Wall clock time and date at job start Tue Mar 9 2021 13:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 117.00206 * 2 1 4 4 O 1.20833 * 119.99943 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00083 * 180.02562 * 3 2 1 6 6 H 1.08990 * 109.47207 * 300.00428 * 5 3 2 7 7 C 1.52997 * 109.46811 * 60.00751 * 5 3 2 8 8 C 1.53004 * 109.47009 * 180.02562 * 7 5 3 9 9 C 1.53001 * 109.46814 * 299.99452 * 8 7 5 10 10 H 1.09001 * 109.46718 * 179.97438 * 9 8 7 11 11 N 1.46491 * 109.47590 * 299.99976 * 9 8 7 12 12 C 1.34773 * 120.00216 * 275.00001 * 11 9 8 13 13 O 1.21593 * 119.99903 * 0.02562 * 12 11 9 14 14 C 1.47577 * 120.00014 * 179.97438 * 12 11 9 15 15 C 1.40206 * 119.83693 * 0.29424 * 14 12 11 16 16 C 1.36228 * 120.37754 * 180.32018 * 15 14 12 17 17 C 1.39875 * 119.96706 * 359.68365 * 16 15 14 18 18 C 1.46250 * 133.84708 * 180.02562 * 17 16 15 19 19 C 1.50697 * 126.48503 * 359.94968 * 18 17 16 20 20 O 1.42899 * 109.47313 * 74.99131 * 19 18 17 21 21 Si 1.86298 * 109.47411 * 194.99988 * 19 18 17 22 22 C 1.34454 * 107.03779 * 179.97438 * 18 17 16 23 23 N 1.36563 * 109.98505 * 359.97438 * 22 18 17 24 24 C 1.37834 * 109.85845 * 0.02562 * 23 22 18 25 25 C 1.38650 * 133.37739 * 180.02562 * 24 23 22 26 26 C 1.52997 * 109.46885 * 60.00471 * 9 8 7 27 27 C 1.53001 * 109.46913 * 180.02562 * 5 3 2 28 28 H 1.08995 * 109.47098 * 59.99204 * 1 2 3 29 29 H 1.08992 * 109.46985 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46728 * 299.99651 * 1 2 3 31 31 H 1.08996 * 109.47419 * 299.99478 * 7 5 3 32 32 H 1.08998 * 109.47741 * 59.99979 * 7 5 3 33 33 H 1.08998 * 109.47123 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.47480 * 59.99888 * 8 7 5 35 35 H 0.97001 * 120.00253 * 95.00078 * 11 9 8 36 36 H 1.08002 * 119.80622 * 0.02562 * 15 14 12 37 37 H 1.08000 * 120.01552 * 179.66435 * 16 15 14 38 38 H 1.09002 * 109.46689 * 314.99912 * 19 18 17 39 39 H 0.96708 * 113.99727 * 60.00852 * 20 19 18 40 40 H 1.48500 * 109.99917 * 179.97438 * 21 19 18 41 41 H 1.48498 * 109.99866 * 301.31224 * 21 19 18 42 42 H 1.08000 * 125.01181 * 180.02562 * 22 18 17 43 43 H 0.97003 * 125.07577 * 180.02562 * 23 22 18 44 44 H 1.08002 * 120.16454 * 359.97438 * 25 24 23 45 45 H 1.08998 * 109.47741 * 59.99431 * 26 9 8 46 46 H 1.09005 * 109.47470 * 179.97438 * 26 9 8 47 47 H 1.09002 * 109.47260 * 60.00742 * 27 5 3 48 48 H 1.08995 * 109.47453 * 300.00634 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9565 0.7805 0.8890 7 6 4.1128 0.5816 -1.2503 8 6 5.6408 0.6611 -1.2506 9 6 6.0751 2.1281 -1.2501 10 1 7.1637 2.1847 -1.2499 11 7 5.5514 2.7930 -2.4458 12 6 6.2323 2.7261 -3.6069 13 8 7.2812 2.1135 -3.6622 14 6 5.7043 3.3953 -4.8116 15 6 4.4971 4.1051 -4.7427 16 6 3.9964 4.7216 -5.8495 17 6 4.6912 4.6538 -7.0616 18 6 4.4450 5.1855 -8.4016 19 6 3.2633 6.0150 -8.8334 20 8 3.4081 7.3463 -8.3347 21 14 3.1788 6.0544 -10.6940 22 6 5.4723 4.7938 -9.1757 23 7 6.3555 4.0558 -8.4408 24 6 5.9091 3.9492 -7.1411 25 6 6.4118 3.3250 -6.0097 26 6 5.5287 2.8213 -0.0004 27 6 4.0002 2.7420 0.0002 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.8038 -0.4636 -1.2505 32 1 3.7228 1.0759 -2.1400 33 1 6.0301 0.1676 -2.1411 34 1 6.0306 0.1664 -0.3610 35 1 4.7144 3.2814 -2.4019 36 1 3.9588 4.1593 -3.8080 37 1 3.0632 5.2621 -5.7912 38 1 2.3474 5.5763 -8.4373 39 1 4.2036 7.7989 -8.6469 40 1 2.0171 6.8690 -11.1325 41 1 4.4348 6.6212 -11.2475 42 1 5.5830 5.0290 -10.2239 43 1 7.1749 3.6648 -8.7825 44 1 7.3444 2.7825 -6.0584 45 1 5.9184 2.3267 0.8893 46 1 5.8385 3.8664 0.0003 47 1 3.6109 3.2355 0.8907 48 1 3.6100 3.2367 -0.8892 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_12335838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:17 Heat of formation + Delta-G solvation = -95.105034 kcal Electronic energy + Delta-G solvation = -32108.878556 eV Core-core repulsion = 27709.555726 eV Total energy + Delta-G solvation = -4399.322830 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.48512 -41.91120 -41.05752 -39.17053 -37.96489 -37.56861 -37.44998 -34.94890 -33.27813 -31.95935 -31.79984 -30.73450 -30.16436 -28.57254 -26.50817 -25.31995 -24.40127 -23.73782 -23.63436 -21.94708 -21.61769 -20.82397 -20.21043 -19.47254 -18.66207 -18.48928 -17.81784 -17.76256 -17.40359 -16.99623 -16.89082 -16.45000 -16.16052 -15.91492 -15.64030 -15.46581 -15.18048 -15.03585 -14.85034 -14.80085 -14.72926 -14.46737 -14.23874 -13.91559 -13.87142 -13.69350 -13.26750 -13.15891 -13.08692 -12.92135 -12.66265 -12.50064 -12.22562 -12.19304 -12.05069 -11.84798 -11.77823 -11.62150 -11.40580 -11.17228 -11.07238 -10.79695 -10.45836 -10.12218 -9.37613 -8.80857 -4.83975 -0.32331 0.35514 1.11313 1.38389 1.39649 1.63874 1.72982 1.90724 1.92759 2.04844 2.28343 2.86202 3.47853 3.54813 3.56053 3.63274 3.69185 3.71042 3.85980 3.89913 3.97814 4.05690 4.09643 4.15895 4.27099 4.28867 4.29589 4.34412 4.41323 4.43507 4.47786 4.53616 4.58479 4.64630 4.69299 4.77960 4.81282 4.96484 4.98382 5.06918 5.10346 5.13883 5.19886 5.26229 5.29688 5.37468 5.40569 5.46077 5.55123 5.60306 5.96823 6.46323 6.51644 6.61712 6.66829 7.15156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.462 3.538 4 O -0.538 6.538 5 C -0.075 4.075 6 H 0.134 0.866 7 C -0.103 4.103 8 C -0.123 4.123 9 C 0.140 3.860 10 H 0.082 0.918 11 N -0.708 5.708 12 C 0.563 3.437 13 O -0.577 6.577 14 C -0.136 4.136 15 C -0.110 4.110 16 C -0.084 4.084 17 C -0.080 4.080 18 C -0.225 4.225 19 C -0.051 4.051 20 O -0.554 6.554 21 Si 0.776 3.224 22 C 0.091 3.909 23 N -0.576 5.576 24 C 0.069 3.931 25 C -0.065 4.065 26 C -0.117 4.117 27 C -0.104 4.104 28 H 0.059 0.941 29 H 0.127 0.873 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.407 0.593 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.384 0.616 40 H -0.309 1.309 41 H -0.267 1.267 42 H 0.208 0.792 43 H 0.435 0.565 44 H 0.131 0.869 45 H 0.104 0.896 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.001 -2.760 -1.804 3.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.306 3.694 4 O -0.427 6.427 5 C -0.093 4.093 6 H 0.152 0.848 7 C -0.141 4.141 8 C -0.162 4.162 9 C 0.036 3.964 10 H 0.100 0.900 11 N -0.361 5.361 12 C 0.352 3.648 13 O -0.458 6.458 14 C -0.141 4.141 15 C -0.130 4.130 16 C -0.103 4.103 17 C -0.086 4.086 18 C -0.233 4.233 19 C -0.159 4.159 20 O -0.362 6.362 21 Si 0.680 3.320 22 C -0.038 4.038 23 N -0.179 5.179 24 C -0.038 4.038 25 C -0.086 4.086 26 C -0.154 4.154 27 C -0.142 4.142 28 H 0.078 0.922 29 H 0.145 0.855 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.246 0.754 36 H 0.160 0.840 37 H 0.153 0.847 38 H 0.129 0.871 39 H 0.233 0.767 40 H -0.237 1.237 41 H -0.192 1.192 42 H 0.225 0.775 43 H 0.275 0.725 44 H 0.149 0.851 45 H 0.122 0.878 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.090 -2.631 -2.276 3.480 hybrid contribution 0.175 1.087 0.427 1.181 sum 0.265 -1.545 -1.849 2.424 Atomic orbital electron populations 1.23501 0.75198 1.05499 1.02380 1.86511 1.24616 1.33281 1.83560 1.24372 0.93010 0.80989 0.71007 1.90673 1.68099 1.37306 1.46649 1.21231 0.85057 0.99898 1.03149 0.84831 1.21431 0.95925 1.01340 0.95387 1.21884 0.94746 0.95962 1.03585 1.21113 0.99136 0.92163 0.84007 0.90021 1.46015 1.26328 1.54573 1.09168 1.18297 0.83406 0.79345 0.83788 1.90758 1.24600 1.44819 1.85668 1.19510 0.97632 1.03655 0.93278 1.20838 0.94917 0.97814 0.99439 1.20368 1.00062 0.99097 0.90733 1.19522 0.94788 0.99541 0.94713 1.20753 1.00771 1.09306 0.92431 1.24597 0.97418 0.81607 1.12306 1.86577 1.48904 1.27055 1.73662 0.94137 0.77266 0.89020 0.71625 1.22287 0.89116 0.94060 0.98336 1.41792 1.23088 1.46410 1.06602 1.18124 0.96291 1.02808 0.86599 1.20135 0.99977 0.98848 0.89644 1.21826 0.94069 1.02292 0.97234 1.21456 0.96041 0.93125 1.03569 0.92172 0.85497 0.92031 0.89983 0.92314 0.92490 0.88375 0.75399 0.83996 0.84678 0.87100 0.76738 1.23723 1.19227 0.77531 0.72489 0.85095 0.87770 0.89890 0.90367 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.36 -0.87 10.47 -51.37 -0.54 -1.40 16 3 C 0.46 1.46 7.26 71.24 0.52 1.98 16 4 O -0.54 -4.91 15.73 21.94 0.35 -4.56 16 5 C -0.07 0.23 2.63 -11.54 -0.03 0.20 16 6 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16 7 C -0.10 0.27 4.98 30.59 0.15 0.42 16 8 C -0.12 0.28 5.60 30.60 0.17 0.45 16 9 C 0.14 -0.20 2.78 44.99 0.13 -0.08 16 10 H 0.08 0.15 7.58 -2.39 -0.02 0.14 16 11 N -0.71 -0.47 4.18 -445.68 -1.86 -2.33 16 12 C 0.56 3.92 7.72 86.71 0.67 4.59 16 13 O -0.58 -8.00 15.98 -4.01 -0.06 -8.07 16 14 C -0.14 -0.76 5.87 -20.07 -0.12 -0.88 16 15 C -0.11 -0.27 9.46 22.28 0.21 -0.06 16 16 C -0.08 -0.31 10.03 22.20 0.22 -0.09 16 17 C -0.08 -0.34 6.35 -20.14 -0.13 -0.47 16 18 C -0.23 -0.01 5.57 -18.65 -0.10 -0.12 16 19 C -0.05 0.03 3.06 71.24 0.22 0.25 16 20 O -0.55 -1.71 12.88 -148.98 -1.92 -3.63 16 21 Si 0.78 -3.34 30.82 68.60 2.11 -1.23 16 22 C 0.09 -0.41 10.43 83.09 0.87 0.46 16 23 N -0.58 1.71 6.07 -187.71 -1.14 0.57 16 24 C 0.07 0.23 7.26 38.96 0.28 0.52 16 25 C -0.06 -0.37 9.61 22.63 0.22 -0.15 16 26 C -0.12 0.69 5.61 30.61 0.17 0.86 16 27 C -0.10 0.39 4.33 30.61 0.13 0.52 16 28 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 29 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 30 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 31 H 0.08 -0.22 8.11 -2.39 -0.02 -0.24 16 32 H 0.06 -0.02 7.61 -2.39 -0.02 -0.04 16 33 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 35 H 0.41 -1.04 4.86 -92.71 -0.45 -1.49 16 36 H 0.14 -0.35 6.36 -2.91 -0.02 -0.37 16 37 H 0.14 0.25 8.06 -2.91 -0.02 0.22 16 38 H 0.11 -0.07 7.96 -2.39 -0.02 -0.09 16 39 H 0.38 -1.10 8.70 -74.05 -0.64 -1.75 16 40 H -0.31 -1.44 7.11 99.48 0.71 -0.73 16 41 H -0.27 0.84 7.00 99.48 0.70 1.54 16 42 H 0.21 -2.37 6.27 -2.91 -0.02 -2.39 16 43 H 0.43 -3.73 8.96 -92.71 -0.83 -4.56 16 44 H 0.13 0.75 7.62 -2.91 -0.02 0.73 16 45 H 0.10 -0.94 8.14 -2.39 -0.02 -0.96 16 46 H 0.08 -0.49 8.14 -2.38 -0.02 -0.51 16 47 H 0.08 -0.21 8.10 -2.39 -0.02 -0.23 16 48 H 0.06 -0.15 6.47 -2.39 -0.02 -0.17 16 Total: 0.00 -25.18 391.10 0.84 -24.34 By element: Atomic # 1 Polarization: -12.37 SS G_CDS: -0.87 Total: -13.24 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 4.77 Total: 9.56 kcal Atomic # 7 Polarization: 1.24 SS G_CDS: -3.00 Total: -1.76 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -2.18 Total: -17.67 kcal Atomic # 14 Polarization: -3.34 SS G_CDS: 2.11 Total: -1.23 kcal Total: -25.18 0.84 -24.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_12335838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.766 kcal (2) G-P(sol) polarization free energy of solvation -25.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds