Wall clock time and date at job start Tue Mar 9 2021 13:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 117.00001 * 2 1 4 4 O 1.20826 * 120.00094 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99603 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.47301 * 60.00009 * 5 3 2 7 7 C 1.53001 * 109.46592 * 180.02562 * 5 3 2 8 8 C 1.52998 * 109.47196 * 179.97438 * 7 5 3 9 9 C 1.53007 * 109.46929 * 300.00052 * 8 7 5 10 10 H 1.08997 * 109.46933 * 179.97438 * 9 8 7 11 11 N 1.46503 * 109.46627 * 299.99711 * 9 8 7 12 12 C 1.34776 * 119.99557 * 204.99939 * 11 9 8 13 13 O 1.21619 * 120.00082 * 0.02562 * 12 11 9 14 14 C 1.47307 * 120.00096 * 180.02562 * 12 11 9 15 15 C 1.39820 * 120.13147 * 0.02562 * 14 12 11 16 16 C 1.37579 * 119.96364 * 179.97438 * 15 14 12 17 17 C 1.50704 * 119.88274 * 179.97438 * 16 15 14 18 18 O 1.42897 * 109.46855 * 254.99906 * 17 16 15 19 19 Si 1.86303 * 109.46859 * 14.99421 * 17 16 15 20 20 C 1.39146 * 120.23862 * 359.97438 * 16 15 14 21 21 O 1.35717 * 119.86096 * 179.97438 * 20 16 15 22 22 C 1.42901 * 116.99727 * 180.02562 * 21 20 16 23 23 C 1.38723 * 120.27670 * 0.02562 * 20 16 15 24 24 C 1.38409 * 120.02860 * 359.73982 * 23 20 16 25 25 O 1.35658 * 120.11839 * 180.26974 * 24 23 20 26 26 C 1.42900 * 116.99953 * 0.24117 * 25 24 23 27 27 C 1.53003 * 109.47047 * 59.99633 * 9 8 7 28 28 C 1.52997 * 109.47047 * 299.99832 * 27 9 8 29 29 H 1.09001 * 109.47157 * 299.99890 * 1 2 3 30 30 H 1.09004 * 109.47122 * 60.00023 * 1 2 3 31 31 H 1.09000 * 109.47070 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47495 * 299.99553 * 7 5 3 33 33 H 1.08994 * 109.47783 * 59.99733 * 7 5 3 34 34 H 1.08998 * 109.47383 * 59.99255 * 8 7 5 35 35 H 1.08999 * 109.47724 * 179.97438 * 8 7 5 36 36 H 0.96998 * 120.00340 * 24.99977 * 11 9 8 37 37 H 1.08004 * 120.01648 * 359.97438 * 15 14 12 38 38 H 1.08997 * 109.47304 * 134.99639 * 17 16 15 39 39 H 0.96705 * 114.00268 * 299.99626 * 18 17 16 40 40 H 1.48494 * 109.99812 * 60.00073 * 19 17 16 41 41 H 1.48497 * 109.99651 * 181.32129 * 19 17 16 42 42 H 1.09001 * 109.47067 * 299.99603 * 22 21 20 43 43 H 1.08997 * 109.47228 * 60.00416 * 22 21 20 44 44 H 1.09004 * 109.47157 * 180.02562 * 22 21 20 45 45 H 1.08000 * 119.98819 * 179.97438 * 23 20 16 46 46 H 1.09005 * 109.46901 * 179.97438 * 26 25 24 47 47 H 1.08990 * 109.47262 * 299.99256 * 26 25 24 48 48 H 1.09003 * 109.47222 * 59.99504 * 26 25 24 49 49 H 1.08998 * 109.46912 * 60.00472 * 27 9 8 50 50 H 1.09001 * 109.46424 * 180.02562 * 27 9 8 51 51 H 1.08994 * 109.47300 * 300.00075 * 28 27 9 52 52 H 1.09001 * 109.46642 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9558 0.7808 -0.8908 7 6 4.0002 2.7420 0.0002 8 6 5.5281 2.8221 0.0002 9 6 6.0751 2.1278 1.2492 10 1 7.1636 2.1845 1.2490 11 7 5.5512 2.7914 2.4456 12 6 6.2325 2.7236 3.6066 13 8 7.2823 2.1120 3.6608 14 6 5.7055 3.3903 4.8098 15 6 4.4986 4.0938 4.7507 16 6 4.0094 4.7148 5.8768 17 6 2.7087 5.4730 5.8109 18 8 2.9752 6.8769 5.8118 19 14 1.8009 5.0143 4.2500 20 6 4.7113 4.6453 7.0762 21 8 4.2219 5.2611 8.1822 22 6 4.9924 5.1509 9.3806 23 6 5.9097 3.9500 7.1460 24 6 6.4098 3.3170 6.0213 25 8 7.5788 2.6320 6.0889 26 6 8.2397 2.6002 7.3555 27 6 5.6412 0.6606 1.2484 28 6 4.1133 0.5806 1.2484 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.6102 3.2367 -0.8893 33 1 3.6108 3.2356 0.8905 34 1 5.9179 2.3284 -0.8899 35 1 5.8372 3.8673 0.0003 36 1 4.7141 3.2796 2.4023 37 1 3.9507 4.1497 3.8217 38 1 2.0958 5.2189 6.6757 39 1 3.4469 7.1872 6.5969 40 1 1.5179 3.5567 4.2368 41 1 0.5314 5.7791 4.1574 42 1 5.0945 4.1000 9.6515 43 1 5.9803 5.5820 9.2183 44 1 4.4899 5.6862 10.1862 45 1 6.4508 3.8994 8.0793 46 1 9.1593 2.0210 7.2710 47 1 8.4780 3.6172 7.6666 48 1 7.5860 2.1377 8.0950 49 1 6.0310 0.1670 0.3582 50 1 6.0306 0.1662 2.1384 51 1 3.7236 1.0743 2.1386 52 1 3.8043 -0.4647 1.2474 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_12297780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:07 Heat of formation + Delta-G solvation = -197.496403 kcal Electronic energy + Delta-G solvation = -37332.146405 eV Core-core repulsion = 32457.359741 eV Total energy + Delta-G solvation = -4874.786664 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.181 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.20369 -41.78270 -40.81560 -40.06478 -38.86639 -38.38047 -37.47790 -37.02274 -34.82927 -32.37110 -32.22884 -31.80039 -30.78465 -29.00407 -28.60793 -28.12617 -26.13940 -25.16038 -24.43383 -23.64527 -22.99021 -21.85376 -21.59943 -20.19695 -19.99171 -18.85471 -18.60317 -18.53938 -17.88535 -17.76177 -17.43064 -17.24625 -17.16664 -16.62344 -16.51852 -16.29823 -16.20728 -15.80062 -15.62979 -15.56504 -15.14687 -14.89172 -14.82691 -14.35243 -14.27150 -14.18916 -14.11860 -13.83139 -13.66453 -13.51611 -13.37906 -13.18581 -13.07985 -12.89998 -12.69220 -12.56232 -12.52401 -12.29443 -12.12141 -11.98217 -11.82251 -11.69165 -11.55532 -11.40258 -11.32875 -11.28698 -11.09559 -10.83124 -10.05633 -9.93394 -9.21685 -5.03750 -0.29972 0.04697 1.15386 1.28635 1.51449 1.75229 1.76636 1.87823 2.02946 2.13871 2.20569 2.60364 3.41289 3.48165 3.53723 3.63612 3.71248 3.71581 3.75806 3.89995 4.04214 4.06975 4.13691 4.15395 4.20358 4.20610 4.25236 4.26835 4.28049 4.29008 4.29474 4.32469 4.42792 4.48242 4.51470 4.62793 4.66003 4.68589 4.72168 4.73307 4.84681 4.89191 4.96526 5.08056 5.13382 5.17421 5.21700 5.24430 5.33611 5.38315 5.41911 5.62167 5.96277 6.25245 6.56239 6.59355 6.70397 7.28960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.460 3.540 4 O -0.534 6.534 5 C -0.075 4.075 6 H 0.134 0.866 7 C -0.108 4.108 8 C -0.117 4.117 9 C 0.142 3.858 10 H 0.082 0.918 11 N -0.715 5.715 12 C 0.565 3.435 13 O -0.558 6.558 14 C -0.224 4.224 15 C 0.005 3.995 16 C -0.200 4.200 17 C -0.065 4.065 18 O -0.545 6.545 19 Si 0.786 3.214 20 C 0.206 3.794 21 O -0.318 6.318 22 C 0.013 3.987 23 C -0.305 4.305 24 C 0.217 3.783 25 O -0.301 6.301 26 C 0.010 3.990 27 C -0.123 4.123 28 C -0.105 4.105 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.404 0.596 37 H 0.156 0.844 38 H 0.074 0.926 39 H 0.375 0.625 40 H -0.262 1.262 41 H -0.291 1.291 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.123 0.877 45 H 0.167 0.833 46 H 0.114 0.886 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.097 0.903 50 H 0.053 0.947 51 H 0.057 0.943 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 -0.678 1.683 2.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.304 3.696 4 O -0.423 6.423 5 C -0.094 4.094 6 H 0.152 0.848 7 C -0.146 4.146 8 C -0.154 4.154 9 C 0.038 3.962 10 H 0.100 0.900 11 N -0.369 5.369 12 C 0.353 3.647 13 O -0.438 6.438 14 C -0.229 4.229 15 C -0.014 4.014 16 C -0.201 4.201 17 C -0.173 4.173 18 O -0.352 6.352 19 Si 0.688 3.312 20 C 0.158 3.842 21 O -0.230 6.230 22 C -0.081 4.081 23 C -0.324 4.324 24 C 0.168 3.832 25 O -0.212 6.212 26 C -0.084 4.084 27 C -0.161 4.161 28 C -0.143 4.143 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.242 0.758 37 H 0.173 0.827 38 H 0.091 0.909 39 H 0.224 0.776 40 H -0.187 1.187 41 H -0.218 1.218 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.141 0.859 45 H 0.184 0.816 46 H 0.132 0.868 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.115 0.885 50 H 0.072 0.928 51 H 0.076 0.924 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.811 -1.203 0.706 1.613 hybrid contribution -0.445 0.221 2.431 2.481 sum 0.366 -0.982 3.137 3.307 Atomic orbital electron populations 1.23488 0.75364 1.05397 1.02352 1.86515 1.24479 1.33470 1.83637 1.24424 0.93088 0.80985 0.71102 1.90668 1.68040 1.37158 1.46466 1.21256 0.84913 1.00224 1.03006 0.84793 1.21508 0.96150 0.92882 1.04045 1.21826 0.94018 1.02553 0.97019 1.21083 0.99144 0.91917 0.84020 0.90035 1.46013 1.26349 1.55280 1.09264 1.17944 0.83723 0.79655 0.83338 1.90810 1.23917 1.43850 1.85213 1.19239 0.99262 1.11028 0.93333 1.20797 0.92134 0.91193 0.97228 1.19512 1.00869 1.07788 0.91944 1.25250 0.96622 0.83255 1.12186 1.86689 1.80299 1.20487 1.47707 0.92595 0.79049 0.77273 0.82307 1.18835 0.90262 0.88497 0.86610 1.86037 1.49720 1.69231 1.18000 1.23494 0.97291 1.03628 0.83700 1.21424 1.00605 1.09799 1.00621 1.18953 0.84708 0.87252 0.92337 1.86370 1.32127 1.67044 1.35668 1.23482 0.98197 1.03625 0.83133 1.21876 0.94596 0.96288 1.03385 1.21448 0.96090 1.01229 0.95530 0.92380 0.91862 0.85654 0.89869 0.91330 0.87884 0.89370 0.75769 0.82732 0.90885 0.77594 1.18722 1.21795 0.91410 0.90939 0.85913 0.81607 0.86817 0.90947 0.91119 0.88475 0.92774 0.92404 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.36 -0.97 10.47 -51.40 -0.54 -1.51 16 3 C 0.46 1.41 7.25 71.24 0.52 1.93 16 4 O -0.53 -4.54 15.73 21.96 0.35 -4.19 16 5 C -0.08 0.24 2.63 -11.54 -0.03 0.21 16 6 H 0.13 -0.97 8.14 -2.39 -0.02 -0.99 16 7 C -0.11 0.50 4.32 30.59 0.13 0.63 16 8 C -0.12 0.77 5.61 30.60 0.17 0.95 16 9 C 0.14 -0.22 2.78 44.99 0.13 -0.09 16 10 H 0.08 0.16 7.58 -2.39 -0.02 0.14 16 11 N -0.72 -0.58 4.18 -445.90 -1.86 -2.45 16 12 C 0.56 4.41 7.72 86.63 0.67 5.08 16 13 O -0.56 -8.48 14.81 16.87 0.25 -8.23 16 14 C -0.22 -1.37 5.89 -20.00 -0.12 -1.48 16 15 C 0.00 0.01 8.14 22.50 0.18 0.19 16 16 C -0.20 -0.58 5.27 -19.80 -0.10 -0.68 16 17 C -0.06 -0.19 2.32 71.24 0.17 -0.02 16 18 O -0.55 -2.05 12.65 -148.98 -1.89 -3.94 16 19 Si 0.79 1.81 30.16 68.60 2.07 3.88 16 20 C 0.21 0.41 6.62 22.60 0.15 0.56 16 21 O -0.32 0.15 9.36 -90.39 -0.85 -0.69 16 22 C 0.01 -0.09 9.80 113.37 1.11 1.02 16 23 C -0.31 -0.40 8.01 22.43 0.18 -0.22 16 24 C 0.22 1.34 6.70 22.82 0.15 1.49 16 25 O -0.30 -2.37 8.56 -68.77 -0.59 -2.96 16 26 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 27 C -0.12 0.23 5.60 30.59 0.17 0.40 16 28 C -0.11 0.23 4.98 30.59 0.15 0.39 16 29 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 30 H 0.06 -0.03 8.13 -2.38 -0.02 -0.05 16 31 H 0.13 -0.74 8.14 -2.39 -0.02 -0.76 16 32 H 0.08 -0.35 8.10 -2.39 -0.02 -0.36 16 33 H 0.07 -0.28 6.46 -2.39 -0.02 -0.29 16 34 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 35 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 36 H 0.40 -1.25 4.88 -92.71 -0.45 -1.70 16 37 H 0.16 -0.43 3.43 -2.91 -0.01 -0.44 16 38 H 0.07 0.23 7.82 -2.39 -0.02 0.21 16 39 H 0.38 -0.21 8.58 -74.05 -0.64 -0.84 16 40 H -0.26 -1.21 7.11 99.48 0.71 -0.50 16 41 H -0.29 -2.64 7.11 99.48 0.71 -1.93 16 42 H 0.07 -0.58 7.65 -2.39 -0.02 -0.60 16 43 H 0.07 -0.67 7.65 -2.39 -0.02 -0.69 16 44 H 0.12 -1.28 8.14 -2.39 -0.02 -1.30 16 45 H 0.17 -0.71 4.50 -2.91 -0.01 -0.72 16 46 H 0.11 -0.42 8.14 -2.38 -0.02 -0.44 16 47 H 0.07 -0.38 7.65 -2.39 -0.02 -0.39 16 48 H 0.07 -0.35 7.67 -2.39 -0.02 -0.37 16 49 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 50 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 51 H 0.06 0.00 7.60 -2.39 -0.02 -0.02 16 52 H 0.08 -0.16 8.11 -2.39 -0.02 -0.18 16 Total: 0.00 -24.55 413.23 2.81 -21.74 By element: Atomic # 1 Polarization: -14.21 SS G_CDS: -0.07 Total: -14.29 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 5.94 Total: 12.63 kcal Atomic # 7 Polarization: -0.58 SS G_CDS: -1.86 Total: -2.45 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -3.26 Total: -21.52 kcal Atomic # 14 Polarization: 1.81 SS G_CDS: 2.07 Total: 3.88 kcal Total: -24.55 2.81 -21.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_12297780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.755 kcal (2) G-P(sol) polarization free energy of solvation -24.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds