Wall clock time and date at job start Tue Mar 9 2021 13:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34237 * 117.00022 * 2 1 4 4 O 1.20821 * 119.99593 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99831 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.47450 * 59.99952 * 5 3 2 7 7 C 1.52998 * 109.46884 * 179.97438 * 5 3 2 8 8 C 1.52999 * 109.47127 * 179.97438 * 7 5 3 9 9 C 1.52992 * 109.47175 * 299.99979 * 8 7 5 10 10 H 1.09001 * 109.47325 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.47330 * 299.99908 * 9 8 7 12 12 C 1.34779 * 120.00464 * 204.99972 * 11 9 8 13 13 O 1.21700 * 119.99402 * 359.97438 * 12 11 9 14 14 C 1.46667 * 120.00321 * 180.02562 * 12 11 9 15 15 C 1.37878 * 126.23470 * 179.97438 * 14 12 11 16 16 C 1.50698 * 126.45527 * 0.02562 * 15 14 12 17 17 C 1.39834 * 107.08457 * 179.73646 * 15 14 12 18 18 C 1.50698 * 126.06942 * 180.22204 * 17 15 14 19 19 O 1.42902 * 109.47285 * 59.05183 * 18 17 15 20 20 Si 1.86305 * 109.46934 * 299.05865 * 18 17 15 21 21 C 1.35455 * 107.86820 * 0.24307 * 17 15 14 22 22 C 1.50699 * 125.56662 * 180.02562 * 21 17 15 23 23 N 1.35530 * 108.87060 * 359.97438 * 21 17 15 24 24 C 1.52998 * 109.47076 * 59.99990 * 9 8 7 25 25 C 1.52996 * 109.47096 * 299.99659 * 24 9 8 26 26 H 1.08999 * 109.46916 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47180 * 300.00341 * 1 2 3 28 28 H 1.09000 * 109.46676 * 60.00246 * 1 2 3 29 29 H 1.08998 * 109.47456 * 59.99768 * 7 5 3 30 30 H 1.09003 * 109.46925 * 300.00220 * 7 5 3 31 31 H 1.09004 * 109.47297 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46919 * 60.00381 * 8 7 5 33 33 H 0.97001 * 120.00191 * 24.99998 * 11 9 8 34 34 H 1.08995 * 109.46790 * 269.68243 * 16 15 14 35 35 H 1.08995 * 109.47013 * 149.68347 * 16 15 14 36 36 H 1.08999 * 109.47133 * 29.68600 * 16 15 14 37 37 H 1.08996 * 109.47780 * 179.05471 * 18 17 15 38 38 H 0.96698 * 114.00578 * 180.02562 * 19 18 17 39 39 H 1.48503 * 109.99728 * 305.27019 * 20 18 17 40 40 H 1.48491 * 110.00136 * 66.58715 * 20 18 17 41 41 H 1.09005 * 109.46586 * 84.68288 * 22 21 17 42 42 H 1.08997 * 109.47026 * 204.68053 * 22 21 17 43 43 H 1.08995 * 109.46882 * 324.68638 * 22 21 17 44 44 H 0.96999 * 125.68238 * 180.02562 * 23 21 17 45 45 H 1.08998 * 109.47456 * 60.00123 * 24 9 8 46 46 H 1.09006 * 109.47451 * 180.02562 * 24 9 8 47 47 H 1.08996 * 109.47533 * 300.00027 * 25 24 9 48 48 H 1.09005 * 109.47387 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9565 0.7806 -0.8891 7 6 4.0001 2.7421 -0.0002 8 6 5.5280 2.8222 0.0011 9 6 6.0740 2.1296 1.2512 10 1 7.1625 2.1870 1.2524 11 7 5.5492 2.7946 2.4465 12 6 6.2295 2.7283 3.6081 13 8 7.2795 2.1156 3.6642 14 6 5.7038 3.3937 4.8048 15 6 6.2898 3.4085 6.0528 16 6 7.5867 2.7465 6.4410 17 6 5.4572 4.1592 6.8887 18 6 5.6958 4.4521 8.3475 19 8 6.9382 5.1419 8.4979 20 14 5.7544 2.8524 9.3006 21 6 4.3979 4.5760 6.1545 22 6 3.2549 5.4159 6.6634 23 7 4.5343 4.1151 4.8873 24 6 5.6402 0.6624 1.2520 25 6 4.1124 0.5823 1.2509 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.6100 3.2368 0.8893 30 1 3.6107 3.2356 -0.8907 31 1 5.8371 3.8675 0.0000 32 1 5.9185 2.3274 -0.8883 33 1 4.7121 3.2827 2.4019 34 1 7.3871 1.7335 6.7903 35 1 8.0623 3.3184 7.2377 36 1 8.2486 2.7088 5.5759 37 1 4.8865 5.0738 8.7305 38 1 7.1572 5.3628 9.4135 39 1 4.5194 2.0666 9.0505 40 1 6.9475 2.0651 8.8985 41 1 3.5300 6.4697 6.6177 42 1 2.3738 5.2433 6.0453 43 1 3.0342 5.1424 7.6951 44 1 3.9132 4.2708 4.1587 45 1 6.0307 0.1676 0.3628 46 1 6.0288 0.1690 2.1430 47 1 3.7219 1.0771 2.1401 48 1 3.8032 -0.4630 1.2509 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_12297754.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:04 Heat of formation + Delta-G solvation = -121.849305 kcal Electronic energy + Delta-G solvation = -30574.615597 eV Core-core repulsion = 26403.273851 eV Total energy + Delta-G solvation = -4171.341746 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.177 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.81755 -41.94581 -40.82403 -39.01045 -37.61840 -37.60405 -35.18798 -33.94382 -33.19799 -31.99031 -31.45545 -29.35178 -28.72857 -27.54749 -26.41558 -24.87521 -23.83107 -22.97284 -21.85855 -20.97066 -20.43184 -19.94547 -19.54609 -18.71288 -18.25802 -17.90438 -17.60760 -17.04531 -16.79393 -16.60484 -16.22317 -15.66028 -15.39648 -15.18875 -15.03322 -14.92919 -14.76105 -14.48588 -14.34595 -14.21303 -13.97882 -13.93717 -13.76439 -13.66268 -13.36700 -13.28667 -13.24270 -13.24170 -13.00125 -12.68954 -12.47391 -12.30264 -12.16028 -11.92423 -11.85881 -11.71806 -11.50813 -11.26469 -11.14295 -10.50280 -10.29484 -9.65451 -9.12075 -4.93343 0.22694 1.02664 1.15241 1.55436 1.65018 1.72008 1.84377 2.01793 2.10990 2.18771 3.38564 3.49131 3.57536 3.59405 3.68389 3.77494 3.87415 3.95968 3.98841 4.06320 4.12825 4.19897 4.22307 4.24098 4.31688 4.32729 4.33982 4.40018 4.48893 4.52874 4.60007 4.62349 4.69149 4.70525 4.83104 4.90230 4.94587 4.97333 5.00848 5.03916 5.06830 5.12704 5.16766 5.19891 5.29204 5.39172 5.54997 5.71502 6.23476 6.39407 6.58365 6.99527 7.04585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.462 3.538 4 O -0.537 6.537 5 C -0.075 4.075 6 H 0.135 0.865 7 C -0.102 4.102 8 C -0.116 4.116 9 C 0.142 3.858 10 H 0.082 0.918 11 N -0.712 5.712 12 C 0.590 3.410 13 O -0.561 6.561 14 C -0.082 4.082 15 C -0.079 4.079 16 C -0.088 4.088 17 C -0.201 4.201 18 C -0.025 4.025 19 O -0.563 6.563 20 Si 0.746 3.254 21 C 0.091 3.909 22 C -0.096 4.096 23 N -0.522 5.522 24 C -0.124 4.124 25 C -0.102 4.102 26 H 0.126 0.874 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.403 0.597 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.400 0.600 39 H -0.308 1.308 40 H -0.294 1.294 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.431 0.569 45 H 0.100 0.900 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.125 2.275 0.632 5.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.307 3.693 4 O -0.426 6.426 5 C -0.094 4.094 6 H 0.153 0.847 7 C -0.140 4.140 8 C -0.154 4.154 9 C 0.038 3.962 10 H 0.100 0.900 11 N -0.364 5.364 12 C 0.378 3.622 13 O -0.440 6.440 14 C -0.194 4.194 15 C -0.087 4.087 16 C -0.145 4.145 17 C -0.206 4.206 18 C -0.135 4.135 19 O -0.373 6.373 20 Si 0.653 3.347 21 C -0.029 4.029 22 C -0.153 4.153 23 N -0.120 5.120 24 C -0.163 4.163 25 C -0.140 4.140 26 H 0.145 0.855 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.239 0.761 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.250 0.750 39 H -0.236 1.236 40 H -0.221 1.221 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.271 0.729 45 H 0.118 0.882 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.683 1.178 -0.219 4.834 hybrid contribution -0.939 0.176 -0.937 1.338 sum -5.622 1.354 -1.156 5.897 Atomic orbital electron populations 1.23510 0.75103 1.05532 1.02428 1.86518 1.24703 1.33297 1.83523 1.24336 0.92951 0.81013 0.71033 1.90663 1.68057 1.37243 1.46655 1.21233 0.85162 0.99951 1.03020 0.84743 1.21433 0.95933 0.93029 1.03587 1.21818 0.94145 1.02310 0.97092 1.21120 0.99202 0.92048 0.83807 0.89977 1.45932 1.26031 1.55153 1.09286 1.17086 0.83594 0.79268 0.82223 1.90808 1.24028 1.44310 1.84878 1.20072 0.93073 1.10078 0.96162 1.20024 0.97189 0.99513 0.91995 1.20358 0.93637 0.98442 1.02032 1.18880 0.98022 1.07736 0.96004 1.23897 0.89718 1.06115 0.93801 1.86474 1.37904 1.78499 1.34381 0.95985 0.76154 0.76078 0.86439 1.20858 0.99175 0.99330 0.83519 1.20693 0.92780 0.98661 1.03166 1.41785 1.18661 1.40625 1.10962 1.21889 0.94790 0.96026 1.03563 1.21411 0.95882 1.01328 0.95331 0.85545 0.92150 0.91895 0.91871 0.90121 0.89797 0.87632 0.76093 0.93177 0.90579 0.91437 0.88319 0.74952 1.23647 1.22134 0.88585 0.89371 0.88174 0.72883 0.88192 0.92812 0.92673 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.69 10.47 -51.48 -0.54 -1.23 16 3 C 0.46 1.08 7.25 71.24 0.52 1.60 16 4 O -0.54 -4.18 15.73 21.98 0.35 -3.83 16 5 C -0.07 0.28 2.63 -11.54 -0.03 0.24 16 6 H 0.13 -1.00 8.14 -2.39 -0.02 -1.02 16 7 C -0.10 0.49 4.32 30.59 0.13 0.62 16 8 C -0.12 0.75 5.61 30.59 0.17 0.92 16 9 C 0.14 -0.19 2.78 44.99 0.13 -0.06 16 10 H 0.08 0.20 7.58 -2.39 -0.02 0.18 16 11 N -0.71 -0.49 4.23 -446.52 -1.89 -2.38 16 12 C 0.59 5.24 7.75 86.44 0.67 5.91 16 13 O -0.56 -9.08 14.46 -4.35 -0.06 -9.15 16 14 C -0.08 -0.69 7.06 40.35 0.28 -0.41 16 15 C -0.08 -0.92 5.86 -19.56 -0.11 -1.03 16 16 C -0.09 -1.20 7.95 71.24 0.57 -0.63 16 17 C -0.20 -1.35 4.56 -20.12 -0.09 -1.44 16 18 C -0.02 -0.03 2.77 71.24 0.20 0.17 16 19 O -0.56 -1.05 11.90 -148.98 -1.77 -2.82 16 20 Si 0.75 1.43 31.21 68.60 2.14 3.58 16 21 C 0.09 0.14 7.13 41.34 0.29 0.44 16 22 C -0.10 0.64 9.92 71.24 0.71 1.34 16 23 N -0.52 -0.52 5.99 -171.93 -1.03 -1.55 16 24 C -0.12 0.21 5.60 30.59 0.17 0.39 16 25 C -0.10 0.26 4.98 30.59 0.15 0.41 16 26 H 0.13 -0.86 8.14 -2.39 -0.02 -0.88 16 27 H 0.06 -0.07 8.13 -2.39 -0.02 -0.09 16 28 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 29 H 0.06 -0.26 6.46 -2.39 -0.02 -0.27 16 30 H 0.08 -0.32 8.10 -2.39 -0.02 -0.34 16 31 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H 0.11 -0.99 8.14 -2.39 -0.02 -1.01 16 33 H 0.40 -1.52 5.99 -92.71 -0.56 -2.08 16 34 H 0.05 0.75 7.54 -2.39 -0.02 0.73 16 35 H 0.08 0.95 6.67 -2.39 -0.02 0.93 16 36 H 0.07 1.10 6.47 -2.39 -0.02 1.08 16 37 H 0.10 -0.52 6.70 -2.39 -0.02 -0.53 16 38 H 0.40 -3.53 8.74 -74.06 -0.65 -4.18 16 39 H -0.31 -2.79 7.11 99.48 0.71 -2.09 16 40 H -0.29 -2.94 6.00 99.48 0.60 -2.34 16 41 H 0.10 -0.77 8.14 -2.38 -0.02 -0.79 16 42 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 43 H 0.10 -0.86 7.35 -2.39 -0.02 -0.88 16 44 H 0.43 -2.53 8.19 -92.71 -0.76 -3.29 16 45 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 46 H 0.05 0.21 8.14 -2.38 -0.02 0.19 16 47 H 0.05 -0.02 7.60 -2.39 -0.02 -0.04 16 48 H 0.08 -0.18 8.11 -2.38 -0.02 -0.20 16 Total: 0.00 -27.90 380.74 1.12 -26.78 By element: Atomic # 1 Polarization: -17.98 SS G_CDS: -1.03 Total: -19.01 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 4.95 Total: 9.61 kcal Atomic # 7 Polarization: -1.01 SS G_CDS: -2.92 Total: -3.93 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -2.03 Total: -17.03 kcal Atomic # 14 Polarization: 1.43 SS G_CDS: 2.14 Total: 3.58 kcal Total: -27.90 1.12 -26.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_12297754.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.069 kcal (2) G-P(sol) polarization free energy of solvation -27.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds