Wall clock time and date at job start Tue Mar 9 2021 13:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46777 * 2 1 4 4 C 1.52996 * 109.47079 * 239.99874 * 2 1 3 5 5 O 1.45194 * 109.47298 * 119.99742 * 2 1 3 6 6 C 1.34639 * 117.00111 * 60.00324 * 5 2 1 7 7 O 1.21511 * 120.00061 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00273 * 180.02562 * 6 5 2 9 9 C 1.46504 * 120.00093 * 179.97438 * 8 6 5 10 10 H 1.08994 * 112.90583 * 336.25031 * 9 8 6 11 11 C 1.53783 * 113.61233 * 107.49972 * 9 8 6 12 12 C 1.53784 * 87.07708 * 139.97979 * 11 9 8 13 13 H 1.09006 * 113.68919 * 89.13382 * 12 11 9 14 14 C 1.50699 * 113.61403 * 220.01453 * 12 11 9 15 15 O 1.21279 * 119.99668 * 97.50185 * 14 12 11 16 16 N 1.34772 * 120.00272 * 277.50035 * 14 12 11 17 17 N 1.40105 * 119.99935 * 179.97438 * 16 14 12 18 18 C 1.34779 * 119.99651 * 180.02562 * 17 16 14 19 19 O 1.21636 * 120.00404 * 0.02562 * 18 17 16 20 20 C 1.47197 * 119.99588 * 180.02562 * 18 17 16 21 21 C 1.36002 * 123.46272 * 0.02562 * 20 18 17 22 22 S 1.70448 * 110.81828 * 179.97438 * 21 20 18 23 23 C 1.75502 * 92.44474 * 0.02562 * 22 21 20 24 24 C 1.50693 * 124.71391 * 180.02562 * 23 22 21 25 25 O 1.42896 * 109.47261 * 119.97351 * 24 23 22 26 26 Si 1.86305 * 109.46971 * 359.97333 * 24 23 22 27 27 C 1.32771 * 110.57663 * 359.97438 * 23 22 21 28 28 C 1.53781 * 87.08352 * 334.56641 * 12 11 9 29 29 H 1.08994 * 109.47208 * 299.99956 * 1 2 3 30 30 H 1.08998 * 109.47348 * 60.00426 * 1 2 3 31 31 H 1.08999 * 109.46750 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46825 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46834 * 299.99889 * 3 2 1 34 34 H 1.08994 * 109.47215 * 60.00049 * 3 2 1 35 35 H 1.08996 * 109.47133 * 300.00076 * 4 2 1 36 36 H 1.09002 * 109.47418 * 60.00136 * 4 2 1 37 37 H 1.09003 * 109.47204 * 179.97438 * 4 2 1 38 38 H 0.96999 * 120.00154 * 359.97438 * 8 6 5 39 39 H 1.08998 * 113.61411 * 25.43331 * 11 9 8 40 40 H 1.08998 * 113.61723 * 254.52950 * 11 9 8 41 41 H 0.97001 * 120.00253 * 0.02562 * 16 14 12 42 42 H 0.96991 * 119.99996 * 0.02562 * 17 16 14 43 43 H 1.08000 * 124.58981 * 0.24393 * 21 20 18 44 44 H 1.09002 * 109.47324 * 239.97774 * 24 23 22 45 45 H 0.96704 * 114.00457 * 300.00176 * 25 24 23 46 46 H 1.48502 * 109.99885 * 58.68309 * 26 24 23 47 47 H 1.48504 * 110.00041 * 180.02562 * 26 24 23 48 48 H 1.07998 * 123.45977 * 180.02562 * 27 23 22 49 49 H 1.09000 * 113.61063 * 139.97580 * 28 12 11 50 50 H 1.08999 * 113.61374 * 270.87879 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0141 -0.6844 1.1855 6 6 1.6524 -1.9723 1.3384 7 8 0.9510 -2.5095 0.5041 8 7 2.0674 -2.6653 2.4172 9 6 1.6733 -4.0665 2.5837 10 1 0.7596 -4.3172 2.0449 11 6 2.8214 -5.0617 2.3460 12 6 2.2724 -5.8592 3.5407 13 1 1.5225 -6.6007 3.2649 14 6 3.3464 -6.4190 4.4375 15 8 3.6596 -5.8289 5.4497 16 7 3.9588 -7.5753 4.1148 17 7 4.9577 -8.0954 4.9483 18 6 5.5705 -9.2516 4.6252 19 8 5.2567 -9.8432 3.6098 20 6 6.6195 -9.7982 5.5012 21 6 7.0247 -9.1965 6.6516 22 16 8.2520 -10.1040 7.4102 23 6 8.2275 -11.3285 6.1531 24 6 9.1086 -12.5507 6.1284 25 8 8.2946 -13.7250 6.1370 26 14 10.2136 -12.5501 7.6285 27 6 7.3241 -11.0289 5.2274 28 6 1.6738 -4.5366 4.0479 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 2.6269 -2.2364 3.0834 39 1 3.8101 -4.6376 2.5213 40 1 2.7497 -5.5924 1.3966 41 1 3.7086 -8.0472 3.3050 42 1 5.2082 -7.6235 5.7578 43 1 6.6203 -8.2713 7.0349 44 1 9.7206 -12.5393 5.2265 45 1 7.7224 -13.8014 6.9128 46 1 9.3913 -12.5334 8.8649 47 1 11.0881 -13.7502 7.6156 48 1 7.1354 -11.6425 4.3590 49 1 0.6756 -4.6436 4.4724 50 1 2.3488 -3.9692 4.6886 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14472184_6894386.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:26 Heat of formation + Delta-G solvation = -90.219749 kcal Electronic energy + Delta-G solvation = -33792.175823 eV Core-core repulsion = 28915.259881 eV Total energy + Delta-G solvation = -4876.915942 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.09940 -41.68481 -40.88882 -39.39827 -38.87185 -37.78771 -37.27950 -36.53374 -35.37815 -34.17211 -33.09446 -31.32570 -28.36955 -28.31028 -27.53197 -27.01483 -26.79663 -25.63723 -23.85798 -22.71185 -22.19485 -21.42981 -20.94352 -20.29163 -19.44305 -19.15706 -18.85393 -18.53681 -17.91343 -17.55207 -17.31061 -17.19369 -16.87541 -16.49064 -16.42352 -16.25700 -15.84063 -15.69963 -15.48001 -15.35500 -15.28706 -14.88242 -14.60329 -14.38919 -14.08262 -13.85600 -13.73670 -13.63643 -13.54686 -13.37575 -13.11223 -12.92713 -12.87329 -12.70466 -12.61834 -12.57187 -12.46890 -12.43787 -12.34591 -12.20404 -11.96470 -11.77480 -11.41603 -11.39866 -11.13277 -11.09520 -10.79361 -10.19724 -10.07349 -9.73661 -9.41813 -5.04665 -0.43648 0.32901 0.59454 0.66983 0.69592 1.16854 1.22384 1.31635 1.56011 1.72296 1.91461 2.09880 2.79614 3.14227 3.22041 3.30324 3.35083 3.51972 3.61476 3.66737 3.73760 3.79516 3.83321 3.91234 3.93989 4.01909 4.19021 4.41644 4.50744 4.56174 4.60193 4.61025 4.64387 4.67329 4.73660 4.76186 4.84078 4.85610 4.87112 4.95575 4.96170 5.00229 5.08344 5.14898 5.26877 5.29932 5.38832 5.44651 5.57288 5.58117 6.30251 6.37326 6.41034 6.65792 7.13268 7.31840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.644 3.356 7 O -0.591 6.591 8 N -0.691 5.691 9 C 0.140 3.860 10 H 0.122 0.878 11 C -0.134 4.134 12 C -0.116 4.116 13 H 0.154 0.846 14 C 0.531 3.469 15 O -0.566 6.566 16 N -0.517 5.517 17 N -0.517 5.517 18 C 0.582 3.418 19 O -0.570 6.570 20 C -0.175 4.175 21 C -0.194 4.194 22 S 0.264 5.736 23 C -0.245 4.245 24 C -0.044 4.044 25 O -0.543 6.543 26 Si 0.726 3.274 27 C -0.068 4.068 28 C -0.114 4.114 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.416 0.584 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.439 0.561 42 H 0.437 0.563 43 H 0.198 0.802 44 H 0.133 0.867 45 H 0.389 0.611 46 H -0.252 1.252 47 H -0.276 1.276 48 H 0.140 0.860 49 H 0.099 0.901 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 3.790 3.718 5.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.398 3.602 7 O -0.482 6.482 8 N -0.350 5.350 9 C 0.036 3.964 10 H 0.140 0.860 11 C -0.173 4.173 12 C -0.139 4.139 13 H 0.172 0.828 14 C 0.318 3.682 15 O -0.443 6.443 16 N -0.266 5.266 17 N -0.265 5.265 18 C 0.369 3.631 19 O -0.449 6.449 20 C -0.195 4.195 21 C -0.333 4.333 22 S 0.531 5.469 23 C -0.362 4.362 24 C -0.154 4.154 25 O -0.352 6.352 26 Si 0.627 3.373 27 C -0.097 4.097 28 C -0.152 4.152 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.253 0.747 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.282 0.718 42 H 0.281 0.719 43 H 0.215 0.785 44 H 0.151 0.849 45 H 0.238 0.762 46 H -0.177 1.177 47 H -0.202 1.202 48 H 0.158 0.842 49 H 0.118 0.882 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.561 3.292 4.763 6.797 hybrid contribution -1.733 -0.780 -1.185 2.240 sum 1.828 2.512 3.577 4.738 Atomic orbital electron populations 1.22477 0.93954 1.03811 1.03494 1.22344 0.94511 0.92520 0.81517 1.21897 1.02419 0.91021 1.04231 1.22473 1.01579 1.02345 0.97320 1.86317 1.71554 1.23434 1.47274 1.18394 0.78535 0.80684 0.82576 1.90902 1.42160 1.70981 1.44129 1.44761 1.54840 1.12347 1.23067 1.22548 0.98954 0.77170 0.97744 0.86002 1.23496 0.99391 0.96462 0.97936 1.22576 0.96642 0.98542 0.96121 0.82832 1.21154 0.82323 0.78180 0.86505 1.90727 1.65832 1.59833 1.27889 1.45141 1.33106 1.24046 1.24269 1.44696 1.33772 1.23532 1.24479 1.17926 0.81018 0.78923 0.85193 1.90823 1.66033 1.60291 1.27753 1.19738 1.02584 0.99148 0.98003 1.26225 1.02623 1.05906 0.98511 1.83034 1.31290 1.11376 1.21175 1.24854 1.05957 1.04190 1.01183 1.24692 0.96145 0.80708 1.13898 1.86616 1.58020 1.41692 1.48853 0.94498 0.80041 0.88702 0.74065 1.20914 0.94623 0.94433 0.99759 1.23282 1.03336 0.93334 0.95292 0.91971 0.89508 0.91582 0.91265 0.88330 0.91207 0.91588 0.89515 0.92048 0.74730 0.89308 0.88574 0.71775 0.71924 0.78474 0.84930 0.76164 1.17697 1.20164 0.84216 0.88217 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.50 8.37 71.98 0.60 0.11 16 2 C 0.13 0.34 1.13 -10.79 -0.01 0.33 16 3 C -0.14 0.28 8.85 71.98 0.64 0.92 16 4 C -0.18 -0.52 8.37 71.98 0.60 0.09 16 5 O -0.37 -1.92 9.94 -55.48 -0.55 -2.47 16 6 C 0.64 3.67 8.06 129.79 1.05 4.71 16 7 O -0.59 -6.11 11.48 19.81 0.23 -5.88 16 8 N -0.69 0.36 5.36 -567.61 -3.04 -2.69 16 9 C 0.14 -0.49 4.24 45.52 0.19 -0.30 16 10 H 0.12 -0.25 7.46 -2.39 -0.02 -0.26 16 11 C -0.13 0.70 7.43 31.12 0.23 0.93 16 12 C -0.12 0.73 4.15 -11.01 -0.05 0.69 16 13 H 0.15 -1.73 8.14 -2.38 -0.02 -1.75 16 14 C 0.53 -0.30 7.47 87.66 0.65 0.36 16 15 O -0.57 -3.10 15.74 -3.03 -0.05 -3.15 16 16 N -0.52 0.17 6.26 -173.54 -1.09 -0.91 16 17 N -0.52 -0.49 6.23 -176.03 -1.10 -1.59 16 18 C 0.58 2.81 7.91 86.60 0.68 3.50 16 19 O -0.57 -6.73 16.63 -4.14 -0.07 -6.80 16 20 C -0.18 -0.22 5.98 -19.87 -0.12 -0.33 16 21 C -0.19 0.94 10.38 67.30 0.70 1.64 16 22 S 0.26 -1.65 20.18 -56.49 -1.14 -2.79 16 23 C -0.25 0.45 5.68 24.51 0.14 0.59 16 24 C -0.04 0.10 2.95 71.23 0.21 0.31 16 25 O -0.54 -0.74 12.85 -148.98 -1.91 -2.65 16 26 Si 0.73 -3.28 30.91 68.60 2.12 -1.16 16 27 C -0.07 -0.17 9.91 22.67 0.22 0.06 16 28 C -0.11 0.62 7.16 31.12 0.22 0.85 16 29 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.07 0.50 5.88 -2.39 -0.01 0.49 16 32 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.07 0.51 5.88 -2.39 -0.01 0.50 16 36 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.42 -1.57 8.84 -92.71 -0.82 -2.38 16 39 H 0.09 -0.33 8.09 -2.39 -0.02 -0.35 16 40 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 41 H 0.44 -0.87 8.00 -213.32 -1.71 -2.58 16 42 H 0.44 -0.92 6.50 -213.33 -1.39 -2.31 16 43 H 0.20 -2.06 7.01 -2.91 -0.02 -2.08 16 44 H 0.13 -0.48 7.96 -2.39 -0.02 -0.50 16 45 H 0.39 -1.82 8.70 -74.05 -0.64 -2.47 16 46 H -0.25 0.56 7.11 99.48 0.71 1.27 16 47 H -0.28 -0.74 7.11 99.48 0.71 -0.03 16 48 H 0.14 0.78 8.06 -2.91 -0.02 0.76 16 49 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 50 H 0.10 -0.32 7.41 -2.39 -0.02 -0.34 16 Total: 0.00 -25.66 429.04 -4.11 -29.77 By element: Atomic # 1 Polarization: -10.66 SS G_CDS: -3.48 Total: -14.14 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 5.97 Total: 14.44 kcal Atomic # 7 Polarization: 0.04 SS G_CDS: -5.22 Total: -5.19 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -2.35 Total: -20.94 kcal Atomic # 14 Polarization: -3.28 SS G_CDS: 2.12 Total: -1.16 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -1.14 Total: -2.79 kcal Total: -25.66 -4.11 -29.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14472184_6894386.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.451 kcal (2) G-P(sol) polarization free energy of solvation -25.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds