Wall clock time and date at job start Tue Mar 9 2021 13:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46932 * 300.00373 * 5 3 2 7 7 C 1.53002 * 109.47318 * 59.99727 * 5 3 2 8 8 C 1.52992 * 109.47131 * 180.02562 * 7 5 3 9 9 C 1.53002 * 109.47214 * 299.99846 * 8 7 5 10 10 H 1.08996 * 109.47435 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.47333 * 300.00508 * 9 8 7 12 12 C 1.34772 * 119.99933 * 274.99780 * 11 9 8 13 13 O 1.21278 * 119.99972 * 359.97438 * 12 11 9 14 14 C 1.50702 * 120.00136 * 180.02562 * 12 11 9 15 15 N 1.46500 * 109.47166 * 179.97438 * 14 12 11 16 16 C 1.35041 * 125.92613 * 124.71532 * 15 14 12 17 17 C 1.35094 * 107.97519 * 179.83779 * 16 15 14 18 18 C 1.50695 * 126.07614 * 180.19909 * 17 16 15 19 19 O 1.42899 * 109.47311 * 255.26419 * 18 17 16 20 20 Si 1.86299 * 109.47199 * 15.26518 * 18 17 16 21 21 C 1.40849 * 107.84804 * 0.42008 * 17 16 15 22 22 C 1.48415 * 126.03887 * 179.77026 * 21 17 16 23 23 C 1.39324 * 120.11787 * 324.71615 * 22 21 17 24 24 C 1.38027 * 119.87687 * 179.71546 * 23 22 21 25 25 C 1.38321 * 120.11964 * 0.55814 * 24 23 22 26 26 C 1.38324 * 120.23901 * 359.71690 * 25 24 23 27 27 C 1.38023 * 120.12169 * 359.97438 * 26 25 24 28 28 N 1.31618 * 107.92416 * 359.74380 * 21 17 16 29 29 C 1.53005 * 109.46828 * 60.00577 * 9 8 7 30 30 C 1.52992 * 109.47257 * 180.02562 * 5 3 2 31 31 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 32 32 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 34 34 H 1.08996 * 109.46989 * 300.00583 * 7 5 3 35 35 H 1.09002 * 109.46768 * 59.99928 * 7 5 3 36 36 H 1.09005 * 109.47052 * 180.02562 * 8 7 5 37 37 H 1.08993 * 109.47710 * 60.00434 * 8 7 5 38 38 H 0.97001 * 120.00035 * 94.99740 * 11 9 8 39 39 H 1.09002 * 109.47146 * 299.99829 * 14 12 11 40 40 H 1.08997 * 109.46907 * 59.99770 * 14 12 11 41 41 H 1.07997 * 126.01285 * 359.96827 * 16 15 14 42 42 H 1.08998 * 109.47129 * 135.26332 * 18 17 16 43 43 H 0.96709 * 113.99529 * 59.99780 * 19 18 17 44 44 H 1.48507 * 110.00050 * 58.68060 * 20 18 17 45 45 H 1.48502 * 110.00180 * 180.02562 * 20 18 17 46 46 H 1.07992 * 120.06402 * 359.97359 * 23 22 21 47 47 H 1.07994 * 119.94054 * 180.27154 * 24 23 22 48 48 H 1.07999 * 119.88465 * 179.69528 * 25 24 23 49 49 H 1.07999 * 119.93972 * 180.02562 * 26 25 24 50 50 H 1.07995 * 120.05819 * 179.97438 * 27 26 25 51 51 H 1.08998 * 109.47134 * 180.02562 * 29 9 8 52 52 H 1.08999 * 109.47484 * 59.99367 * 29 9 8 53 53 H 1.09004 * 109.47330 * 299.99977 * 30 5 3 54 54 H 1.09005 * 109.47124 * 59.99773 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7809 0.8908 7 6 4.1139 0.5811 -1.2483 8 6 5.6418 0.6607 -1.2473 9 6 6.0761 2.1277 -1.2472 10 1 7.1646 2.1845 -1.2461 11 7 5.5532 2.7920 -2.4437 12 6 6.2351 2.7245 -3.6042 13 8 7.2818 2.1143 -3.6579 14 6 5.6975 3.4082 -4.8349 15 7 6.6150 3.1886 -5.9557 16 6 6.2901 2.6547 -7.1528 17 6 7.4069 2.6234 -7.9123 18 6 7.5049 2.1097 -9.3255 19 8 8.1441 0.8316 -9.3246 20 14 5.7951 1.9483 -10.0475 21 6 8.4646 3.1516 -7.1466 22 6 9.8734 3.3006 -7.5892 23 6 10.4461 2.3494 -8.4308 24 6 11.7548 2.4959 -8.8441 25 6 12.5012 3.5785 -8.4149 26 6 11.9393 4.5228 -7.5746 27 6 10.6295 4.3894 -7.1604 28 7 7.9828 3.4903 -5.9695 29 6 5.5285 2.8216 0.0017 30 6 4.0001 2.7421 0.0011 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 3.8048 -0.4641 -1.2482 35 1 3.7245 1.0750 -2.1385 36 1 6.0319 0.1667 -2.1373 37 1 6.0309 0.1665 -0.3572 38 1 4.7162 3.2803 -2.4006 39 1 4.7183 2.9971 -5.0806 40 1 5.6054 4.4776 -4.6454 41 1 5.3095 2.3147 -7.4513 42 1 8.0885 2.8074 -9.9261 43 1 7.6786 0.1594 -8.8082 44 1 5.1079 3.2646 -10.0250 45 1 5.8779 1.4418 -11.4411 46 1 9.8658 1.5012 -8.7626 47 1 12.1984 1.7615 -9.5000 48 1 13.5264 3.6868 -8.7366 49 1 12.5263 5.3664 -7.2428 50 1 10.1919 5.1271 -6.5040 51 1 5.8375 3.8668 0.0016 52 1 5.9175 2.3273 0.8920 53 1 3.6107 3.2365 -0.8889 54 1 3.6100 3.2360 0.8911 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_12622748.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:59 Heat of formation + Delta-G solvation = -42.891800 kcal Electronic energy + Delta-G solvation = -37849.523806 eV Core-core repulsion = 32947.737822 eV Total energy + Delta-G solvation = -4901.785984 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.188 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.48657 -41.88939 -40.95158 -39.80959 -39.00101 -37.72363 -37.50529 -34.95003 -34.71993 -32.41751 -31.99776 -31.87720 -31.57092 -31.15318 -28.83316 -28.32569 -25.97538 -24.92667 -24.14644 -23.71651 -23.49170 -22.29999 -21.70585 -21.44832 -20.96540 -20.20687 -18.81084 -18.59354 -18.43796 -17.79936 -17.75154 -17.53450 -17.10536 -16.78197 -16.56935 -16.26888 -16.19628 -15.88560 -15.75615 -15.41313 -15.22379 -15.07574 -14.88694 -14.73616 -14.41459 -14.25831 -14.22980 -14.12876 -13.93525 -13.87889 -13.74880 -13.61511 -13.28524 -13.23397 -13.16213 -12.90874 -12.45968 -12.38290 -12.19722 -12.13184 -12.05233 -11.89268 -11.83086 -11.61369 -11.54250 -11.40546 -11.24585 -11.15903 -10.64185 -10.24485 -10.09989 -9.88134 -9.73937 -9.28006 -4.97166 0.06912 0.46825 0.85050 1.12847 1.30754 1.43996 1.53318 1.66557 1.74358 1.79943 2.06245 2.14966 2.89964 3.37307 3.48170 3.56345 3.59965 3.65348 3.70092 3.73971 3.95091 3.97518 4.02232 4.05203 4.12208 4.13225 4.16405 4.19101 4.28944 4.31081 4.34169 4.35148 4.41637 4.43406 4.44081 4.52666 4.62569 4.63997 4.71318 4.79666 4.80992 4.84485 4.97512 5.00187 5.06887 5.09978 5.14638 5.17733 5.26231 5.29500 5.31914 5.39390 5.51216 5.56414 5.61876 5.64513 5.94422 6.05627 6.47730 6.62260 6.68457 6.87713 7.19363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.463 3.537 4 O -0.537 6.537 5 C -0.076 4.076 6 H 0.127 0.873 7 C -0.099 4.099 8 C -0.122 4.122 9 C 0.145 3.855 10 H 0.068 0.932 11 N -0.709 5.709 12 C 0.498 3.502 13 O -0.560 6.560 14 C 0.106 3.894 15 N -0.358 5.358 16 C 0.078 3.922 17 C -0.269 4.269 18 C -0.040 4.040 19 O -0.554 6.554 20 Si 0.802 3.198 21 C 0.107 3.893 22 C -0.039 4.039 23 C -0.112 4.112 24 C -0.131 4.131 25 C -0.118 4.118 26 C -0.132 4.132 27 C -0.112 4.112 28 N -0.295 5.295 29 C -0.117 4.117 30 C -0.101 4.101 31 H 0.063 0.937 32 H 0.126 0.874 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.414 0.586 39 H 0.179 0.821 40 H 0.136 0.864 41 H 0.228 0.772 42 H 0.090 0.910 43 H 0.393 0.607 44 H -0.282 1.282 45 H -0.301 1.301 46 H 0.158 0.842 47 H 0.143 0.857 48 H 0.145 0.855 49 H 0.141 0.859 50 H 0.115 0.885 51 H 0.081 0.919 52 H 0.095 0.905 53 H 0.073 0.927 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.586 -2.579 2.657 8.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.308 3.692 4 O -0.426 6.426 5 C -0.095 4.095 6 H 0.144 0.856 7 C -0.137 4.137 8 C -0.161 4.161 9 C 0.041 3.959 10 H 0.087 0.913 11 N -0.364 5.364 12 C 0.283 3.717 13 O -0.437 6.437 14 C -0.017 4.017 15 N -0.140 5.140 16 C -0.067 4.067 17 C -0.281 4.281 18 C -0.150 4.150 19 O -0.362 6.362 20 Si 0.707 3.293 21 C -0.058 4.058 22 C -0.041 4.041 23 C -0.131 4.131 24 C -0.149 4.149 25 C -0.136 4.136 26 C -0.150 4.150 27 C -0.132 4.132 28 N -0.116 5.116 29 C -0.154 4.154 30 C -0.139 4.139 31 H 0.081 0.919 32 H 0.144 0.856 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.252 0.748 39 H 0.196 0.804 40 H 0.154 0.846 41 H 0.244 0.756 42 H 0.108 0.892 43 H 0.244 0.756 44 H -0.209 1.209 45 H -0.229 1.229 46 H 0.175 0.825 47 H 0.160 0.840 48 H 0.163 0.837 49 H 0.159 0.841 50 H 0.133 0.867 51 H 0.100 0.900 52 H 0.114 0.886 53 H 0.092 0.908 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.085 -1.641 2.951 7.848 hybrid contribution 0.018 0.542 -0.410 0.680 sum -7.067 -1.099 2.541 7.590 Atomic orbital electron populations 1.23502 0.75157 1.05482 1.02427 1.86517 1.24638 1.33338 1.83556 1.24317 0.92905 0.80965 0.71031 1.90673 1.68072 1.37271 1.46625 1.21229 0.85130 0.99962 1.03185 0.85555 1.21409 0.95284 1.01374 0.95605 1.21843 0.95193 0.95865 1.03161 1.20951 0.98475 0.92179 0.84310 0.91333 1.45963 1.26563 1.55022 1.08814 1.20962 0.84433 0.80622 0.85656 1.90825 1.24245 1.43492 1.85132 1.22004 0.92824 1.04712 0.82209 1.48130 1.06247 1.47896 1.11711 1.22895 1.01074 0.97663 0.85066 1.20644 0.92620 1.14666 1.00136 1.24590 1.10335 0.86246 0.93820 1.86331 1.54464 1.20014 1.75376 0.94019 0.74329 0.81716 0.79258 1.20854 0.94066 0.99133 0.91737 1.18086 0.90026 0.96618 0.99384 1.22070 0.96009 0.99329 0.95675 1.21441 0.94085 0.98824 1.00573 1.21597 1.00956 0.94072 0.96962 1.21343 0.94734 1.00351 0.98569 1.21312 0.94932 0.97571 0.99346 1.77686 0.90318 1.24125 1.19490 1.21802 0.94439 1.02099 0.97098 1.21430 0.95544 0.93050 1.03851 0.91863 0.85598 0.92227 0.90143 0.91113 0.92585 0.89379 0.74781 0.80422 0.84635 0.75577 0.89204 0.75647 1.20903 1.22898 0.82518 0.83968 0.83679 0.84119 0.86675 0.90008 0.88647 0.90820 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.11 10.56 113.37 1.20 1.09 16 2 O -0.36 0.18 10.47 -51.46 -0.54 -0.36 16 3 C 0.46 -0.06 7.26 71.24 0.52 0.46 16 4 O -0.54 -3.06 15.73 21.98 0.35 -2.71 16 5 C -0.08 0.47 2.63 -11.54 -0.03 0.44 16 6 H 0.13 -1.09 8.14 -2.38 -0.02 -1.11 16 7 C -0.10 0.68 4.98 30.59 0.15 0.83 16 8 C -0.12 0.60 5.60 30.59 0.17 0.77 16 9 C 0.15 -0.63 2.78 44.99 0.13 -0.50 16 10 H 0.07 0.11 7.58 -2.39 -0.02 0.09 16 11 N -0.71 4.27 4.23 -442.53 -1.87 2.40 16 12 C 0.50 0.01 7.82 87.66 0.69 0.70 16 13 O -0.56 -6.67 15.36 -3.02 -0.05 -6.72 16 14 C 0.11 -0.68 6.99 85.63 0.60 -0.08 16 15 N -0.36 -0.93 3.40 -351.90 -1.20 -2.12 16 16 C 0.08 -0.13 9.96 83.47 0.83 0.70 16 17 C -0.27 -1.13 5.34 -19.95 -0.11 -1.24 16 18 C -0.04 -0.06 2.00 71.23 0.14 0.08 16 19 O -0.55 -0.67 10.10 -148.98 -1.50 -2.17 16 20 Si 0.80 -3.00 30.74 68.60 2.11 -0.89 16 21 C 0.11 1.23 6.74 42.53 0.29 1.52 16 22 C -0.04 -0.49 5.80 -20.04 -0.12 -0.61 16 23 C -0.11 -1.13 8.94 22.48 0.20 -0.93 16 24 C -0.13 -0.94 10.03 22.24 0.22 -0.71 16 25 C -0.12 -0.70 10.04 22.31 0.22 -0.47 16 26 C -0.13 -1.00 10.03 22.24 0.22 -0.78 16 27 C -0.11 -1.29 9.75 22.48 0.22 -1.07 16 28 N -0.29 -3.62 11.63 -48.16 -0.56 -4.18 16 29 C -0.12 0.94 5.61 30.61 0.17 1.11 16 30 C -0.10 0.72 4.33 30.61 0.13 0.85 16 31 H 0.06 -0.23 8.13 -2.39 -0.02 -0.25 16 32 H 0.13 -1.11 8.14 -2.38 -0.02 -1.13 16 33 H 0.06 -0.17 8.13 -2.39 -0.02 -0.19 16 34 H 0.08 -0.50 8.11 -2.39 -0.02 -0.52 16 35 H 0.07 -0.52 7.61 -2.39 -0.02 -0.53 16 36 H 0.06 0.00 8.14 -2.38 -0.02 -0.02 16 37 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 38 H 0.41 -4.78 6.87 -92.71 -0.64 -5.42 16 39 H 0.18 -3.02 8.07 -2.39 -0.02 -3.04 16 40 H 0.14 -1.36 8.14 -2.39 -0.02 -1.38 16 41 H 0.23 -2.93 6.41 -2.91 -0.02 -2.95 16 42 H 0.09 0.49 7.84 -2.39 -0.02 0.47 16 43 H 0.39 -2.60 8.70 -74.05 -0.64 -3.24 16 44 H -0.28 -0.18 7.11 99.48 0.71 0.53 16 45 H -0.30 -1.26 7.11 99.48 0.71 -0.55 16 46 H 0.16 1.41 4.53 -2.91 -0.01 1.40 16 47 H 0.14 0.37 8.06 -2.91 -0.02 0.35 16 48 H 0.15 0.08 8.06 -2.91 -0.02 0.06 16 49 H 0.14 0.41 8.06 -2.91 -0.02 0.39 16 50 H 0.12 1.33 8.06 -2.91 -0.02 1.31 16 51 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 52 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 53 H 0.07 -0.56 6.47 -2.38 -0.02 -0.58 16 54 H 0.07 -0.38 8.10 -2.38 -0.02 -0.40 16 Total: 0.00 -35.79 438.84 2.29 -33.51 By element: Atomic # 1 Polarization: -18.61 SS G_CDS: -0.30 Total: -18.90 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 5.85 Total: 2.16 kcal Atomic # 7 Polarization: -0.28 SS G_CDS: -3.63 Total: -3.91 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -1.74 Total: -11.96 kcal Atomic # 14 Polarization: -3.00 SS G_CDS: 2.11 Total: -0.89 kcal Total: -35.79 2.29 -33.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_12622748.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.386 kcal (2) G-P(sol) polarization free energy of solvation -35.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds