Wall clock time and date at job start Tue Mar 9 2021 13:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86311 * 109.46756 * 2 1 4 4 C 1.50697 * 109.47393 * 240.00388 * 2 1 3 5 5 C 1.35456 * 125.56737 * 119.96868 * 4 2 1 6 6 C 1.39831 * 107.86488 * 180.02562 * 5 4 2 7 7 C 1.37871 * 107.09089 * 0.02562 * 6 5 4 8 8 C 1.46675 * 126.23727 * 179.97438 * 7 6 5 9 9 O 1.21689 * 120.00032 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00119 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00466 * 179.97438 * 10 8 7 12 12 H 1.09001 * 112.84674 * 23.80211 * 11 10 8 13 13 C 1.53776 * 113.61794 * 154.99759 * 11 10 8 14 14 C 1.53781 * 87.08274 * 140.06604 * 13 11 10 15 15 H 1.08999 * 113.61361 * 89.19657 * 14 13 11 16 16 C 1.52999 * 113.61564 * 220.01823 * 14 13 11 17 17 N 1.46496 * 109.47130 * 183.47035 * 16 14 13 18 18 C 1.36880 * 126.39785 * 89.99667 * 17 16 14 19 19 C 1.34674 * 106.82015 * 179.73791 * 18 17 16 20 20 N 1.34130 * 108.01710 * 0.23538 * 19 18 17 21 21 C 1.30496 * 109.26014 * 359.97438 * 20 19 18 22 22 C 1.53784 * 87.17322 * 334.60939 * 14 13 11 23 23 N 1.35531 * 125.56313 * 300.28489 * 4 2 1 24 24 H 0.96702 * 114.00364 * 60.00024 * 1 2 3 25 25 H 1.08993 * 109.47431 * 119.99952 * 2 1 3 26 26 H 1.48496 * 109.99796 * 60.00296 * 3 2 1 27 27 H 1.48498 * 109.99788 * 181.31977 * 3 2 1 28 28 H 1.08004 * 126.06576 * 0.02562 * 5 4 2 29 29 H 1.08006 * 126.45472 * 179.97438 * 6 5 4 30 30 H 0.97003 * 119.99870 * 359.97438 * 10 8 7 31 31 H 1.09004 * 113.61147 * 25.51919 * 13 11 10 32 32 H 1.09003 * 113.61426 * 254.61618 * 13 11 10 33 33 H 1.09003 * 109.46925 * 63.47085 * 16 14 13 34 34 H 1.08997 * 109.47224 * 303.47355 * 16 14 13 35 35 H 1.08002 * 126.59253 * 0.02562 * 18 17 16 36 36 H 1.07997 * 125.99347 * 180.23004 * 19 18 17 37 37 H 1.07999 * 125.65629 * 180.02562 * 21 20 19 38 38 H 1.09000 * 113.61486 * 139.93283 * 22 14 13 39 39 H 1.08991 * 113.61455 * 270.84153 * 22 14 13 40 40 H 0.97005 * 125.67802 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 2.7130 -0.1633 -2.1921 6 6 2.9563 -1.1454 -3.1572 7 6 2.3014 -2.2873 -2.7474 8 6 2.2773 -3.5733 -3.4524 9 8 2.8757 -3.7019 -4.5042 10 7 1.5924 -4.6125 -2.9353 11 6 1.5678 -5.8968 -3.6396 12 1 2.4221 -6.0322 -4.3030 13 6 1.3068 -7.0999 -2.7181 14 6 0.4159 -7.6640 -3.8375 15 1 0.9550 -8.2836 -4.5542 16 6 -0.8657 -8.3251 -3.3264 17 7 -1.6016 -8.9008 -4.4547 18 6 -1.4673 -10.1701 -4.9492 19 6 -2.3310 -10.2815 -5.9765 20 7 -2.9715 -9.1105 -6.1089 21 6 -2.5379 -8.2778 -5.2025 22 6 0.2162 -6.2128 -4.3056 23 7 1.6700 -1.9990 -1.5586 24 1 -0.3934 0.4417 -0.7650 25 1 1.7924 -0.5138 0.8899 26 1 1.5614 2.4679 1.2085 27 1 3.5345 1.7705 -0.0321 28 1 3.0826 0.8514 -2.2101 29 1 3.5456 -1.0307 -4.0551 30 1 1.1157 -4.5101 -2.0967 31 1 0.7590 -6.8444 -1.8111 32 1 2.1950 -7.7008 -2.5223 33 1 -1.4865 -7.5789 -2.8305 34 1 -0.6104 -9.1137 -2.6187 35 1 -0.8005 -10.9366 -4.5828 36 1 -2.4816 -11.1598 -6.5867 37 1 -2.8747 -7.2603 -5.0698 38 1 0.2252 -6.0985 -5.3896 39 1 -0.6303 -5.7144 -3.8334 40 1 1.1296 -2.6162 -1.0410 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14468608_6580494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:03 Heat of formation + Delta-G solvation = 70.304924 kcal Electronic energy + Delta-G solvation = -23638.210117 eV Core-core repulsion = 20036.336323 eV Total energy + Delta-G solvation = -3601.873794 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.95795 -42.54153 -40.96828 -39.38616 -37.66313 -35.53075 -34.13304 -32.15577 -31.37857 -30.39520 -28.89318 -26.95555 -26.75511 -24.50719 -22.87497 -22.27858 -21.80740 -21.45657 -21.38279 -20.75266 -19.67517 -18.49222 -18.07685 -17.37983 -16.69726 -16.56765 -16.18678 -16.01023 -15.89254 -15.35950 -15.19348 -15.12002 -14.83735 -14.61064 -14.42462 -14.22317 -14.05339 -14.00002 -13.72914 -13.54893 -13.45104 -13.01661 -12.31590 -12.20621 -12.06584 -12.01754 -11.55507 -11.32099 -10.91618 -10.67410 -10.51359 -10.25011 -10.08348 -9.45117 -9.28222 -4.90561 0.27372 1.14582 1.22995 1.52756 1.72565 1.87657 1.92553 2.02471 2.21268 2.22974 2.24050 3.32841 3.42709 3.47366 3.58495 3.65330 3.69108 3.79791 3.88036 4.04789 4.10137 4.16721 4.24601 4.31571 4.40259 4.45402 4.60368 4.64687 4.69123 4.73828 4.79720 4.89607 4.95209 4.98468 5.09107 5.11756 5.34490 5.43766 5.58255 5.77617 5.82589 6.26894 6.31497 6.44914 6.67592 7.01603 7.16101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.051 4.051 3 Si 0.800 3.200 4 C 0.031 3.969 5 C -0.207 4.207 6 C -0.120 4.120 7 C -0.064 4.064 8 C 0.588 3.412 9 O -0.574 6.574 10 N -0.704 5.704 11 C 0.114 3.886 12 H 0.091 0.909 13 C -0.117 4.117 14 C -0.116 4.116 15 H 0.088 0.912 16 C 0.115 3.885 17 N -0.453 5.453 18 C -0.048 4.048 19 C -0.067 4.067 20 N -0.547 5.547 21 C 0.176 3.824 22 C -0.145 4.145 23 N -0.510 5.510 24 H 0.399 0.601 25 H 0.118 0.882 26 H -0.296 1.296 27 H -0.287 1.287 28 H 0.167 0.833 29 H 0.143 0.857 30 H 0.411 0.589 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.200 0.800 36 H 0.171 0.829 37 H 0.223 0.777 38 H 0.052 0.948 39 H 0.105 0.895 40 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.656 1.381 7.352 7.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.161 4.161 3 Si 0.704 3.296 4 C -0.088 4.088 5 C -0.231 4.231 6 C -0.146 4.146 7 C -0.178 4.178 8 C 0.377 3.623 9 O -0.453 6.453 10 N -0.355 5.355 11 C 0.010 3.990 12 H 0.110 0.890 13 C -0.155 4.155 14 C -0.136 4.136 15 H 0.107 0.893 16 C -0.006 4.006 17 N -0.135 5.135 18 C -0.182 4.182 19 C -0.214 4.214 20 N -0.266 5.266 21 C -0.107 4.107 22 C -0.183 4.183 23 N -0.107 5.107 24 H 0.250 0.750 25 H 0.136 0.864 26 H -0.223 1.223 27 H -0.213 1.213 28 H 0.184 0.816 29 H 0.161 0.839 30 H 0.248 0.752 31 H 0.136 0.864 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.217 0.783 36 H 0.189 0.811 37 H 0.240 0.760 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -0.302 1.618 7.178 7.364 hybrid contribution 0.431 -1.143 0.779 1.448 sum 0.129 0.475 7.957 7.972 Atomic orbital electron populations 1.86472 1.16737 1.82100 1.50836 1.24993 0.85422 1.10962 0.94769 0.92983 0.77869 0.74076 0.84656 1.21330 1.02875 0.85153 0.99463 1.20941 1.05397 1.01193 0.95538 1.21494 1.00931 0.91619 1.00604 1.20288 1.08982 0.96257 0.92290 1.17297 0.78241 0.82929 0.83847 1.90850 1.46536 1.83658 1.24273 1.45713 1.52254 1.10932 1.26553 1.22558 0.98602 0.81966 0.95918 0.89041 1.23305 1.00350 0.94423 0.97429 1.22636 0.96140 0.95502 0.99272 0.89330 1.22177 0.92070 1.00376 0.86009 1.45750 1.30555 1.10928 1.26279 1.23154 1.05720 0.89087 1.00242 1.22640 0.99594 0.97561 1.01607 1.70237 1.28417 1.03367 1.24583 1.25404 0.93043 1.00768 0.91473 1.23610 0.98102 0.95829 1.00792 1.41847 1.39432 1.11377 1.18072 0.75039 0.86447 1.22324 1.21335 0.81595 0.83887 0.75169 0.86398 0.89547 0.86475 0.86735 0.78272 0.81129 0.76039 0.92902 0.87676 0.73146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 3.46 12.88 -148.98 -1.92 1.54 16 2 C -0.05 0.32 3.08 71.24 0.22 0.54 16 3 Si 0.80 -4.84 30.54 68.60 2.10 -2.75 16 4 C 0.03 -0.12 6.47 41.34 0.27 0.15 16 5 C -0.21 0.32 9.32 22.01 0.21 0.52 16 6 C -0.12 -0.38 10.65 22.57 0.24 -0.14 16 7 C -0.06 -0.11 7.06 40.35 0.28 0.18 16 8 C 0.59 2.54 7.79 86.45 0.67 3.21 16 9 O -0.57 -7.96 16.48 -4.31 -0.07 -8.03 16 10 N -0.70 3.01 5.36 -443.73 -2.38 0.63 16 11 C 0.11 -0.47 4.24 45.58 0.19 -0.28 16 12 H 0.09 0.20 7.46 -2.39 -0.02 0.18 16 13 C -0.12 1.30 7.40 31.12 0.23 1.53 16 14 C -0.12 1.02 3.96 -10.27 -0.04 0.98 16 15 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 16 C 0.11 -1.20 5.97 86.38 0.52 -0.68 16 17 N -0.45 1.00 2.75 -529.07 -1.46 -0.45 16 18 C -0.05 -0.01 11.58 83.09 0.96 0.95 16 19 C -0.07 -0.43 11.87 83.52 0.99 0.56 16 20 N -0.55 -5.61 11.25 -200.30 -2.25 -7.87 16 21 C 0.18 0.45 12.56 180.26 2.26 2.72 16 22 C -0.14 0.83 7.45 31.18 0.23 1.06 16 23 N -0.51 2.33 5.99 -171.93 -1.03 1.30 16 24 H 0.40 -5.25 8.70 -74.06 -0.64 -5.89 16 25 H 0.12 -0.74 7.96 -2.39 -0.02 -0.76 16 26 H -0.30 -0.35 7.11 99.48 0.71 0.36 16 27 H -0.29 0.07 7.11 99.48 0.71 0.78 16 28 H 0.17 -0.92 6.17 -2.91 -0.02 -0.94 16 29 H 0.14 0.61 8.06 -2.91 -0.02 0.59 16 30 H 0.41 -4.65 7.86 -92.71 -0.73 -5.37 16 31 H 0.12 -1.90 8.08 -2.38 -0.02 -1.92 16 32 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 33 H 0.12 -1.67 7.88 -2.39 -0.02 -1.69 16 34 H 0.11 -1.54 8.14 -2.39 -0.02 -1.56 16 35 H 0.20 -1.27 8.06 -2.91 -0.02 -1.29 16 36 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 37 H 0.22 -0.87 8.06 -2.91 -0.02 -0.90 16 38 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.10 -0.96 7.92 -2.39 -0.02 -0.98 16 40 H 0.43 -4.41 8.19 -92.70 -0.76 -5.17 16 Total: 0.00 -28.96 343.87 -0.77 -29.73 By element: Atomic # 1 Polarization: -24.40 SS G_CDS: -1.00 Total: -25.40 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 7.24 Total: 11.29 kcal Atomic # 7 Polarization: 0.73 SS G_CDS: -7.12 Total: -6.39 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -1.99 Total: -6.49 kcal Atomic # 14 Polarization: -4.84 SS G_CDS: 2.10 Total: -2.75 kcal Total: -28.96 -0.77 -29.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14468608_6580494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.039 kcal (2) G-P(sol) polarization free energy of solvation -28.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds