Wall clock time and date at job start Tue Mar 9 2021 13:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47486 * 2 1 4 4 C 1.53000 * 109.46793 * 239.99949 * 2 1 3 5 5 O 1.45200 * 109.46618 * 120.00414 * 2 1 3 6 6 C 1.34635 * 117.00409 * 59.99513 * 5 2 1 7 7 O 1.21509 * 120.00107 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99875 * 179.97438 * 6 5 2 9 9 C 1.46499 * 119.99965 * 180.02562 * 8 6 5 10 10 H 1.09005 * 112.84778 * 336.19523 * 9 8 6 11 11 C 1.53784 * 113.69299 * 107.46156 * 9 8 6 12 12 C 1.53781 * 87.07940 * 139.99459 * 11 9 8 13 13 H 1.09000 * 113.69569 * 89.12968 * 12 11 9 14 14 C 1.50706 * 113.61233 * 220.02279 * 12 11 9 15 15 O 1.21279 * 120.00072 * 97.49490 * 14 12 11 16 16 N 1.34777 * 119.99762 * 277.49285 * 14 12 11 17 17 N 1.40095 * 119.99994 * 180.02562 * 16 14 12 18 18 C 1.34777 * 119.99998 * 180.02562 * 17 16 14 19 19 O 1.21690 * 120.00218 * 359.97438 * 18 17 16 20 20 C 1.46676 * 119.99971 * 180.02562 * 18 17 16 21 21 C 1.37874 * 126.23379 * 180.02562 * 20 18 17 22 22 C 1.39834 * 107.08707 * 179.97438 * 21 20 18 23 23 C 1.35453 * 107.86645 * 359.97438 * 22 21 20 24 24 C 1.50695 * 125.56569 * 180.02562 * 23 22 21 25 25 O 1.42902 * 109.47342 * 119.97304 * 24 23 22 26 26 Si 1.86294 * 109.47157 * 359.96736 * 24 23 22 27 27 N 1.35540 * 108.86731 * 359.72568 * 23 22 21 28 28 C 1.53776 * 113.61504 * 204.99830 * 9 8 6 29 29 H 1.09002 * 109.47362 * 300.00398 * 1 2 3 30 30 H 1.09004 * 109.46784 * 59.99901 * 1 2 3 31 31 H 1.08993 * 109.47546 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47520 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47190 * 299.99850 * 3 2 1 34 34 H 1.09003 * 109.47062 * 60.00018 * 3 2 1 35 35 H 1.09007 * 109.47118 * 300.00396 * 4 2 1 36 36 H 1.08991 * 109.47321 * 60.00204 * 4 2 1 37 37 H 1.08998 * 109.47158 * 180.02562 * 4 2 1 38 38 H 0.97001 * 120.00079 * 359.97438 * 8 6 5 39 39 H 1.08996 * 113.60998 * 25.44578 * 11 9 8 40 40 H 1.08997 * 113.61611 * 254.53905 * 11 9 8 41 41 H 0.96999 * 120.00047 * 0.02562 * 16 14 12 42 42 H 0.96999 * 119.99959 * 359.97438 * 17 16 14 43 43 H 1.08000 * 126.45465 * 0.02562 * 21 20 18 44 44 H 1.07999 * 126.06961 * 180.02562 * 22 21 20 45 45 H 1.09000 * 109.46752 * 239.96757 * 24 23 22 46 46 H 0.96706 * 113.99627 * 299.99848 * 25 24 23 47 47 H 1.48505 * 110.00217 * 180.02562 * 26 24 23 48 48 H 1.48499 * 110.00461 * 301.32262 * 26 24 23 49 49 H 0.97001 * 125.67521 * 180.30050 * 27 23 22 50 50 H 1.09011 * 113.61528 * 105.38125 * 28 9 8 51 51 H 1.08999 * 113.61794 * 334.48181 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0139 -0.6846 1.1855 6 6 1.6520 -1.9724 1.3383 7 8 0.9514 -2.5097 0.5036 8 7 2.0678 -2.6658 2.4167 9 6 1.6745 -4.0672 2.5827 10 1 0.7601 -4.3168 2.0444 11 6 2.8214 -5.0634 2.3435 12 6 2.2727 -5.8611 3.5382 13 1 1.5218 -6.6016 3.2627 14 6 3.3469 -6.4222 4.4339 15 8 3.6615 -5.8328 5.4461 16 7 3.9580 -7.5790 4.1101 17 7 4.9562 -8.1010 4.9430 18 6 5.5677 -9.2575 4.6189 19 8 5.2523 -9.8487 3.6031 20 6 6.6124 -9.8043 5.4912 21 6 7.3184 -10.9704 5.2850 22 6 8.2080 -11.1069 6.3553 23 6 8.0342 -10.0451 7.1781 24 6 8.7921 -9.7931 8.4560 25 8 9.4915 -8.5508 8.3580 26 14 10.0124 -11.1725 8.7364 27 7 7.0719 -9.2427 6.6610 28 6 1.6758 -4.5381 4.0465 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6765 -1.7490 -1.2493 36 1 1.6767 -0.2075 -2.1392 37 1 3.1299 -0.7217 -1.2491 38 1 2.6280 -2.2371 3.0825 39 1 3.8106 -4.6403 2.5182 40 1 2.7484 -5.5936 1.3939 41 1 3.7066 -8.0502 3.3004 42 1 5.2079 -7.6296 5.7526 43 1 7.2062 -11.6499 4.4531 44 1 8.9097 -11.9150 6.4998 45 1 8.0927 -9.7514 9.2910 46 1 10.1323 -8.5163 7.6346 47 1 10.7660 -10.9362 9.9941 48 1 9.3006 -12.4738 8.8083 49 1 6.7575 -8.4124 7.0516 50 1 0.6778 -4.6443 4.4720 51 1 2.3518 -3.9716 4.6869 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14472184_6580494.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:15 Heat of formation + Delta-G solvation = -80.064983 kcal Electronic energy + Delta-G solvation = -34249.760651 eV Core-core repulsion = 29346.933036 eV Total energy + Delta-G solvation = -4902.827615 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.182 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.65589 -42.06428 -41.56090 -40.45570 -39.26141 -37.80794 -37.70201 -36.62001 -35.39129 -34.19422 -33.18575 -32.04693 -31.15516 -28.37616 -28.31897 -27.70510 -26.82361 -26.58464 -24.13227 -23.45744 -22.53815 -21.73624 -21.48116 -21.20536 -20.67241 -19.91877 -19.17823 -18.99868 -18.64782 -17.93736 -17.43206 -17.21047 -16.99269 -16.72509 -16.58055 -16.27024 -16.08453 -15.78825 -15.50350 -15.43095 -15.31831 -15.16555 -14.93052 -14.58776 -14.44000 -14.39960 -14.03039 -13.84847 -13.72824 -13.57537 -13.38498 -13.12359 -12.93590 -12.88239 -12.68546 -12.59876 -12.48978 -12.37261 -12.22470 -12.21567 -12.09996 -11.84931 -11.72468 -11.40862 -11.20599 -11.12043 -10.69636 -10.21485 -10.13944 -9.80564 -9.29676 -4.90388 0.13186 0.52285 1.14414 1.21017 1.24096 1.50599 1.70927 1.72928 1.90643 2.12272 2.14946 2.72867 3.12601 3.19810 3.32087 3.43341 3.49385 3.57129 3.64197 3.72910 3.76186 3.78686 3.93166 3.98114 4.21611 4.25568 4.40019 4.40309 4.55072 4.57892 4.60391 4.64975 4.72317 4.75386 4.82885 4.84233 4.86308 4.91065 4.93653 4.98661 5.04991 5.13729 5.26162 5.28390 5.31325 5.34469 5.42887 5.56453 5.62475 5.76928 6.19307 6.29273 6.35500 6.57216 6.66456 7.05419 7.30334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.372 6.372 6 C 0.645 3.355 7 O -0.590 6.590 8 N -0.692 5.692 9 C 0.140 3.860 10 H 0.123 0.877 11 C -0.133 4.133 12 C -0.115 4.115 13 H 0.156 0.844 14 C 0.530 3.470 15 O -0.568 6.568 16 N -0.515 5.515 17 N -0.525 5.525 18 C 0.596 3.404 19 O -0.556 6.556 20 C -0.066 4.066 21 C -0.098 4.098 22 C -0.203 4.203 23 C 0.035 3.965 24 C -0.060 4.060 25 O -0.556 6.556 26 Si 0.809 3.191 27 N -0.518 5.518 28 C -0.115 4.115 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.415 0.585 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.441 0.559 42 H 0.431 0.569 43 H 0.156 0.844 44 H 0.174 0.826 45 H 0.115 0.885 46 H 0.399 0.601 47 H -0.297 1.297 48 H -0.282 1.282 49 H 0.425 0.575 50 H 0.099 0.901 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 0.847 0.126 2.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.398 3.602 7 O -0.481 6.481 8 N -0.351 5.351 9 C 0.036 3.964 10 H 0.141 0.859 11 C -0.172 4.172 12 C -0.138 4.138 13 H 0.174 0.826 14 C 0.318 3.682 15 O -0.445 6.445 16 N -0.263 5.263 17 N -0.272 5.272 18 C 0.385 3.615 19 O -0.433 6.433 20 C -0.180 4.180 21 C -0.125 4.125 22 C -0.227 4.227 23 C -0.084 4.084 24 C -0.169 4.169 25 O -0.364 6.364 26 Si 0.713 3.287 27 N -0.115 5.115 28 C -0.154 4.154 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.252 0.748 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.285 0.715 42 H 0.273 0.727 43 H 0.173 0.827 44 H 0.191 0.809 45 H 0.133 0.867 46 H 0.250 0.750 47 H -0.225 1.225 48 H -0.208 1.208 49 H 0.265 0.735 50 H 0.118 0.882 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.253 0.357 0.707 2.388 hybrid contribution -0.633 0.766 0.584 1.153 sum 1.620 1.123 1.291 2.357 Atomic orbital electron populations 1.22476 0.93934 1.03813 1.03491 1.22351 0.94527 0.92516 0.81521 1.21896 1.02410 0.91034 1.04227 1.22471 1.01571 1.02352 0.97295 1.86317 1.71545 1.23451 1.47305 1.18387 0.78534 0.80684 0.82559 1.90901 1.42183 1.70971 1.44050 1.44763 1.54814 1.12334 1.23155 1.22546 0.99019 0.77176 0.97642 0.85908 1.23494 0.99338 0.96418 0.97973 1.22583 0.96587 0.98522 0.96097 0.82638 1.21218 0.82342 0.78179 0.86482 1.90733 1.65836 1.59968 1.28003 1.45124 1.33018 1.23982 1.24219 1.44719 1.34316 1.23617 1.24503 1.17221 0.80440 0.78892 0.84956 1.90873 1.65445 1.60238 1.26758 1.19884 1.05048 1.00385 0.92675 1.21529 0.95652 0.95247 1.00092 1.20995 1.04969 1.00879 0.95835 1.21435 0.94624 0.93674 0.98680 1.25153 1.00217 0.97760 0.93805 1.86490 1.57995 1.34321 1.57576 0.92970 0.80087 0.72350 0.83287 1.41982 1.29916 1.21220 1.18389 1.23288 1.03319 0.93385 0.95381 0.92009 0.89483 0.91568 0.91279 0.88300 0.91245 0.91564 0.89488 0.92058 0.74783 0.89395 0.88357 0.71524 0.72674 0.82656 0.80893 0.86740 0.75010 1.22520 1.20803 0.73529 0.88222 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.49 8.37 71.98 0.60 0.11 16 2 C 0.13 0.34 1.13 -10.79 -0.01 0.33 16 3 C -0.14 0.28 8.85 71.98 0.64 0.91 16 4 C -0.18 -0.50 8.37 71.98 0.60 0.10 16 5 O -0.37 -1.95 9.94 -55.44 -0.55 -2.50 16 6 C 0.64 3.67 8.06 129.79 1.05 4.72 16 7 O -0.59 -6.04 11.48 19.81 0.23 -5.81 16 8 N -0.69 0.29 5.36 -567.61 -3.04 -2.75 16 9 C 0.14 -0.50 4.24 45.52 0.19 -0.30 16 10 H 0.12 -0.27 7.46 -2.38 -0.02 -0.29 16 11 C -0.13 0.72 7.43 31.12 0.23 0.95 16 12 C -0.12 0.74 4.15 -11.01 -0.05 0.69 16 13 H 0.16 -1.81 8.14 -2.39 -0.02 -1.83 16 14 C 0.53 -0.24 7.47 87.66 0.65 0.41 16 15 O -0.57 -3.44 15.74 -3.03 -0.05 -3.49 16 16 N -0.51 0.34 6.26 -173.53 -1.09 -0.75 16 17 N -0.52 -0.48 6.26 -176.39 -1.10 -1.58 16 18 C 0.60 2.52 7.90 86.45 0.68 3.21 16 19 O -0.56 -5.64 16.72 -4.32 -0.07 -5.71 16 20 C -0.07 -0.11 7.06 40.35 0.28 0.18 16 21 C -0.10 -0.12 10.65 22.57 0.24 0.12 16 22 C -0.20 0.54 9.32 22.01 0.21 0.74 16 23 C 0.04 -0.11 6.47 41.34 0.27 0.16 16 24 C -0.06 0.29 3.08 71.23 0.22 0.51 16 25 O -0.56 2.37 12.88 -148.98 -1.92 0.45 16 26 Si 0.81 -4.88 30.54 68.60 2.10 -2.79 16 27 N -0.52 1.32 5.99 -171.93 -1.03 0.29 16 28 C -0.12 0.61 7.16 31.12 0.22 0.83 16 29 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.09 -0.05 8.14 -2.38 -0.02 -0.07 16 31 H 0.07 0.50 5.88 -2.39 -0.01 0.49 16 32 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.10 -0.52 8.14 -2.38 -0.02 -0.54 16 34 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.07 0.50 5.88 -2.38 -0.01 0.49 16 36 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.42 -1.46 8.84 -92.71 -0.82 -2.28 16 39 H 0.09 -0.33 8.09 -2.39 -0.02 -0.35 16 40 H 0.10 -0.65 8.14 -2.39 -0.02 -0.66 16 41 H 0.44 -1.24 8.00 -213.32 -1.71 -2.94 16 42 H 0.43 -0.53 7.13 -213.32 -1.52 -2.05 16 43 H 0.16 0.10 8.06 -2.91 -0.02 0.08 16 44 H 0.17 -1.27 6.17 -2.91 -0.02 -1.29 16 45 H 0.12 -0.50 7.96 -2.39 -0.02 -0.52 16 46 H 0.40 -4.67 8.70 -74.05 -0.64 -5.31 16 47 H -0.30 -0.46 7.11 99.48 0.71 0.25 16 48 H -0.28 0.27 7.11 99.48 0.71 0.98 16 49 H 0.43 -2.50 8.19 -92.71 -0.76 -3.26 16 50 H 0.10 -0.69 8.14 -2.38 -0.02 -0.71 16 51 H 0.10 -0.27 7.41 -2.39 -0.02 -0.29 16 Total: 0.00 -26.35 424.29 -4.87 -31.22 By element: Atomic # 1 Polarization: -15.89 SS G_CDS: -4.37 Total: -20.27 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 6.03 Total: 13.68 kcal Atomic # 7 Polarization: 1.48 SS G_CDS: -6.26 Total: -4.79 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -2.36 Total: -17.06 kcal Atomic # 14 Polarization: -4.88 SS G_CDS: 2.10 Total: -2.79 kcal Total: -26.35 -4.87 -31.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14472184_6580494.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.843 kcal (2) G-P(sol) polarization free energy of solvation -26.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds