Wall clock time and date at job start Tue Mar 9 2021 13:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34229 * 116.99820 * 2 1 4 4 O 1.20819 * 120.00088 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99928 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47531 * 59.99976 * 5 3 2 7 7 C 1.53005 * 109.47094 * 179.97438 * 5 3 2 8 8 C 1.53008 * 109.46849 * 179.97438 * 7 5 3 9 9 C 1.52999 * 109.47230 * 299.99932 * 8 7 5 10 10 H 1.09001 * 109.46669 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.47209 * 300.00081 * 9 8 7 12 12 C 1.34769 * 119.99960 * 204.99979 * 11 9 8 13 13 O 1.21722 * 120.00436 * 0.02562 * 12 11 9 14 14 C 1.46569 * 120.00244 * 180.02562 * 12 11 9 15 15 C 1.40857 * 126.58549 * 180.02562 * 14 12 11 16 16 C 1.40089 * 132.85900 * 0.28126 * 15 14 12 17 17 C 1.36450 * 119.24859 * 179.76939 * 16 15 14 18 18 C 1.50703 * 120.29416 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.46952 * 119.98366 * 18 17 16 20 20 Si 1.86302 * 109.47171 * 239.98055 * 18 17 16 21 21 C 1.40164 * 119.41303 * 359.92017 * 17 16 15 22 22 C 1.35182 * 120.31396 * 0.02577 * 21 17 16 23 23 N 1.36238 * 120.71065 * 0.02669 * 22 21 17 24 24 N 1.40016 * 132.01376 * 179.97438 * 23 22 21 25 25 C 1.30749 * 109.60417 * 179.97438 * 24 23 22 26 26 C 1.52995 * 109.47109 * 60.00384 * 9 8 7 27 27 C 1.52999 * 109.47302 * 300.00260 * 5 3 2 28 28 H 1.09002 * 109.47185 * 60.00142 * 1 2 3 29 29 H 1.09002 * 109.47033 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47485 * 299.99950 * 1 2 3 31 31 H 1.08998 * 109.46867 * 60.00354 * 7 5 3 32 32 H 1.08995 * 109.47195 * 299.99973 * 7 5 3 33 33 H 1.09004 * 109.46541 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47060 * 60.00518 * 8 7 5 35 35 H 0.97003 * 119.99707 * 25.00442 * 11 9 8 36 36 H 1.07998 * 120.37990 * 359.69094 * 16 15 14 37 37 H 1.08996 * 109.47206 * 359.97438 * 18 17 16 38 38 H 0.96696 * 114.00093 * 180.02562 * 19 18 17 39 39 H 1.48496 * 110.00089 * 299.99880 * 20 18 17 40 40 H 1.48496 * 110.00041 * 61.32498 * 20 18 17 41 41 H 1.07995 * 119.84373 * 180.02562 * 21 17 16 42 42 H 1.08004 * 119.64739 * 180.02562 * 22 21 17 43 43 H 1.08002 * 125.62696 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.47519 * 59.99485 * 26 9 8 45 45 H 1.08995 * 109.47156 * 179.97438 * 26 9 8 46 46 H 1.09007 * 109.46812 * 299.99559 * 27 5 3 47 47 H 1.08991 * 109.47452 * 59.99777 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9564 0.7806 -0.8891 7 6 4.0000 2.7422 -0.0002 8 6 5.5280 2.8222 0.0011 9 6 6.0739 2.1296 1.2513 10 1 7.1624 2.1871 1.2523 11 7 5.5491 2.7947 2.4465 12 6 6.2294 2.7284 3.6080 13 8 7.2801 2.1163 3.6640 14 6 5.7041 3.3932 4.8040 15 6 6.2968 3.4139 6.0816 16 6 7.4792 2.8633 6.5926 17 6 7.7952 3.0634 7.9048 18 6 9.0611 2.4813 8.4793 19 8 9.8889 3.5361 8.9734 20 14 8.6345 1.3216 9.8735 21 6 6.9326 3.8161 8.7135 22 6 5.7973 4.3389 8.1986 23 7 5.4726 4.1438 6.8899 24 7 4.3801 4.5656 6.1225 25 6 4.5087 4.1265 4.8977 26 6 5.6402 0.6624 1.2520 27 6 4.1128 0.5816 1.2501 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.6099 3.2368 0.8893 32 1 3.6106 3.2357 -0.8906 33 1 5.8369 3.8675 0.0010 34 1 5.9184 2.3275 -0.8882 35 1 4.7120 3.2827 2.4019 36 1 8.1327 2.2859 5.9555 37 1 9.5947 1.9342 7.7021 38 1 10.7230 3.2341 9.3582 39 1 7.9065 2.0554 10.9397 40 1 7.8002 0.2028 9.3663 41 1 7.1761 3.9791 9.7530 42 1 5.1406 4.9175 8.8314 43 1 3.8125 4.3007 4.0906 44 1 6.0306 0.1676 0.3628 45 1 6.0295 0.1689 2.1425 46 1 3.7227 1.0759 2.1399 47 1 3.8038 -0.4636 1.2503 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_11618758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:01 Heat of formation + Delta-G solvation = -49.424951 kcal Electronic energy + Delta-G solvation = -32426.405222 eV Core-core repulsion = 27963.637318 eV Total energy + Delta-G solvation = -4462.767904 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.43431 -41.90078 -40.83527 -39.32151 -38.82209 -37.53262 -37.28264 -34.86740 -34.35617 -32.29445 -31.90851 -31.71631 -30.08131 -28.60317 -27.31903 -25.37019 -24.71426 -23.89721 -23.68285 -23.06161 -21.80614 -21.47022 -20.18456 -19.36121 -18.65488 -18.43703 -18.01936 -17.84882 -17.71783 -17.41372 -17.08807 -16.87868 -16.50388 -16.25028 -15.97590 -15.58454 -15.48631 -15.12528 -14.84241 -14.82419 -14.60724 -14.36244 -14.23407 -13.95216 -13.87699 -13.67036 -13.42409 -13.25756 -13.14782 -13.11768 -12.94194 -12.59663 -12.20347 -12.18664 -12.05257 -11.99032 -11.86607 -11.73630 -11.61372 -11.39215 -11.15984 -10.99119 -10.86218 -10.24265 -10.07527 -8.91690 -5.01688 -0.69537 -0.26097 0.89354 0.92803 1.10045 1.22315 1.63890 1.71943 1.90699 1.96990 2.22471 2.41551 2.94398 3.08564 3.39485 3.48080 3.58880 3.61083 3.68713 3.69901 3.79176 3.89054 3.99388 4.07275 4.11668 4.16056 4.23974 4.25541 4.26541 4.30487 4.38457 4.42371 4.45055 4.46954 4.62776 4.66617 4.67904 4.81438 4.98797 5.00849 5.03159 5.07652 5.11337 5.13554 5.17271 5.27812 5.31232 5.36998 5.51733 5.58379 6.16358 6.55330 6.65412 6.86213 7.26015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.462 3.538 4 O -0.537 6.537 5 C -0.074 4.074 6 H 0.134 0.866 7 C -0.104 4.104 8 C -0.116 4.116 9 C 0.144 3.856 10 H 0.081 0.919 11 N -0.710 5.710 12 C 0.601 3.399 13 O -0.585 6.585 14 C -0.336 4.336 15 C 0.148 3.852 16 C -0.117 4.117 17 C -0.033 4.033 18 C -0.082 4.082 19 O -0.557 6.557 20 Si 0.804 3.196 21 C -0.150 4.150 22 C 0.107 3.893 23 N -0.275 5.275 24 N -0.338 5.338 25 C 0.127 3.873 26 C -0.123 4.123 27 C -0.103 4.103 28 H 0.061 0.939 29 H 0.126 0.874 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.406 0.594 36 H 0.158 0.842 37 H 0.093 0.907 38 H 0.409 0.591 39 H -0.274 1.274 40 H -0.305 1.305 41 H 0.183 0.817 42 H 0.204 0.796 43 H 0.230 0.770 44 H 0.097 0.903 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 -2.976 1.489 4.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.306 3.694 4 O -0.427 6.427 5 C -0.093 4.093 6 H 0.151 0.849 7 C -0.141 4.141 8 C -0.153 4.153 9 C 0.040 3.960 10 H 0.099 0.901 11 N -0.362 5.362 12 C 0.390 3.610 13 O -0.467 6.467 14 C -0.350 4.350 15 C 0.027 3.973 16 C -0.137 4.137 17 C -0.038 4.038 18 C -0.190 4.190 19 O -0.367 6.367 20 Si 0.706 3.294 21 C -0.171 4.171 22 C -0.018 4.018 23 N -0.039 5.039 24 N -0.158 5.158 25 C -0.053 4.053 26 C -0.161 4.161 27 C -0.140 4.140 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.243 0.757 36 H 0.175 0.825 37 H 0.111 0.889 38 H 0.261 0.739 39 H -0.200 1.200 40 H -0.233 1.233 41 H 0.200 0.800 42 H 0.221 0.779 43 H 0.246 0.754 44 H 0.115 0.885 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.561 -2.379 2.480 3.774 hybrid contribution -0.684 0.166 -1.028 1.246 sum 0.877 -2.213 1.452 2.788 Atomic orbital electron populations 1.23496 0.75247 1.05473 1.02363 1.86512 1.24584 1.33361 1.83580 1.24393 0.93045 0.80960 0.70991 1.90667 1.68100 1.37286 1.46647 1.21235 0.84958 1.00018 1.03081 0.84865 1.21445 0.96072 0.92989 1.03616 1.21811 0.94044 1.02294 0.97197 1.21055 0.99070 0.91936 0.83919 0.90095 1.45778 1.26294 1.55216 1.08903 1.16889 0.83057 0.78574 0.82437 1.90743 1.24654 1.45617 1.85643 1.19800 1.01966 1.19188 0.94089 1.19568 0.92329 0.94024 0.91377 1.20712 0.95386 1.02208 0.95361 1.19878 0.96866 0.94558 0.92525 1.24884 0.90880 0.96232 1.07022 1.86425 1.35710 1.32954 1.81649 0.94257 0.85918 0.74062 0.75134 1.21163 0.93046 0.99888 1.02995 1.22170 0.98494 0.99980 0.81145 1.46300 1.15709 1.33111 1.08763 1.77570 1.05787 1.27453 1.05016 1.24558 0.95052 0.90861 0.94847 1.21866 0.94642 0.96180 1.03440 1.21412 0.96040 1.01186 0.95392 0.91973 0.85541 0.92250 0.91617 0.90396 0.89863 0.87861 0.75695 0.82492 0.88864 0.73867 1.20000 1.23301 0.80002 0.77886 0.75414 0.88475 0.92653 0.92399 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.55 113.37 1.20 1.18 16 2 O -0.36 -1.01 10.47 -51.40 -0.54 -1.55 16 3 C 0.46 1.56 7.26 71.24 0.52 2.08 16 4 O -0.54 -4.95 15.73 21.98 0.35 -4.61 16 5 C -0.07 0.22 2.63 -11.54 -0.03 0.19 16 6 H 0.13 -0.91 8.14 -2.39 -0.02 -0.93 16 7 C -0.10 0.40 4.32 30.60 0.13 0.53 16 8 C -0.12 0.68 5.61 30.60 0.17 0.85 16 9 C 0.14 -0.18 2.78 44.99 0.13 -0.05 16 10 H 0.08 0.18 7.58 -2.39 -0.02 0.16 16 11 N -0.71 -0.72 4.22 -446.60 -1.89 -2.61 16 12 C 0.60 5.05 7.75 86.42 0.67 5.72 16 13 O -0.58 -8.54 15.37 -4.42 -0.07 -8.61 16 14 C -0.34 -2.88 6.17 -19.90 -0.12 -3.01 16 15 C 0.15 1.52 6.76 39.50 0.27 1.79 16 16 C -0.12 -0.95 9.35 22.30 0.21 -0.74 16 17 C -0.03 -0.13 4.53 -19.81 -0.09 -0.22 16 18 C -0.08 0.20 2.81 71.24 0.20 0.40 16 19 O -0.56 1.85 12.76 -148.98 -1.90 -0.05 16 20 Si 0.80 -3.86 31.97 68.60 2.19 -1.67 16 21 C -0.15 -0.24 8.67 22.03 0.19 -0.05 16 22 C 0.11 0.30 11.17 83.30 0.93 1.23 16 23 N -0.27 -2.35 3.86 -187.28 -0.72 -3.07 16 24 N -0.34 -2.99 12.57 -56.61 -0.71 -3.71 16 25 C 0.13 0.61 11.44 85.42 0.98 1.59 16 26 C -0.12 0.23 5.60 30.58 0.17 0.40 16 27 C -0.10 0.22 4.98 30.58 0.15 0.38 16 28 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 29 H 0.13 -0.76 8.14 -2.39 -0.02 -0.78 16 30 H 0.06 0.01 8.13 -2.38 -0.02 -0.01 16 31 H 0.07 -0.19 6.46 -2.39 -0.02 -0.20 16 32 H 0.08 -0.22 8.10 -2.39 -0.02 -0.24 16 33 H 0.08 -0.49 8.14 -2.38 -0.02 -0.51 16 34 H 0.10 -0.92 8.14 -2.39 -0.02 -0.94 16 35 H 0.41 -1.19 5.79 -92.71 -0.54 -1.72 16 36 H 0.16 1.36 7.01 -2.91 -0.02 1.34 16 37 H 0.09 -0.43 7.71 -2.39 -0.02 -0.45 16 38 H 0.41 -5.67 8.74 -74.06 -0.65 -6.32 16 39 H -0.27 0.17 7.07 99.48 0.70 0.88 16 40 H -0.31 -1.07 7.11 99.48 0.71 -0.36 16 41 H 0.18 -0.58 7.52 -2.91 -0.02 -0.60 16 42 H 0.20 -0.77 8.06 -2.91 -0.02 -0.80 16 43 H 0.23 -0.90 7.46 -2.91 -0.02 -0.93 16 44 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 45 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.06 0.01 7.60 -2.38 -0.02 -0.01 16 47 H 0.08 -0.16 8.11 -2.39 -0.02 -0.18 16 Total: 0.00 -28.88 388.76 2.25 -26.63 By element: Atomic # 1 Polarization: -12.89 SS G_CDS: -0.13 Total: -13.02 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 5.67 Total: 12.26 kcal Atomic # 7 Polarization: -6.06 SS G_CDS: -3.32 Total: -9.38 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -2.16 Total: -14.81 kcal Atomic # 14 Polarization: -3.86 SS G_CDS: 2.19 Total: -1.67 kcal Total: -28.88 2.25 -26.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_11618758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.797 kcal (2) G-P(sol) polarization free energy of solvation -28.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds