Wall clock time and date at job start Tue Mar 9 2021 13:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99579 * 2 1 4 4 O 1.20819 * 120.00672 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99682 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47152 * 59.99843 * 5 3 2 7 7 C 1.53005 * 109.47304 * 179.97438 * 5 3 2 8 8 C 1.52997 * 109.47452 * 180.02562 * 7 5 3 9 9 C 1.53002 * 109.46817 * 300.00239 * 8 7 5 10 10 H 1.09004 * 109.46733 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.47037 * 299.99555 * 9 8 7 12 12 C 1.34776 * 120.00390 * 275.00000 * 11 9 8 13 13 O 1.21648 * 119.99790 * 0.02562 * 12 11 9 14 14 C 1.47056 * 120.00129 * 179.97438 * 12 11 9 15 15 C 1.35858 * 125.42514 * 179.69643 * 14 12 11 16 16 C 1.41594 * 107.72700 * 179.84813 * 15 14 12 17 17 C 1.40068 * 133.38152 * 180.02562 * 16 15 14 18 18 C 1.36480 * 119.82973 * 180.29547 * 17 16 15 19 19 C 1.38894 * 120.61394 * 0.05138 * 18 17 16 20 20 C 1.50702 * 119.67458 * 179.97438 * 19 18 17 21 21 O 1.42905 * 109.46983 * 120.02120 * 20 19 18 22 22 Si 1.86296 * 109.47174 * 0.02562 * 20 19 18 23 23 C 1.37717 * 120.65214 * 359.97438 * 19 18 17 24 24 C 1.39191 * 119.80476 * 359.97438 * 23 19 18 25 25 N 1.37487 * 133.18175 * 180.02562 * 24 23 19 26 26 C 1.53000 * 109.47233 * 60.00194 * 9 8 7 27 27 C 1.52997 * 109.47060 * 299.99657 * 26 9 8 28 28 H 1.09003 * 109.46952 * 300.00275 * 1 2 3 29 29 H 1.09000 * 109.47246 * 60.00167 * 1 2 3 30 30 H 1.09001 * 109.46940 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46935 * 59.99966 * 7 5 3 32 32 H 1.09001 * 109.46812 * 300.00308 * 7 5 3 33 33 H 1.08993 * 109.47194 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.46695 * 59.99734 * 8 7 5 35 35 H 0.97001 * 119.99395 * 95.00922 * 11 9 8 36 36 H 1.08002 * 126.13676 * 359.97438 * 15 14 12 37 37 H 1.07997 * 120.08783 * 0.34571 * 17 16 15 38 38 H 1.07996 * 119.69150 * 180.02562 * 18 17 16 39 39 H 1.08996 * 109.47124 * 240.01741 * 20 19 18 40 40 H 0.96704 * 113.99691 * 299.99375 * 21 20 19 41 41 H 1.48501 * 110.00380 * 179.97438 * 22 20 19 42 42 H 1.48502 * 110.00203 * 301.32094 * 22 20 19 43 43 H 1.07994 * 120.09581 * 180.02562 * 23 19 18 44 44 H 0.96999 * 125.60888 * 359.97438 * 25 24 23 45 45 H 1.09002 * 109.47398 * 59.99826 * 26 9 8 46 46 H 1.09001 * 109.47194 * 180.02562 * 26 9 8 47 47 H 1.08996 * 109.47853 * 180.02562 * 27 26 9 48 48 H 1.09002 * 109.47153 * 300.00319 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8891 7 6 4.0001 2.7422 -0.0002 8 6 5.5280 2.8223 -0.0002 9 6 6.0750 2.1294 1.2494 10 1 7.1636 2.1861 1.2491 11 7 5.5513 2.7941 2.4452 12 6 6.1718 3.8851 2.9362 13 8 7.1666 4.3181 2.3861 14 6 5.6456 4.5526 4.1362 15 6 6.1845 5.6513 4.7263 16 6 5.3808 5.9776 5.8454 17 6 5.4431 6.9889 6.8125 18 6 4.5023 7.0429 7.7998 19 6 3.4816 6.1027 7.8565 20 6 2.4543 6.1820 8.9562 21 8 1.1551 6.3443 8.3835 22 14 2.8338 7.6364 10.0568 23 6 3.3991 5.0985 6.9176 24 6 4.3462 5.0229 5.9004 25 7 4.5261 4.1609 4.8445 26 6 5.6413 0.6621 1.2501 27 6 4.1134 0.5820 1.2501 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.6100 3.2369 0.8893 32 1 3.6107 3.2357 -0.8907 33 1 5.8370 3.8675 -0.0012 34 1 5.9177 2.3277 -0.8900 35 1 4.7578 2.4489 2.8836 36 1 7.0665 6.1820 4.3991 37 1 6.2330 7.7244 6.7767 38 1 4.5522 7.8239 8.5441 39 1 2.4800 5.2647 9.5443 40 1 1.0593 7.1422 7.8455 41 1 1.8275 7.7262 11.1451 42 1 4.1950 7.4955 10.6334 43 1 2.6014 4.3724 6.9699 44 1 3.9612 3.4012 4.6331 45 1 6.0311 0.1675 0.3603 46 1 6.0306 0.1685 2.1405 47 1 3.8043 -0.4632 1.2511 48 1 3.7237 1.0765 2.1398 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_13158378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:16:18 Heat of formation + Delta-G solvation = -94.882458 kcal Electronic energy + Delta-G solvation = -32030.717404 eV Core-core repulsion = 27631.404226 eV Total energy + Delta-G solvation = -4399.313178 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.75824 -41.92867 -40.94495 -39.29510 -38.76874 -37.58368 -36.89360 -35.07592 -33.30318 -32.03666 -31.87095 -30.76280 -30.41677 -28.65855 -26.97173 -25.12058 -24.32325 -23.78024 -23.26032 -22.08976 -21.82534 -21.39844 -20.29213 -19.72477 -18.68713 -18.43504 -17.87303 -17.79949 -17.57040 -16.94337 -16.77889 -16.62493 -16.23062 -15.88805 -15.70712 -15.54492 -15.19901 -14.98288 -14.91139 -14.77765 -14.69365 -14.52703 -14.35915 -14.12473 -13.92555 -13.61696 -13.35233 -13.29564 -13.12835 -12.98547 -12.60471 -12.53909 -12.31236 -12.07739 -12.03259 -11.89244 -11.68705 -11.65519 -11.45841 -11.38522 -11.24144 -10.98719 -10.44468 -10.27005 -9.35122 -8.85627 -4.94708 -0.39211 0.50507 0.92954 1.06718 1.33867 1.67059 1.67897 1.74003 1.95630 2.01474 2.16724 2.75374 3.40423 3.46575 3.56974 3.59057 3.63640 3.67959 3.71622 3.87613 4.01970 4.02992 4.10371 4.22878 4.23995 4.25244 4.27740 4.30205 4.35459 4.37272 4.43235 4.48449 4.57086 4.60106 4.66494 4.74872 4.86194 4.91145 4.96560 5.02202 5.06603 5.08481 5.16911 5.23664 5.29025 5.32836 5.38458 5.42658 5.51440 5.56194 5.96002 6.21165 6.38112 6.62712 6.77432 6.93448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.461 3.539 4 O -0.542 6.542 5 C -0.075 4.075 6 H 0.135 0.865 7 C -0.098 4.098 8 C -0.125 4.125 9 C 0.141 3.859 10 H 0.087 0.913 11 N -0.708 5.708 12 C 0.586 3.414 13 O -0.556 6.556 14 C 0.008 3.992 15 C -0.117 4.117 16 C -0.134 4.134 17 C -0.057 4.057 18 C -0.148 4.148 19 C -0.088 4.088 20 C -0.072 4.072 21 O -0.556 6.556 22 Si 0.778 3.222 23 C -0.112 4.112 24 C 0.106 3.894 25 N -0.567 5.567 26 C -0.116 4.116 27 C -0.109 4.109 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.129 0.871 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.404 0.596 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.109 0.891 40 H 0.395 0.605 41 H -0.302 1.302 42 H -0.284 1.284 43 H 0.132 0.868 44 H 0.428 0.572 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.017 -3.823 -0.852 4.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.306 3.694 4 O -0.432 6.432 5 C -0.094 4.094 6 H 0.153 0.847 7 C -0.136 4.136 8 C -0.163 4.163 9 C 0.037 3.963 10 H 0.106 0.894 11 N -0.360 5.360 12 C 0.373 3.627 13 O -0.434 6.434 14 C -0.102 4.102 15 C -0.144 4.144 16 C -0.139 4.139 17 C -0.076 4.076 18 C -0.166 4.166 19 C -0.090 4.090 20 C -0.182 4.182 21 O -0.364 6.364 22 Si 0.685 3.315 23 C -0.133 4.133 24 C -0.004 4.004 25 N -0.172 5.172 26 C -0.154 4.154 27 C -0.146 4.146 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.147 0.853 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.241 0.759 36 H 0.174 0.826 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.126 0.874 40 H 0.245 0.755 41 H -0.230 1.230 42 H -0.211 1.211 43 H 0.150 0.850 44 H 0.268 0.732 45 H 0.125 0.875 46 H 0.107 0.893 47 H 0.116 0.884 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.502 -3.707 -0.272 3.751 hybrid contribution -1.005 -0.861 -0.113 1.329 sum -1.507 -4.569 -0.385 4.826 Atomic orbital electron populations 1.23507 0.75236 1.05573 1.02284 1.86508 1.24522 1.32981 1.83529 1.24405 0.93052 0.80991 0.71002 1.90686 1.68203 1.37595 1.46713 1.21236 0.85010 0.99157 1.03959 0.84733 1.21334 0.95960 0.93670 1.02636 1.21903 0.94225 1.01402 0.98815 1.21179 0.99329 0.92683 0.83106 0.89445 1.45973 1.31176 1.28712 1.30137 1.17254 0.82924 0.80401 0.82113 1.90853 1.26584 1.65443 1.60497 1.20091 0.92510 1.00391 0.97191 1.21108 1.01132 0.96715 0.95485 1.18447 0.97556 0.98956 0.98906 1.20650 0.98720 0.96270 0.91915 1.20700 0.95707 0.99988 1.00210 1.20164 0.96929 0.95175 0.96771 1.25194 0.83691 1.10577 0.98770 1.86464 1.28898 1.50239 1.70771 0.93529 0.76059 0.83741 0.78197 1.19981 0.98485 1.00825 0.93961 1.18461 0.98131 0.92547 0.91307 1.41807 1.24678 1.27353 1.23412 1.21836 0.94560 0.93312 1.05697 1.21556 0.96103 1.02148 0.94842 0.92153 0.92338 0.85274 0.92553 0.91952 0.92673 0.88287 0.75867 0.82550 0.83327 0.83509 0.87363 0.75451 1.23003 1.21076 0.84988 0.73185 0.87475 0.89312 0.88425 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.56 113.37 1.20 1.12 16 2 O -0.36 -0.03 10.47 -51.41 -0.54 -0.57 16 3 C 0.46 0.81 7.26 71.24 0.52 1.33 16 4 O -0.54 -4.98 15.73 21.98 0.35 -4.64 16 5 C -0.07 0.36 2.63 -11.54 -0.03 0.33 16 6 H 0.13 -1.16 8.14 -2.39 -0.02 -1.18 16 7 C -0.10 0.16 4.34 30.60 0.13 0.29 16 8 C -0.13 0.36 5.60 30.59 0.17 0.54 16 9 C 0.14 -0.58 2.78 44.99 0.13 -0.46 16 10 H 0.09 -0.09 7.58 -2.39 -0.02 -0.11 16 11 N -0.71 1.79 4.23 -446.15 -1.89 -0.10 16 12 C 0.59 2.70 7.76 86.56 0.67 3.37 16 13 O -0.56 -6.66 16.50 -4.18 -0.07 -6.73 16 14 C 0.01 0.03 6.96 39.91 0.28 0.31 16 15 C -0.12 -0.65 10.53 22.55 0.24 -0.41 16 16 C -0.13 -0.57 6.16 -21.36 -0.13 -0.70 16 17 C -0.06 -0.05 10.06 22.30 0.22 0.18 16 18 C -0.15 0.14 8.59 22.02 0.19 0.33 16 19 C -0.09 -0.01 5.40 -19.83 -0.11 -0.12 16 20 C -0.07 0.08 2.81 71.24 0.20 0.28 16 21 O -0.56 0.16 12.76 -148.98 -1.90 -1.74 16 22 Si 0.78 -1.97 29.75 68.60 2.04 0.07 16 23 C -0.11 -0.16 9.61 22.38 0.22 0.05 16 24 C 0.11 0.31 7.25 39.13 0.28 0.59 16 25 N -0.57 0.09 6.07 -177.19 -1.08 -0.99 16 26 C -0.12 1.15 5.61 30.59 0.17 1.32 16 27 C -0.11 0.97 4.96 30.59 0.15 1.12 16 28 H 0.06 -0.11 8.13 -2.39 -0.02 -0.13 16 29 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 30 H 0.13 -1.06 8.14 -2.39 -0.02 -1.08 16 31 H 0.06 0.07 7.56 -2.39 -0.02 0.05 16 32 H 0.06 0.09 8.10 -2.39 -0.02 0.07 16 33 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H 0.40 -2.79 5.92 -92.71 -0.55 -3.34 16 36 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 37 H 0.15 -0.51 8.06 -2.91 -0.02 -0.53 16 38 H 0.15 -0.78 4.82 -2.91 -0.01 -0.79 16 39 H 0.11 -0.02 7.96 -2.39 -0.02 -0.03 16 40 H 0.40 -3.12 8.70 -74.05 -0.64 -3.77 16 41 H -0.30 -1.56 7.11 99.48 0.71 -0.85 16 42 H -0.28 -0.57 7.11 99.48 0.71 0.14 16 43 H 0.13 -0.04 8.06 -2.91 -0.02 -0.06 16 44 H 0.43 -2.62 8.12 -92.71 -0.75 -3.37 16 45 H 0.11 -1.34 8.14 -2.39 -0.02 -1.36 16 46 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 47 H 0.10 -0.98 8.11 -2.39 -0.02 -1.00 16 48 H 0.06 -0.58 6.51 -2.39 -0.02 -0.59 16 Total: 0.00 -24.58 391.27 0.53 -24.04 By element: Atomic # 1 Polarization: -17.94 SS G_CDS: -0.88 Total: -18.82 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 4.50 Total: 9.47 kcal Atomic # 7 Polarization: 1.88 SS G_CDS: -2.96 Total: -1.09 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -2.16 Total: -13.68 kcal Atomic # 14 Polarization: -1.97 SS G_CDS: 2.04 Total: 0.07 kcal Total: -24.58 0.53 -24.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_13158378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.838 kcal (2) G-P(sol) polarization free energy of solvation -24.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds