Wall clock time and date at job start Tue Mar 9 2021 13:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47208 * 2 1 4 4 C 1.53000 * 109.46866 * 239.99551 * 2 1 3 5 5 O 1.45198 * 109.46761 * 120.00253 * 2 1 3 6 6 C 1.34632 * 117.00583 * 59.99639 * 5 2 1 7 7 O 1.21514 * 120.00045 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00292 * 179.97438 * 6 5 2 9 9 C 1.46500 * 120.00295 * 180.02562 * 8 6 5 10 10 H 1.09001 * 112.84676 * 23.80182 * 9 8 6 11 11 C 1.53787 * 113.61617 * 155.00004 * 9 8 6 12 12 C 1.53781 * 87.07982 * 140.06758 * 11 9 8 13 13 H 1.08989 * 113.61650 * 89.20019 * 12 11 9 14 14 C 1.50697 * 113.61197 * 220.02197 * 12 11 9 15 15 O 1.21278 * 120.00248 * 359.97438 * 14 12 11 16 16 N 1.34775 * 120.00072 * 179.97438 * 14 12 11 17 17 N 1.40102 * 120.00226 * 179.97438 * 16 14 12 18 18 C 1.34775 * 120.00226 * 179.97438 * 17 16 14 19 19 O 1.21593 * 119.99903 * 0.02562 * 18 17 16 20 20 C 1.47534 * 120.00019 * 180.02562 * 18 17 16 21 21 C 1.40144 * 120.18834 * 179.97438 * 20 18 17 22 22 O 1.35646 * 120.15121 * 0.02562 * 21 20 18 23 23 C 1.38715 * 119.69553 * 180.02562 * 21 20 18 24 24 C 1.38053 * 120.08783 * 0.02562 * 23 21 20 25 25 C 1.50699 * 119.80725 * 179.97438 * 24 23 21 26 26 O 1.42892 * 109.47249 * 300.00041 * 25 24 23 27 27 Si 1.86298 * 109.47032 * 179.97438 * 25 24 23 28 28 C 1.38558 * 120.38775 * 0.26678 * 24 23 21 29 29 C 1.37792 * 120.29868 * 359.45302 * 28 24 23 30 30 C 1.53777 * 113.69046 * 252.53744 * 9 8 6 31 31 H 1.08998 * 109.47394 * 300.00060 * 1 2 3 32 32 H 1.09005 * 109.46744 * 60.00151 * 1 2 3 33 33 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 34 34 H 1.08989 * 109.46991 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.46556 * 300.00051 * 3 2 1 36 36 H 1.08998 * 109.46992 * 59.99694 * 3 2 1 37 37 H 1.09000 * 109.47649 * 300.00338 * 4 2 1 38 38 H 1.09005 * 109.47196 * 60.00575 * 4 2 1 39 39 H 1.09001 * 109.46655 * 179.97438 * 4 2 1 40 40 H 0.97005 * 120.00244 * 0.02562 * 8 6 5 41 41 H 1.08998 * 113.61241 * 25.51903 * 11 9 8 42 42 H 1.08999 * 113.61038 * 254.61527 * 11 9 8 43 43 H 0.97001 * 119.99996 * 0.02562 * 16 14 12 44 44 H 0.96999 * 120.00106 * 0.02562 * 17 16 14 45 45 H 0.96710 * 114.00050 * 270.01901 * 22 21 20 46 46 H 1.07999 * 119.95572 * 180.02562 * 23 21 20 47 47 H 1.09004 * 109.46453 * 60.00109 * 25 24 23 48 48 H 0.96703 * 114.00176 * 299.99748 * 26 25 24 49 49 H 1.48506 * 109.99834 * 58.68765 * 27 25 24 50 50 H 1.48502 * 110.00011 * 180.02562 * 27 25 24 51 51 H 1.07993 * 119.84806 * 179.72957 * 28 24 23 52 52 H 1.07994 * 120.04509 * 180.29170 * 29 28 24 53 53 H 1.09000 * 113.61753 * 105.45899 * 30 9 8 54 54 H 1.08999 * 113.61417 * 334.55313 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0679 -2.6657 2.4167 9 6 1.6747 -4.0671 2.5827 10 1 1.4223 -4.5505 1.6389 11 6 2.6484 -4.8815 3.4509 12 6 1.4113 -5.5566 4.0663 13 1 1.0878 -6.4480 3.5290 14 6 1.5207 -5.7769 5.5530 15 8 2.5203 -5.4299 6.1456 16 7 0.5076 -6.3597 6.2243 17 7 0.6095 -6.5650 7.6064 18 6 -0.4037 -7.1472 8.2778 19 8 -1.4062 -7.4948 7.6838 20 6 -0.2966 -7.3629 9.7333 21 6 -1.3481 -7.9675 10.4354 22 8 -2.4695 -8.3579 9.7797 23 6 -1.2367 -8.1648 11.8039 24 6 -0.0950 -7.7665 12.4700 25 6 0.0190 -7.9834 13.9569 26 8 -1.0340 -7.2834 14.6225 27 14 1.6643 -7.3446 14.5533 28 6 0.9442 -7.1629 11.7804 29 6 0.8529 -6.9643 10.4199 30 6 0.6281 -4.2885 3.6874 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6766 -1.7490 -1.2492 38 1 1.6767 -0.2075 -2.1393 39 1 3.1300 -0.7209 -1.2494 40 1 2.6276 -2.2368 3.0829 41 1 3.2129 -4.2755 4.1596 42 1 3.2783 -5.5626 2.8789 43 1 -0.2918 -6.6376 5.7503 44 1 1.4090 -6.2874 8.0803 45 1 -3.1550 -7.6772 9.7331 46 1 -2.0443 -8.6307 12.3490 47 1 -0.0577 -9.0486 14.1755 48 1 -1.0277 -6.3282 14.4723 49 1 1.7949 -5.9005 14.2325 50 1 1.7894 -7.5533 16.0182 51 1 1.8316 -6.8508 12.3108 52 1 1.6673 -6.4978 9.8857 53 1 -0.3728 -4.4910 3.3065 54 1 0.6404 -3.5204 4.4608 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14472184_13422076.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:04 Heat of formation + Delta-G solvation = -134.348191 kcal Electronic energy + Delta-G solvation = -37962.725342 eV Core-core repulsion = 32676.061408 eV Total energy + Delta-G solvation = -5286.663933 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.187 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.13348 -41.83647 -41.29553 -40.14967 -39.21426 -38.51192 -37.76700 -37.27614 -36.44036 -35.37548 -34.18106 -33.60759 -31.77170 -31.15839 -28.36849 -28.31101 -27.88670 -26.95280 -26.77767 -24.15271 -23.99046 -23.48544 -22.51293 -21.93369 -21.37317 -20.59762 -19.65672 -19.22724 -19.01282 -18.87815 -18.26498 -18.10660 -17.42484 -17.19495 -16.92788 -16.85111 -16.65595 -16.43042 -16.22780 -16.09607 -15.99857 -15.69239 -15.47612 -15.35420 -15.22926 -14.97188 -14.81311 -14.55003 -14.38091 -13.81909 -13.76627 -13.53914 -13.37678 -13.30342 -13.11002 -13.00831 -12.92588 -12.87283 -12.59331 -12.55757 -12.45702 -12.40910 -12.33671 -12.22702 -12.19487 -11.77095 -11.68714 -11.39828 -11.36433 -11.11750 -11.05155 -10.69556 -10.19375 -10.18359 -9.89036 -9.52351 -4.90300 -0.52276 0.10265 0.62104 1.16160 1.22755 1.27992 1.61250 1.63441 1.72899 1.98498 2.47784 2.76923 3.05159 3.12939 3.22100 3.34500 3.37907 3.40570 3.57400 3.67152 3.69557 3.73802 3.79370 3.79968 3.93969 4.00131 4.04971 4.20549 4.39158 4.42639 4.56483 4.60869 4.60967 4.61462 4.68377 4.71756 4.73990 4.76202 4.84305 4.86294 4.87120 4.96371 4.97474 5.00600 5.02988 5.15057 5.20243 5.26861 5.30144 5.41187 5.45726 5.52648 5.58035 5.61287 6.32585 6.37819 6.45772 6.67244 6.69679 7.16032 7.32215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.644 3.356 7 O -0.591 6.591 8 N -0.691 5.691 9 C 0.139 3.861 10 H 0.122 0.878 11 C -0.114 4.114 12 C -0.116 4.116 13 H 0.154 0.846 14 C 0.530 3.470 15 O -0.565 6.565 16 N -0.517 5.517 17 N -0.519 5.519 18 C 0.562 3.438 19 O -0.551 6.551 20 C -0.173 4.173 21 C 0.164 3.836 22 O -0.495 6.495 23 C -0.136 4.136 24 C -0.065 4.065 25 C -0.090 4.090 26 O -0.546 6.546 27 Si 0.772 3.228 28 C -0.130 4.130 29 C -0.055 4.055 30 C -0.133 4.133 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.416 0.584 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.439 0.561 44 H 0.436 0.564 45 H 0.410 0.590 46 H 0.140 0.860 47 H 0.130 0.870 48 H 0.388 0.612 49 H -0.273 1.273 50 H -0.306 1.306 51 H 0.162 0.838 52 H 0.160 0.840 53 H 0.095 0.905 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.829 2.459 0.646 4.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.398 3.602 7 O -0.482 6.482 8 N -0.350 5.350 9 C 0.035 3.965 10 H 0.139 0.861 11 C -0.152 4.152 12 C -0.139 4.139 13 H 0.171 0.829 14 C 0.318 3.682 15 O -0.442 6.442 16 N -0.265 5.265 17 N -0.268 5.268 18 C 0.351 3.649 19 O -0.428 6.428 20 C -0.178 4.178 21 C 0.118 3.882 22 O -0.309 6.309 23 C -0.155 4.155 24 C -0.065 4.065 25 C -0.199 4.199 26 O -0.354 6.354 27 Si 0.677 3.323 28 C -0.147 4.147 29 C -0.073 4.073 30 C -0.172 4.172 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.253 0.747 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.282 0.718 44 H 0.281 0.719 45 H 0.270 0.730 46 H 0.158 0.842 47 H 0.147 0.853 48 H 0.238 0.762 49 H -0.199 1.199 50 H -0.234 1.234 51 H 0.179 0.821 52 H 0.178 0.822 53 H 0.114 0.886 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.023 1.732 0.789 4.451 hybrid contribution -1.336 1.167 0.450 1.829 sum 2.688 2.898 1.239 4.142 Atomic orbital electron populations 1.22474 0.93999 1.03790 1.03437 1.22345 0.94474 0.92526 0.81551 1.21894 1.02452 0.91024 1.04191 1.22477 1.01633 1.02340 0.97274 1.86315 1.71541 1.23464 1.47270 1.18395 0.78617 0.80756 0.82428 1.90903 1.42147 1.70852 1.44283 1.44763 1.54930 1.12281 1.23033 1.22554 0.96004 0.78742 0.99177 0.86059 1.23282 0.95747 0.98406 0.97814 1.22565 1.01002 1.01496 0.88802 0.82876 1.21129 0.81168 0.75775 0.90123 1.90729 1.31170 1.52043 1.70265 1.45122 1.22362 1.62540 0.96496 1.44800 1.21698 1.62595 0.97703 1.18352 0.82080 0.77244 0.87266 1.90841 1.30863 1.51502 1.69634 1.20075 0.98754 1.07444 0.91536 1.18620 0.87486 0.92409 0.89733 1.84720 1.26157 1.43022 1.76985 1.21350 0.99908 1.01991 0.92201 1.20519 0.93566 0.95785 0.96670 1.25404 1.02527 1.03055 0.88873 1.86605 1.50596 1.25323 1.72917 0.93976 0.78583 0.81037 0.78734 1.21218 0.99234 1.00052 0.94211 1.21447 0.95624 0.95649 0.94605 1.23489 0.99875 0.95422 0.98454 0.92058 0.89530 0.91579 0.91212 0.88341 0.91275 0.91567 0.89527 0.91969 0.74734 0.88365 0.88239 0.71810 0.71875 0.73003 0.84211 0.85259 0.76200 1.19918 1.23405 0.82059 0.82224 0.88599 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.48 8.37 71.98 0.60 0.13 16 2 C 0.13 0.31 1.13 -10.79 -0.01 0.30 16 3 C -0.14 0.31 8.85 71.98 0.64 0.94 16 4 C -0.18 -0.46 8.37 71.98 0.60 0.14 16 5 O -0.37 -1.83 9.94 -55.41 -0.55 -2.38 16 6 C 0.64 3.50 8.06 129.79 1.05 4.54 16 7 O -0.59 -5.96 11.48 19.80 0.23 -5.73 16 8 N -0.69 0.57 5.36 -567.61 -3.04 -2.47 16 9 C 0.14 -0.54 4.24 45.52 0.19 -0.34 16 10 H 0.12 -0.28 7.46 -2.39 -0.02 -0.30 16 11 C -0.11 0.67 7.16 31.12 0.22 0.89 16 12 C -0.12 0.79 4.15 -11.01 -0.05 0.75 16 13 H 0.15 -1.79 8.14 -2.39 -0.02 -1.81 16 14 C 0.53 -0.66 7.47 87.66 0.65 -0.01 16 15 O -0.57 -2.69 15.74 -3.02 -0.05 -2.74 16 16 N -0.52 0.64 6.26 -173.54 -1.09 -0.44 16 17 N -0.52 0.04 6.21 -175.81 -1.09 -1.05 16 18 C 0.56 2.01 7.88 86.70 0.68 2.69 16 19 O -0.55 -5.37 15.00 16.91 0.25 -5.12 16 20 C -0.17 -0.10 5.89 -20.01 -0.12 -0.22 16 21 C 0.16 0.39 6.72 22.85 0.15 0.54 16 22 O -0.50 -2.34 11.58 -68.69 -0.80 -3.14 16 23 C -0.14 0.04 9.53 22.34 0.21 0.25 16 24 C -0.06 0.24 5.39 -19.83 -0.11 0.13 16 25 C -0.09 0.38 2.81 71.24 0.20 0.58 16 26 O -0.55 0.45 12.76 -148.98 -1.90 -1.46 16 27 Si 0.77 -4.53 29.77 68.60 2.04 -2.49 16 28 C -0.13 0.83 8.65 22.24 0.19 1.02 16 29 C -0.05 0.29 9.54 22.52 0.21 0.50 16 30 C -0.13 0.77 7.43 31.12 0.23 1.00 16 31 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 33 H 0.07 0.50 5.88 -2.39 -0.01 0.48 16 34 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 36 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.07 0.49 5.88 -2.39 -0.01 0.48 16 38 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 39 H 0.06 0.12 8.14 -2.39 -0.02 0.11 16 40 H 0.42 -1.70 8.84 -92.70 -0.82 -2.52 16 41 H 0.10 -0.37 7.41 -2.39 -0.02 -0.38 16 42 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 43 H 0.44 -1.27 8.00 -213.32 -1.71 -2.98 16 44 H 0.44 -1.32 6.03 -213.32 -1.29 -2.61 16 45 H 0.41 -0.95 9.06 -74.05 -0.67 -1.63 16 46 H 0.14 -0.03 8.06 -2.91 -0.02 -0.05 16 47 H 0.13 -0.69 7.96 -2.38 -0.02 -0.70 16 48 H 0.39 -2.64 8.70 -74.06 -0.64 -3.29 16 49 H -0.27 0.85 7.10 99.48 0.71 1.56 16 50 H -0.31 -0.91 7.11 99.48 0.71 -0.20 16 51 H 0.16 -1.82 4.85 -2.91 -0.01 -1.84 16 52 H 0.16 -1.70 6.40 -2.91 -0.02 -1.72 16 53 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 54 H 0.09 -0.38 8.09 -2.39 -0.02 -0.40 16 Total: 0.00 -28.85 443.98 -4.50 -33.34 By element: Atomic # 1 Polarization: -16.10 SS G_CDS: -4.07 Total: -20.16 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 5.56 Total: 13.84 kcal Atomic # 7 Polarization: 1.26 SS G_CDS: -5.22 Total: -3.96 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -2.81 Total: -20.56 kcal Atomic # 14 Polarization: -4.53 SS G_CDS: 2.04 Total: -2.49 kcal Total: -28.85 -4.50 -33.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14472184_13422076.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.004 kcal (2) G-P(sol) polarization free energy of solvation -28.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds