Wall clock time and date at job start Tue Mar 9 2021 13:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86293 * 109.47562 * 2 1 4 4 C 1.50696 * 109.46983 * 239.99583 * 2 1 3 5 5 C 1.38243 * 119.94672 * 120.23690 * 4 2 1 6 6 C 1.38166 * 120.05887 * 180.27735 * 5 4 2 7 7 C 1.38706 * 119.94172 * 359.74301 * 6 5 4 8 8 O 1.35900 * 120.05162 * 179.97438 * 7 6 5 9 9 C 1.42897 * 117.00281 * 0.02992 * 8 7 6 10 10 C 1.50703 * 109.47440 * 179.97438 * 9 8 7 11 11 O 1.21290 * 119.99478 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00341 * 179.97438 * 10 9 8 13 13 C 1.46507 * 120.00021 * 179.97438 * 12 10 9 14 14 H 1.08997 * 112.84684 * 334.66202 * 13 12 10 15 15 C 1.53775 * 113.61188 * 105.86270 * 13 12 10 16 16 C 1.53963 * 87.01614 * 139.95185 * 15 13 12 17 17 H 1.08999 * 113.61348 * 89.19935 * 16 15 13 18 18 C 1.52998 * 113.66621 * 220.06763 * 16 15 13 19 19 N 1.46507 * 109.47038 * 272.55735 * 18 16 15 20 20 C 1.36886 * 126.39465 * 89.99811 * 19 18 16 21 21 C 1.34669 * 106.81429 * 179.97438 * 20 19 18 22 22 N 1.34123 * 108.02222 * 0.02562 * 21 20 19 23 23 C 1.30504 * 109.25456 * 359.72247 * 22 21 20 24 24 C 1.53779 * 87.11211 * 334.63656 * 16 15 13 25 25 C 1.38746 * 119.89054 * 0.02562 * 7 6 5 26 26 N 1.48002 * 120.02857 * 180.02562 * 25 7 6 27 27 O 1.21803 * 120.00399 * 179.97438 * 26 25 7 28 28 O 1.21799 * 119.99893 * 359.97249 * 26 25 7 29 29 C 1.38126 * 119.94576 * 359.97438 * 25 7 6 30 30 H 0.96698 * 113.99537 * 300.00063 * 1 2 3 31 31 H 1.09003 * 109.46930 * 119.99981 * 2 1 3 32 32 H 1.48503 * 110.00275 * 178.68054 * 3 2 1 33 33 H 1.48500 * 109.99974 * 299.99709 * 3 2 1 34 34 H 1.08008 * 119.96972 * 0.04813 * 5 4 2 35 35 H 1.08006 * 120.02888 * 179.72594 * 6 5 4 36 36 H 1.09002 * 109.46955 * 299.99040 * 9 8 7 37 37 H 1.08997 * 109.47429 * 59.99669 * 9 8 7 38 38 H 0.96998 * 119.99891 * 359.97438 * 12 10 9 39 39 H 1.09002 * 113.61332 * 254.52410 * 15 13 12 40 40 H 1.09001 * 113.61771 * 25.43659 * 15 13 12 41 41 H 1.09002 * 109.47488 * 32.55776 * 18 16 15 42 42 H 1.09001 * 109.47312 * 152.56050 * 18 16 15 43 43 H 1.07997 * 126.59071 * 0.03938 * 20 19 18 44 44 H 1.07996 * 125.98717 * 179.97438 * 21 20 19 45 45 H 1.08002 * 125.65027 * 180.29382 * 23 22 21 46 46 H 1.09008 * 113.61378 * 270.81522 * 24 16 15 47 47 H 1.08997 * 113.69573 * 139.92128 * 24 16 15 48 48 H 1.08002 * 119.97098 * 179.97438 * 29 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7563 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7300 -0.0391 -2.1372 6 6 3.1871 -0.6866 -3.2690 7 6 2.8483 -2.0129 -3.4922 8 8 3.2962 -2.6518 -4.6049 9 6 4.1127 -1.8967 -5.5022 10 6 4.5122 -2.7636 -6.6684 11 8 4.1352 -3.9150 -6.7252 12 7 5.2884 -2.2595 -7.6481 13 6 5.6772 -3.1026 -8.7815 14 1 5.6761 -4.1651 -8.5386 15 6 4.9303 -2.7674 -10.0832 16 6 6.2680 -2.9879 -10.8129 17 1 6.4289 -4.0190 -11.1274 18 6 6.5313 -1.9775 -11.9312 19 7 5.9323 -2.4615 -13.1776 20 6 4.6615 -2.2094 -13.6195 21 6 4.5275 -2.8412 -14.8012 22 7 5.6846 -3.4625 -15.0731 23 6 6.5326 -3.2349 -14.1076 24 6 6.9607 -2.6332 -9.4866 25 6 2.0505 -2.6860 -2.5782 26 7 1.6876 -4.1015 -2.8130 27 8 0.9876 -4.6921 -2.0101 28 8 2.0889 -4.6759 -3.8093 29 6 1.5961 -2.0343 -1.4483 30 1 -0.3932 0.4417 0.7651 31 1 1.7923 -0.5138 0.8900 32 1 3.5347 1.7701 0.0321 33 1 1.5617 2.4678 -1.2085 34 1 2.9940 0.9936 -1.9627 35 1 3.8075 -0.1602 -3.9794 36 1 3.5527 -1.0347 -5.8650 37 1 5.0068 -1.5557 -4.9803 38 1 5.5896 -1.3386 -7.6028 39 1 4.1631 -3.4957 -10.3464 40 1 4.5724 -1.7388 -10.1289 41 1 6.0898 -1.0172 -11.6648 42 1 7.6062 -1.8580 -12.0672 43 1 3.9111 -1.6168 -13.1174 44 1 3.6430 -2.8473 -15.4208 45 1 7.5459 -3.6055 -14.0593 46 1 7.1589 -1.5677 -9.3688 47 1 7.8306 -3.2523 -9.2675 48 1 0.9747 -2.5577 -0.7367 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_4549638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:29 Heat of formation + Delta-G solvation = 29.274694 kcal Electronic energy + Delta-G solvation = -34752.224505 eV Core-core repulsion = 29780.535031 eV Total energy + Delta-G solvation = -4971.689475 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.151 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.39324 -42.95292 -41.90777 -41.14476 -39.92730 -39.11114 -37.66573 -37.40801 -35.49839 -34.13035 -33.62748 -32.44707 -30.50784 -30.18534 -28.50653 -27.92960 -26.77254 -26.59206 -24.65005 -23.77719 -22.79675 -22.27829 -21.95640 -21.64722 -20.74631 -20.53603 -19.87903 -19.27308 -18.75671 -18.63485 -18.42644 -18.26548 -17.68638 -17.59794 -17.13062 -16.57564 -16.42686 -16.07199 -15.95820 -15.84309 -15.43357 -15.21359 -15.17355 -14.86852 -14.54403 -14.39661 -14.21981 -14.16814 -13.93715 -13.85660 -13.55901 -13.45693 -13.05072 -12.92213 -12.78160 -12.71937 -12.46484 -12.35177 -12.32517 -12.22909 -12.00016 -11.97734 -11.48654 -11.08802 -10.99476 -10.92318 -10.50257 -10.43799 -10.18207 -9.86044 -9.45382 -4.89523 -1.42792 -0.37480 0.03212 0.23831 1.09728 1.16776 1.26851 1.36129 1.67711 1.88710 1.91434 1.92726 2.22430 2.26120 2.96470 3.06756 3.23109 3.33875 3.44655 3.46182 3.48480 3.53754 3.67288 3.72572 3.79724 3.88848 3.91578 3.92206 4.02168 4.12092 4.15280 4.19866 4.22435 4.38931 4.41382 4.47963 4.58121 4.67117 4.68172 4.70820 4.76540 4.79767 4.92062 4.93853 5.01208 5.09118 5.12408 5.34863 5.47313 5.63254 5.82053 6.32229 6.35376 6.39184 6.85162 7.09625 7.15946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.568 6.568 2 C -0.089 4.089 3 Si 0.779 3.221 4 C -0.117 4.117 5 C -0.027 4.027 6 C -0.188 4.188 7 C 0.193 3.807 8 O -0.289 6.289 9 C 0.022 3.978 10 C 0.508 3.492 11 O -0.567 6.567 12 N -0.695 5.695 13 C 0.115 3.885 14 H 0.083 0.917 15 C -0.145 4.145 16 C -0.119 4.119 17 H 0.084 0.916 18 C 0.115 3.885 19 N -0.453 5.453 20 C -0.045 4.045 21 C -0.069 4.069 22 N -0.548 5.548 23 C 0.173 3.827 24 C -0.111 4.111 25 C -0.101 4.101 26 N 0.034 4.966 27 O -0.190 6.190 28 O -0.174 6.174 29 C 0.002 3.998 30 H 0.407 0.593 31 H 0.098 0.902 32 H -0.269 1.269 33 H -0.282 1.282 34 H 0.164 0.836 35 H 0.204 0.796 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.425 0.575 39 H 0.045 0.955 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.197 0.803 44 H 0.169 0.831 45 H 0.228 0.772 46 H 0.125 0.875 47 H 0.086 0.914 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.917 17.403 7.093 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.379 6.379 2 C -0.197 4.197 3 Si 0.681 3.319 4 C -0.118 4.118 5 C -0.044 4.044 6 C -0.207 4.207 7 C 0.143 3.857 8 O -0.199 6.199 9 C -0.055 4.055 10 C 0.294 3.706 11 O -0.444 6.444 12 N -0.349 5.349 13 C 0.010 3.990 14 H 0.101 0.899 15 C -0.184 4.184 16 C -0.139 4.139 17 H 0.102 0.898 18 C -0.006 4.006 19 N -0.135 5.135 20 C -0.179 4.179 21 C -0.216 4.216 22 N -0.267 5.267 23 C -0.110 4.110 24 C -0.150 4.150 25 C -0.186 4.186 26 N 0.546 4.454 27 O -0.401 6.401 28 O -0.387 6.387 29 C -0.017 4.017 30 H 0.259 0.741 31 H 0.116 0.884 32 H -0.195 1.195 33 H -0.209 1.209 34 H 0.180 0.820 35 H 0.221 0.779 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.264 0.736 39 H 0.064 0.936 40 H 0.127 0.873 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.214 0.786 44 H 0.186 0.814 45 H 0.244 0.756 46 H 0.143 0.857 47 H 0.104 0.896 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.568 16.867 5.568 19.308 hybrid contribution -0.642 -1.028 0.225 1.233 sum 6.926 15.839 5.793 18.232 Atomic orbital electron populations 1.86444 1.17136 1.82709 1.51597 1.25034 0.86222 1.12404 0.96016 0.93405 0.78108 0.74250 0.86125 1.19697 1.00776 0.92399 0.98959 1.21499 0.91643 1.00186 0.91100 1.21686 1.06215 0.90980 1.01782 1.18854 0.89884 0.91732 0.85186 1.86478 1.63792 1.39688 1.29926 1.23162 0.98093 0.94653 0.89567 1.20500 0.78671 0.87530 0.83941 1.90859 1.54776 1.20390 1.78411 1.45595 1.51235 1.16688 1.21381 1.22470 0.97038 0.95665 0.83862 0.89889 1.23616 0.96729 1.03022 0.95015 1.22688 0.97182 0.99917 0.94120 0.89757 1.22204 1.01175 0.97844 0.79369 1.45759 1.11226 1.38225 1.18268 1.23069 0.88952 1.07311 0.98530 1.22614 0.97848 1.02707 0.98438 1.70235 1.03226 1.24904 1.28298 1.25518 1.01157 0.97734 0.86560 1.23291 0.95739 1.04435 0.91524 1.20879 1.12973 0.81969 1.02800 1.43806 0.98344 1.03717 0.99584 1.94497 1.35541 1.67961 1.42054 1.94685 1.56654 1.69174 1.18156 1.20892 0.93642 0.94459 0.92750 0.74068 0.88381 1.19520 1.20851 0.81952 0.77898 0.84117 0.83868 0.73628 0.93616 0.87346 0.86603 0.86168 0.78611 0.81361 0.75570 0.85659 0.89575 0.82180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 2.59 12.74 -148.98 -1.90 0.69 16 2 C -0.09 0.59 2.81 71.23 0.20 0.79 16 3 Si 0.78 -8.19 29.78 68.60 2.04 -6.15 16 4 C -0.12 0.16 5.42 -19.85 -0.11 0.05 16 5 C -0.03 0.14 8.66 22.25 0.19 0.34 16 6 C -0.19 1.21 9.04 22.36 0.20 1.42 16 7 C 0.19 0.61 6.67 22.50 0.15 0.76 16 8 O -0.29 -1.71 7.68 -63.40 -0.49 -2.20 16 9 C 0.02 -0.15 5.22 71.24 0.37 0.23 16 10 C 0.51 0.34 7.91 87.66 0.69 1.03 16 11 O -0.57 -8.59 16.12 15.98 0.26 -8.33 16 12 N -0.69 5.81 5.36 -440.03 -2.36 3.45 16 13 C 0.11 -0.63 4.21 45.52 0.19 -0.43 16 14 H 0.08 0.21 7.50 -2.39 -0.02 0.19 16 15 C -0.15 0.91 7.45 31.18 0.23 1.14 16 16 C -0.12 1.12 3.96 -10.21 -0.04 1.08 16 17 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 18 C 0.12 -1.30 5.99 86.38 0.52 -0.79 16 19 N -0.45 1.11 2.75 -529.05 -1.46 -0.34 16 20 C -0.04 -0.02 11.58 83.09 0.96 0.94 16 21 C -0.07 -0.48 11.87 83.52 0.99 0.51 16 22 N -0.55 -5.73 11.25 -200.32 -2.25 -7.99 16 23 C 0.17 0.42 12.56 180.26 2.26 2.68 16 24 C -0.11 1.44 7.39 31.12 0.23 1.67 16 25 C -0.10 -0.92 6.87 36.47 0.25 -0.67 16 26 N 0.03 0.60 4.45 -46.25 -0.21 0.39 16 27 O -0.19 -3.58 18.45 18.88 0.35 -3.23 16 28 O -0.17 -3.90 17.24 25.61 0.44 -3.46 16 29 C 0.00 0.01 9.11 22.26 0.20 0.21 16 30 H 0.41 -6.01 8.74 -74.06 -0.65 -6.66 16 31 H 0.10 -0.97 7.96 -2.39 -0.02 -0.99 16 32 H -0.27 1.99 7.11 99.48 0.71 2.69 16 33 H -0.28 1.31 7.11 99.48 0.71 2.02 16 34 H 0.16 -1.62 4.87 -2.91 -0.01 -1.63 16 35 H 0.20 -3.42 6.30 -2.91 -0.02 -3.44 16 36 H 0.14 -2.10 7.66 -2.39 -0.02 -2.12 16 37 H 0.14 -2.20 7.66 -2.39 -0.02 -2.22 16 38 H 0.42 -7.58 8.71 -92.71 -0.81 -8.39 16 39 H 0.04 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.11 -1.14 7.90 -2.39 -0.02 -1.16 16 41 H 0.12 -1.76 7.85 -2.39 -0.02 -1.78 16 42 H 0.12 -1.81 8.14 -2.39 -0.02 -1.83 16 43 H 0.20 -1.14 8.06 -2.91 -0.02 -1.17 16 44 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 45 H 0.23 -1.06 8.06 -2.91 -0.02 -1.09 16 46 H 0.13 -2.38 8.07 -2.38 -0.02 -2.40 16 47 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16 48 H 0.16 0.70 7.61 -2.91 -0.02 0.68 16 Total: 0.00 -47.79 414.36 1.56 -46.23 By element: Atomic # 1 Polarization: -29.65 SS G_CDS: -0.37 Total: -30.03 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 7.50 Total: 10.97 kcal Atomic # 7 Polarization: 1.79 SS G_CDS: -6.27 Total: -4.49 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -1.34 Total: -16.54 kcal Atomic # 14 Polarization: -8.19 SS G_CDS: 2.04 Total: -6.15 kcal Total: -47.79 1.56 -46.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_4549638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.506 kcal (2) G-P(sol) polarization free energy of solvation -47.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds