.188 0.812 46 H 0.240 0.760 47 H 0.068 0.932 48 H 0.125 0.875 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.602 -0.547 0.135 5.630 hybrid contribution -0.335 -0.756 0.149 0.840 sum -5.937 -1.303 0.284 6.085 Atomic orbital electron populations 1.86471 1.17106 1.82237 1.50463 1.25289 0.85390 1.11216 0.96777 0.93586 0.77818 0.74904 0.84755 1.20247 0.97991 0.93377 0.96909 1.21170 1.00842 1.00536 0.94710 1.21260 0.97157 0.93418 0.97493 1.21550 1.04223 0.96629 1.00637 1.19141 0.95803 0.82988 0.94938 1.85951 1.74641 1.20310 1.42917 1.22447 0.99028 0.93246 0.85487 1.21450 1.05503 0.93348 0.96940 1.20671 0.78586 0.82686 0.87370 1.90743 1.43040 1.63767 1.49162 1.45809 1.57072 1.08941 1.23598 1.22443 0.95556 0.93513 0.87578 0.89358 1.23299 0.95438 0.93503 1.03231 1.22649 0.98261 0.93126 0.99755 0.89610 1.22197 0.82704 0.93413 1.02372 1.45758 1.10812 1.43889 1.13004 1.23160 0.99417 1.04839 0.90820 1.22630 0.93385 1.07807 0.97553 1.70238 1.33513 1.17682 1.05299 1.25404 0.80948 1.03536 1.00847 1.23591 0.97591 0.96777 1.00479 1.20334 1.04063 0.94396 0.97261 0.75424 0.87627 1.21275 1.22604 0.83248 0.82901 0.84659 0.91658 0.91962 0.85589 0.85379 0.74063 0.86239 0.89741 0.86415 0.86757 0.78251 0.81165 0.76033 0.93207 0.87526 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.67 12.84 -148.98 -1.91 -2.58 16 2 C -0.08 -0.04 2.80 71.24 0.20 0.16 16 3 Si 0.78 -1.55 29.80 68.60 2.04 0.49 16 4 C -0.08 -0.16 5.35 -19.88 -0.11 -0.27 16 5 C -0.16 0.08 8.67 22.28 0.19 0.28 16 6 C -0.08 0.00 10.04 22.25 0.22 0.22 16 7 C -0.21 -0.63 9.04 22.36 0.20 -0.43 16 8 C 0.12 0.60 6.69 22.51 0.15 0.75 16 9 O -0.32 -1.35 10.14 -92.37 -0.94 -2.29 16 10 C 0.07 0.06 4.03 71.98 0.29 0.35 16 11 C -0.13 0.70 6.07 29.85 0.18 0.88 16 12 C 0.52 -0.52 7.83 87.66 0.69 0.17 16 13 O -0.59 -5.25 15.58 -3.03 -0.05 -5.29 16 14 N -0.70 5.26 5.36 -440.05 -2.36 2.91 16 15 C 0.11 -0.67 4.24 45.52 0.19 -0.48 16 16 H 0.09 0.05 7.46 -2.39 -0.02 0.04 16 17 C -0.12 1.41 7.39 31.12 0.23 1.64 16 18 C -0.12 1.11 3.96 -10.27 -0.04 1.07 16 19 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 20 C 0.11 -1.23 5.99 86.38 0.52 -0.72 16 21 N -0.45 1.11 2.75 -529.08 -1.46 -0.35 16 22 C -0.05 0.00 11.58 83.09 0.96 0.96 16 23 C -0.07 -0.42 11.87 83.52 0.99 0.57 16 24 N -0.55 -5.57 11.25 -200.31 -2.25 -7.82 16 25 C 0.18 0.42 12.56 180.26 2.26 2.69 16 26 C -0.15 0.98 7.43 31.12 0.23 1.22 16 27 C -0.14 -0.69 9.63 22.37 0.22 -0.48 16 28 H 0.40 -2.78 8.70 -74.06 -0.64 -3.42 16 29 H 0.11 0.20 7.96 -2.39 -0.02 0.18 16 30 H -0.29 -0.80 7.11 99.48 0.71 -0.10 16 31 H -0.30 -1.58 7.11 99.48 0.71 -0.88 16 32 H 0.15 -0.83 4.90 -2.91 -0.01 -0.84 16 33 H 0.15 -0.75 8.06 -2.91 -0.02 -0.78 16 34 H 0.14 0.22 6.30 -2.91 -0.02 0.20 16 35 H 0.07 0.13 7.62 -2.39 -0.02 0.12 16 36 H 0.06 0.16 7.62 -2.39 -0.02 0.14 16 37 H 0.13 -1.11 8.14 -2.39 -0.02 -1.13 16 38 H 0.13 -1.17 8.14 -2.39 -0.02 -1.19 16 39 H 0.42 -6.13 8.73 -92.71 -0.81 -6.93 16 40 H 0.12 -2.04 8.08 -2.39 -0.02 -2.06 16 41 H 0.08 -0.97 8.14 -2.39 -0.02 -0.98 16 42 H 0.12 -1.72 7.84 -2.39 -0.02 -1.74 16 43 H 0.11 -1.58 8.14 -2.39 -0.02 -1.60 16 44 H 0.20 -1.32 8.06 -2.91 -0.02 -1.34 16 45 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 46 H 0.22 -0.91 8.06 -2.91 -0.02 -0.94 16 47 H 0.05 -0.04 8.14 -2.38 -0.02 -0.06 16 48 H 0.11 -1.09 7.90 -2.38 -0.02 -1.11 16 49 H 0.13 0.66 8.06 -2.91 -0.02 0.64 16 Total: 0.00 -30.27 409.34 0.23 -30.04 By element: Atomic # 1 Polarization: -23.25 SS G_CDS: -0.44 Total: -23.69 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 7.58 Total: 8.59 kcal Atomic # 7 Polarization: 0.80 SS G_CDS: -6.07 Total: -5.27 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -2.90 Total: -10.16 kcal Atomic # 14 Polarization: -1.55 SS G_CDS: 2.04 Total: 0.49 kcal Total: -30.27 0.23 -30.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_4549614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.380 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds