Wall clock time and date at job start Tue Mar 9 2021 13:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37652 * 125.67724 * 2 1 4 4 C 1.46678 * 126.23531 * 0.02562 * 3 2 1 5 5 O 1.21695 * 120.00237 * 355.56503 * 4 3 2 6 6 N 1.34777 * 120.00341 * 175.55826 * 4 3 2 7 7 N 1.40095 * 120.00397 * 185.76837 * 6 4 3 8 8 C 1.34777 * 120.00397 * 179.97438 * 7 6 4 9 9 O 1.21283 * 119.99832 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.00140 * 179.97438 * 8 7 6 11 11 H 1.08993 * 112.85264 * 311.19920 * 10 8 7 12 12 C 1.53788 * 113.61309 * 82.50647 * 10 8 7 13 13 C 1.53774 * 87.07905 * 139.97893 * 12 10 8 14 14 H 1.09006 * 113.69494 * 89.12874 * 13 12 10 15 15 N 1.46502 * 113.61455 * 220.01433 * 13 12 10 16 16 C 1.34773 * 120.00367 * 252.50018 * 15 13 12 17 17 O 1.21508 * 119.99927 * 0.02562 * 16 15 13 18 18 O 1.34637 * 120.00277 * 179.97438 * 16 15 13 19 19 C 1.45201 * 117.00014 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47235 * 59.99937 * 19 18 16 21 21 C 1.53005 * 109.47042 * 180.02562 * 19 18 16 22 22 C 1.53004 * 109.47025 * 299.99989 * 19 18 16 23 23 C 1.53774 * 87.08529 * 334.56612 * 13 12 10 24 24 C 1.37874 * 107.53268 * 180.28006 * 3 2 1 25 25 C 1.39831 * 107.08598 * 359.74409 * 24 3 2 26 26 C 1.35458 * 107.86317 * 0.02562 * 25 24 3 27 27 C 1.50702 * 125.56136 * 180.02562 * 26 25 24 28 28 O 1.42901 * 109.46772 * 210.02328 * 27 26 25 29 29 Si 1.86301 * 109.47313 * 330.01899 * 27 26 25 30 30 H 1.08997 * 109.47037 * 264.20767 * 1 2 3 31 31 H 1.08998 * 109.47429 * 24.20444 * 1 2 3 32 32 H 1.08995 * 109.47319 * 144.20564 * 1 2 3 33 33 H 0.97003 * 119.99744 * 5.76252 * 6 4 3 34 34 H 0.96998 * 119.99890 * 0.02562 * 7 6 4 35 35 H 1.09001 * 113.61061 * 254.52665 * 12 10 8 36 36 H 1.08994 * 113.61309 * 25.42587 * 12 10 8 37 37 H 0.97006 * 119.99990 * 72.49573 * 15 13 12 38 38 H 1.08999 * 109.46757 * 60.00377 * 20 19 18 39 39 H 1.09003 * 109.46806 * 179.97438 * 20 19 18 40 40 H 1.08992 * 109.47477 * 300.00197 * 20 19 18 41 41 H 1.08997 * 109.47398 * 59.99485 * 21 19 18 42 42 H 1.08991 * 109.47284 * 179.97438 * 21 19 18 43 43 H 1.09011 * 109.46494 * 299.99853 * 21 19 18 44 44 H 1.09004 * 109.47207 * 60.00153 * 22 19 18 45 45 H 1.09000 * 109.46983 * 180.02562 * 22 19 18 46 46 H 1.08997 * 109.47086 * 300.00314 * 22 19 18 47 47 H 1.09001 * 113.61754 * 270.88658 * 23 13 12 48 48 H 1.09003 * 113.61766 * 139.98397 * 23 13 12 49 49 H 1.08005 * 126.45782 * 179.70603 * 24 3 2 50 50 H 1.07993 * 126.06989 * 180.02562 * 25 24 3 51 51 H 1.08998 * 109.47562 * 90.02559 * 27 26 25 52 52 H 0.96700 * 114.00637 * 59.99586 * 28 27 26 53 53 H 1.48501 * 109.99668 * 58.68174 * 29 27 26 54 54 H 1.48492 * 110.00008 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1182 0.0000 4 6 1.8124 2.5125 0.0005 5 8 0.6247 2.7647 -0.0805 6 7 2.7094 3.5144 0.0909 7 7 2.2701 4.8390 0.2132 8 6 3.1670 5.8409 0.3040 9 8 4.3546 5.5957 0.2794 10 6 2.6944 7.2658 0.4350 11 1 1.9327 7.5283 -0.2991 12 6 2.3281 7.6635 1.8747 13 6 2.9966 9.0181 1.5869 14 1 2.3178 9.7615 1.1689 15 7 3.7839 9.5343 2.7095 16 6 3.3300 10.5819 3.4256 17 8 2.2675 11.0980 3.1406 18 8 4.0533 11.0559 4.4575 19 6 3.5027 12.1859 5.1844 20 6 2.1460 11.7993 5.7766 21 6 4.4580 12.5812 6.3123 22 6 3.3243 13.3683 4.2299 23 6 3.8392 8.2885 0.5275 24 6 3.5780 0.6888 -0.0064 25 6 3.5522 -0.7093 -0.0043 26 6 2.2555 -1.1009 0.0026 27 6 1.7709 -2.5279 0.0075 28 8 0.5100 -2.6050 -0.6605 29 14 3.0076 -3.6068 -0.8742 30 1 -0.3633 -0.1037 1.0224 31 1 -0.3634 0.9373 -0.4213 32 1 -0.3634 -0.8335 -0.6010 33 1 3.6592 3.3182 0.0713 34 1 1.3203 5.0351 0.2332 35 1 1.2544 7.7345 2.0483 36 1 2.8427 7.0752 2.6345 37 1 4.6318 9.1220 2.9373 38 1 2.2732 10.9570 6.4566 39 1 1.7329 12.6475 6.3226 40 1 1.4656 11.5180 4.9729 41 1 5.4244 12.8567 5.8901 42 1 4.0450 13.4297 6.8576 43 1 4.5855 11.7389 6.9924 44 1 2.6438 13.0870 3.4261 45 1 2.9114 14.2167 4.7757 46 1 4.2908 13.6437 3.8080 47 1 4.7669 7.8711 0.9190 48 1 3.9854 8.8641 -0.3865 49 1 4.4584 1.3144 -0.0126 50 1 4.4132 -1.3611 -0.0077 51 1 1.6586 -2.8700 1.0363 52 1 0.5350 -2.3153 -1.5827 53 1 4.3314 -3.5105 -0.2081 54 1 2.5411 -5.0165 -0.8767 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14472184_10803936.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:39 Heat of formation + Delta-G solvation = -67.409629 kcal Electronic energy + Delta-G solvation = -36570.334510 eV Core-core repulsion = 31512.518054 eV Total energy + Delta-G solvation = -5057.816457 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.198 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.73388 -42.04679 -41.53659 -40.41675 -39.21590 -37.83308 -37.76970 -36.57773 -35.37914 -34.20633 -33.97424 -32.94628 -31.03796 -28.37296 -28.31457 -27.76608 -27.45853 -26.79344 -26.44932 -24.01385 -23.43525 -22.43373 -21.83971 -21.39891 -20.84236 -20.29433 -19.26848 -19.14321 -18.82827 -18.48766 -17.85009 -17.38817 -17.20034 -17.09760 -16.69962 -16.66823 -16.24893 -16.12005 -15.80016 -15.62041 -15.51238 -15.39568 -15.19826 -14.93043 -14.88638 -14.62488 -14.44866 -14.38906 -13.82618 -13.73276 -13.54540 -13.38078 -13.24881 -13.11441 -13.07384 -12.93019 -12.87686 -12.62122 -12.57576 -12.46827 -12.34148 -12.20369 -12.19787 -12.04009 -11.77626 -11.51863 -11.40203 -11.15191 -11.10566 -10.69202 -10.19529 -9.82669 -9.70898 -9.15268 -4.90525 0.17687 0.49731 1.16009 1.16306 1.32115 1.54151 1.72031 1.72760 1.87438 2.08519 2.15527 2.82825 3.13974 3.22290 3.27593 3.35058 3.47250 3.51037 3.66676 3.73393 3.78818 3.79421 3.93597 3.95409 4.01834 4.23314 4.33197 4.39689 4.42168 4.50182 4.56024 4.60586 4.60791 4.67876 4.73534 4.75774 4.77589 4.83923 4.85824 4.86626 4.97081 4.97435 5.00421 5.06164 5.14565 5.26510 5.29710 5.39391 5.41565 5.46104 5.57598 5.72856 5.87979 6.05762 6.31927 6.37249 6.55862 6.65379 7.13684 7.31674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.396 5.396 3 C -0.076 4.076 4 C 0.595 3.405 5 O -0.572 6.572 6 N -0.511 5.511 7 N -0.514 5.514 8 C 0.530 3.470 9 O -0.565 6.565 10 C -0.114 4.114 11 H 0.156 0.844 12 C -0.134 4.134 13 C 0.140 3.860 14 H 0.123 0.877 15 N -0.692 5.692 16 C 0.644 3.356 17 O -0.591 6.591 18 O -0.372 6.372 19 C 0.127 3.873 20 C -0.180 4.180 21 C -0.139 4.139 22 C -0.180 4.180 23 C -0.115 4.115 24 C -0.122 4.122 25 C -0.212 4.212 26 C 0.023 3.977 27 C -0.056 4.056 28 O -0.552 6.552 29 Si 0.809 3.191 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.439 0.561 34 H 0.439 0.561 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.416 0.584 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.097 0.903 48 H 0.100 0.900 49 H 0.168 0.832 50 H 0.164 0.836 51 H 0.116 0.884 52 H 0.397 0.603 53 H -0.275 1.275 54 H -0.294 1.294 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.706 -0.494 -1.983 2.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.068 5.068 3 C -0.190 4.190 4 C 0.385 3.615 5 O -0.452 6.452 6 N -0.258 5.258 7 N -0.262 5.262 8 C 0.318 3.682 9 O -0.442 6.442 10 C -0.137 4.137 11 H 0.173 0.827 12 C -0.173 4.173 13 C 0.036 3.964 14 H 0.141 0.859 15 N -0.351 5.351 16 C 0.398 3.602 17 O -0.481 6.481 18 O -0.286 6.286 19 C 0.091 3.909 20 C -0.237 4.237 21 C -0.196 4.196 22 C -0.237 4.237 23 C -0.153 4.153 24 C -0.149 4.149 25 C -0.235 4.235 26 C -0.095 4.095 27 C -0.165 4.165 28 O -0.360 6.360 29 Si 0.711 3.289 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.140 0.860 33 H 0.283 0.717 34 H 0.283 0.717 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.252 0.748 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.080 0.920 47 H 0.115 0.885 48 H 0.119 0.881 49 H 0.186 0.814 50 H 0.181 0.819 51 H 0.133 0.867 52 H 0.247 0.753 53 H -0.201 1.201 54 H -0.221 1.221 Dipole moment (debyes) X Y Z Total from point charges 1.137 -0.994 -1.466 2.105 hybrid contribution -0.101 0.069 0.860 0.869 sum 1.036 -0.925 -0.606 1.515 Atomic orbital electron populations 1.22655 0.75185 1.06597 1.04330 1.43863 1.07325 1.03899 1.51760 1.19573 0.91353 0.86306 1.21808 1.17042 0.84815 0.83486 0.76204 1.90792 1.16859 1.84698 1.52899 1.44372 1.10600 0.95792 1.75085 1.45096 1.11396 0.94565 1.75179 1.21181 0.85386 0.86675 0.74944 1.90743 1.17410 1.84600 1.51416 1.22573 1.02239 0.87681 1.01209 0.82660 1.23495 1.03323 0.96166 0.94326 1.22557 0.94081 0.94482 0.85303 0.85932 1.44775 1.26072 1.31769 1.32436 1.18391 0.82005 0.80581 0.79207 1.90899 1.24039 1.61581 1.71631 1.86319 1.50652 1.49246 1.42407 1.22346 0.94624 0.82636 0.91296 1.22470 0.96410 1.03042 1.01777 1.21898 0.98977 1.02857 0.95847 1.22477 1.02924 0.97748 1.00570 1.23288 0.97380 0.94859 0.99791 1.21679 0.94393 0.95853 1.02932 1.20921 0.95572 0.95508 1.11519 1.21430 0.91039 0.89514 1.07566 1.25200 0.94531 0.93815 1.02906 1.86460 1.29933 1.88890 1.30715 0.92963 0.73544 0.74227 0.88130 0.91446 0.88965 0.86032 0.71686 0.71724 0.88504 0.89416 0.74760 0.92102 0.89504 0.91554 0.91215 0.88315 0.91308 0.91551 0.89503 0.91973 0.88472 0.88142 0.81442 0.81889 0.86692 0.75271 1.20055 1.22094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.06 10.30 127.77 1.32 1.37 16 2 N -0.40 -1.00 3.16 -519.71 -1.64 -2.64 16 3 C -0.08 -0.26 6.89 40.35 0.28 0.02 16 4 C 0.59 2.87 7.89 86.45 0.68 3.55 16 5 O -0.57 -5.32 14.39 -4.33 -0.06 -5.38 16 6 N -0.51 -0.76 6.24 -176.39 -1.10 -1.86 16 7 N -0.51 0.30 6.26 -173.53 -1.09 -0.78 16 8 C 0.53 -0.26 7.47 87.66 0.65 0.40 16 9 O -0.56 -3.44 15.74 -3.04 -0.05 -3.49 16 10 C -0.11 0.74 4.15 -11.01 -0.05 0.70 16 11 H 0.16 -1.83 8.14 -2.39 -0.02 -1.84 16 12 C -0.13 0.72 7.43 31.12 0.23 0.95 16 13 C 0.14 -0.49 4.24 45.51 0.19 -0.30 16 14 H 0.12 -0.27 7.46 -2.38 -0.02 -0.29 16 15 N -0.69 0.25 5.36 -567.63 -3.04 -2.79 16 16 C 0.64 3.73 8.06 129.79 1.05 4.78 16 17 O -0.59 -6.09 11.48 19.81 0.23 -5.86 16 18 O -0.37 -1.99 9.94 -55.46 -0.55 -2.54 16 19 C 0.13 0.35 1.13 -10.79 -0.01 0.34 16 20 C -0.18 -0.53 8.37 71.98 0.60 0.07 16 21 C -0.14 0.26 8.85 71.98 0.64 0.89 16 22 C -0.18 -0.51 8.37 71.98 0.60 0.10 16 23 C -0.11 0.62 7.16 31.12 0.22 0.84 16 24 C -0.12 0.02 10.36 22.57 0.23 0.26 16 25 C -0.21 0.17 9.37 22.01 0.21 0.38 16 26 C 0.02 0.00 6.15 41.35 0.25 0.25 16 27 C -0.06 0.17 2.99 71.24 0.21 0.38 16 28 O -0.55 2.00 10.11 -148.98 -1.51 0.49 16 29 Si 0.81 -4.24 31.29 68.60 2.15 -2.10 16 30 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.09 0.35 5.93 -2.39 -0.01 0.34 16 32 H 0.12 -0.37 5.24 -2.39 -0.01 -0.38 16 33 H 0.44 -0.15 6.90 -213.32 -1.47 -1.62 16 34 H 0.44 -1.24 8.01 -213.33 -1.71 -2.95 16 35 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 36 H 0.09 -0.31 8.09 -2.39 -0.02 -0.33 16 37 H 0.42 -1.44 8.84 -92.70 -0.82 -2.26 16 38 H 0.06 0.15 8.14 -2.39 -0.02 0.14 16 39 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.07 0.52 5.88 -2.39 -0.01 0.50 16 41 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 44 H 0.07 0.51 5.88 -2.38 -0.01 0.49 16 45 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 47 H 0.10 -0.29 7.41 -2.39 -0.02 -0.31 16 48 H 0.10 -0.72 8.14 -2.39 -0.02 -0.74 16 49 H 0.17 -0.85 7.45 -2.91 -0.02 -0.87 16 50 H 0.16 -0.64 6.62 -2.91 -0.02 -0.66 16 51 H 0.12 -0.23 7.96 -2.39 -0.02 -0.25 16 52 H 0.40 -4.29 8.29 -74.06 -0.61 -4.91 16 53 H -0.27 0.36 6.76 99.48 0.67 1.03 16 54 H -0.29 -0.51 7.11 99.48 0.71 0.19 16 Total: 0.00 -25.07 436.55 -2.97 -28.04 By element: Atomic # 1 Polarization: -12.44 SS G_CDS: -3.62 Total: -16.06 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 7.32 Total: 14.97 kcal Atomic # 7 Polarization: -1.21 SS G_CDS: -6.87 Total: -8.08 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -1.94 Total: -16.78 kcal Atomic # 14 Polarization: -4.24 SS G_CDS: 2.15 Total: -2.10 kcal Total: -25.07 -2.97 -28.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14472184_10803936.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.368 kcal (2) G-P(sol) polarization free energy of solvation -25.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds