Wall clock time and date at job start Tue Mar 9 2021 13:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 116.99942 * 2 1 4 4 O 1.20823 * 120.00570 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99773 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46850 * 299.99015 * 5 3 2 7 7 C 1.52996 * 109.47486 * 59.99591 * 5 3 2 8 8 C 1.53003 * 109.47303 * 179.97438 * 7 5 3 9 9 C 1.53001 * 109.47119 * 300.00082 * 8 7 5 10 10 H 1.09000 * 109.47189 * 179.97438 * 9 8 7 11 11 N 1.46494 * 109.47357 * 300.00197 * 9 8 7 12 12 C 1.34780 * 120.00026 * 275.00188 * 11 9 8 13 13 O 1.21586 * 119.99800 * 359.97438 * 12 11 9 14 14 C 1.47564 * 120.00465 * 179.97438 * 12 11 9 15 15 C 1.40207 * 120.12158 * 179.97438 * 14 12 11 16 16 O 1.35646 * 120.00454 * 0.02562 * 15 14 12 17 17 C 1.38821 * 119.99215 * 179.97438 * 15 14 12 18 18 C 1.37774 * 120.24472 * 359.97438 * 17 15 14 19 19 C 1.39839 * 120.24618 * 0.02562 * 18 17 15 20 20 C 1.47815 * 120.00279 * 180.02562 * 19 18 17 21 21 C 1.35943 * 125.92424 * 359.97438 * 20 19 18 22 22 C 1.40968 * 106.73600 * 180.02562 * 21 20 19 23 23 C 1.34702 * 107.03399 * 0.02562 * 22 21 20 24 24 C 1.50701 * 125.66663 * 180.02562 * 23 22 21 25 25 O 1.42896 * 109.47417 * 64.99772 * 24 23 22 26 26 Si 1.86301 * 109.47149 * 184.99788 * 24 23 22 27 27 O 1.34342 * 108.67055 * 0.26150 * 23 22 21 28 28 C 1.39178 * 120.00015 * 0.27437 * 19 18 17 29 29 C 1.53005 * 109.46938 * 59.99885 * 9 8 7 30 30 C 1.52993 * 109.47416 * 300.00044 * 29 9 8 31 31 H 1.08997 * 109.47707 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47065 * 300.00241 * 1 2 3 33 33 H 1.09000 * 109.47220 * 59.99831 * 1 2 3 34 34 H 1.08994 * 109.46940 * 300.00260 * 7 5 3 35 35 H 1.08999 * 109.46826 * 60.00006 * 7 5 3 36 36 H 1.08995 * 109.47117 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46901 * 59.99504 * 8 7 5 38 38 H 0.97002 * 120.00242 * 94.99355 * 11 9 8 39 39 H 0.96692 * 114.00311 * 269.97916 * 16 15 14 40 40 H 1.08005 * 119.87625 * 179.97438 * 17 15 14 41 41 H 1.08008 * 119.87293 * 180.02562 * 18 17 15 42 42 H 1.07997 * 126.63174 * 359.96573 * 21 20 19 43 43 H 1.08009 * 126.48256 * 180.02562 * 22 21 20 44 44 H 1.09002 * 109.47060 * 304.99798 * 24 23 22 45 45 H 0.96708 * 114.00101 * 59.99427 * 25 24 23 46 46 H 1.48494 * 109.99914 * 58.67711 * 26 24 23 47 47 H 1.48493 * 110.00101 * 179.97438 * 26 24 23 48 48 H 1.07998 * 120.12160 * 179.72873 * 28 19 18 49 49 H 1.08999 * 109.46983 * 60.00042 * 29 9 8 50 50 H 1.09004 * 109.46879 * 179.97438 * 29 9 8 51 51 H 1.08995 * 109.47745 * 180.02562 * 30 29 9 52 52 H 1.09006 * 109.46745 * 300.00217 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9563 0.7807 0.8893 7 6 4.1129 0.5814 -1.2501 8 6 5.6408 0.6621 -1.2509 9 6 6.0741 2.1294 -1.2512 10 1 7.1626 2.1869 -1.2514 11 7 5.5494 2.7934 -2.4470 12 6 6.2299 2.7264 -3.6084 13 8 7.2796 2.1153 -3.6635 14 6 5.7012 3.3947 -4.8131 15 6 6.4074 3.3271 -6.0225 16 8 7.5788 2.6460 -6.0868 17 6 5.9073 3.9563 -7.1543 18 6 4.7173 4.6481 -7.0950 19 6 4.0046 4.7220 -5.8941 20 6 2.7281 5.4652 -5.8367 21 6 2.1385 6.1189 -6.8726 22 6 0.9474 6.6824 -6.3717 23 6 0.8703 6.3486 -5.0690 24 6 -0.2408 6.7352 -4.1272 25 8 -1.4588 6.1181 -4.5485 26 14 0.1798 6.1663 -2.4037 27 8 1.9510 5.6182 -4.7475 28 6 4.4997 4.1002 -4.7516 29 6 5.5274 2.8228 -0.0016 30 6 3.9996 2.7422 -0.0007 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 3.8038 -0.4638 -1.2501 35 1 3.7228 1.0757 -2.1398 36 1 6.0302 0.1677 -2.1409 37 1 6.0311 0.1682 -0.3611 38 1 4.7120 3.2811 -2.4030 39 1 8.3578 3.1839 -5.8902 40 1 6.4530 3.9033 -8.0848 41 1 4.3335 5.1350 -7.9794 42 1 2.5112 6.1932 -7.8835 43 1 0.2319 7.2705 -6.9275 44 1 -0.3615 7.8185 -4.1328 45 1 -1.4241 5.1518 -4.5676 46 1 1.4610 6.7762 -1.9661 47 1 -0.9078 6.5421 -1.4652 48 1 3.9531 4.1598 -3.8221 49 1 5.9178 2.3288 0.8881 50 1 5.8365 3.8681 -0.0016 51 1 3.6101 3.2365 0.8892 52 1 3.6092 3.2362 -0.8906 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_13259648.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:16:25 Heat of formation + Delta-G solvation = -146.561472 kcal Electronic energy + Delta-G solvation = -39390.295049 eV Core-core repulsion = 34288.576287 eV Total energy + Delta-G solvation = -5101.718762 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.165 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.71866 -41.98696 -41.46329 -40.21628 -38.75831 -38.11193 -37.78327 -37.45535 -34.96946 -34.21046 -32.91595 -32.62044 -31.88189 -30.96147 -30.03309 -28.54565 -26.41182 -25.60296 -24.70135 -23.72637 -23.57601 -23.01601 -22.09062 -21.66005 -21.25393 -20.20363 -19.70559 -19.16112 -18.59192 -18.36888 -17.78902 -17.66532 -17.53323 -17.42336 -16.96008 -16.73832 -16.39959 -16.24631 -16.15205 -15.76584 -15.53883 -15.46765 -14.99219 -14.85443 -14.59374 -14.44575 -14.38190 -14.22148 -13.97289 -13.90017 -13.86610 -13.70407 -13.50359 -13.27471 -13.21040 -13.14365 -13.10859 -12.88172 -12.79864 -12.29135 -12.20059 -12.05612 -11.85442 -11.79383 -11.60397 -11.39731 -11.14790 -11.07150 -10.87591 -10.69528 -10.47811 -10.31204 -10.03413 -8.91921 -5.06192 -0.56142 -0.21555 0.75953 1.11200 1.15755 1.38995 1.48971 1.70913 1.76785 1.83776 1.89072 2.08154 2.63182 3.11171 3.23037 3.36422 3.48478 3.50199 3.59950 3.65134 3.70734 3.88387 3.97834 4.00318 4.05802 4.06558 4.17323 4.19591 4.29329 4.31428 4.34092 4.34792 4.40100 4.42101 4.43513 4.61877 4.64242 4.66773 4.73827 4.77274 4.81348 4.86952 4.96724 5.01716 5.06753 5.09938 5.13084 5.15111 5.19895 5.25815 5.29138 5.41383 5.43267 5.50308 5.52247 5.97855 6.42516 6.56271 6.71319 6.73460 7.14460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.461 3.539 4 O -0.532 6.532 5 C -0.075 4.075 6 H 0.133 0.867 7 C -0.103 4.103 8 C -0.124 4.124 9 C 0.142 3.858 10 H 0.083 0.917 11 N -0.713 5.713 12 C 0.558 3.442 13 O -0.554 6.554 14 C -0.179 4.179 15 C 0.165 3.835 16 O -0.493 6.493 17 C -0.146 4.146 18 C -0.045 4.045 19 C -0.042 4.042 20 C 0.022 3.978 21 C -0.189 4.189 22 C -0.179 4.179 23 C -0.058 4.058 24 C -0.019 4.019 25 O -0.540 6.540 26 Si 0.753 3.247 27 O -0.174 6.174 28 C -0.055 4.055 29 C -0.118 4.118 30 C -0.106 4.106 31 H 0.124 0.876 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.404 0.596 39 H 0.410 0.590 40 H 0.165 0.835 41 H 0.165 0.835 42 H 0.176 0.824 43 H 0.163 0.837 44 H 0.139 0.861 45 H 0.398 0.602 46 H -0.285 1.285 47 H -0.282 1.282 48 H 0.142 0.858 49 H 0.104 0.896 50 H 0.081 0.919 51 H 0.079 0.921 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.723 -0.572 -0.090 0.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.281 6.281 3 C 0.306 3.694 4 O -0.421 6.421 5 C -0.094 4.094 6 H 0.150 0.850 7 C -0.141 4.141 8 C -0.162 4.162 9 C 0.038 3.962 10 H 0.101 0.899 11 N -0.366 5.366 12 C 0.346 3.654 13 O -0.433 6.433 14 C -0.183 4.183 15 C 0.119 3.881 16 O -0.306 6.306 17 C -0.164 4.164 18 C -0.063 4.063 19 C -0.042 4.042 20 C -0.027 4.027 21 C -0.207 4.207 22 C -0.199 4.199 23 C -0.108 4.108 24 C -0.130 4.130 25 O -0.348 6.348 26 Si 0.658 3.342 27 O -0.072 6.072 28 C -0.073 4.073 29 C -0.155 4.155 30 C -0.144 4.144 31 H 0.142 0.858 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.242 0.758 39 H 0.271 0.729 40 H 0.182 0.818 41 H 0.183 0.817 42 H 0.193 0.807 43 H 0.180 0.820 44 H 0.156 0.844 45 H 0.249 0.751 46 H -0.212 1.212 47 H -0.208 1.208 48 H 0.159 0.841 49 H 0.122 0.878 50 H 0.100 0.900 51 H 0.097 0.903 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.532 -0.475 0.845 1.105 hybrid contribution -0.433 1.158 -0.403 1.300 sum -0.965 0.683 0.441 1.262 Atomic orbital electron populations 1.23511 0.75129 1.05409 1.02603 1.86511 1.24685 1.33303 1.83590 1.24271 0.92856 0.81085 0.71221 1.90663 1.67944 1.37096 1.46380 1.21212 0.85431 0.99703 1.03034 0.84964 1.21426 0.95855 1.01347 0.95448 1.21878 0.94857 0.95997 1.03473 1.21088 0.99125 0.92064 0.83889 0.89924 1.46071 1.26309 1.54900 1.09326 1.18185 0.83912 0.79859 0.83441 1.90803 1.23873 1.43462 1.85176 1.20313 0.98675 1.04843 0.94448 1.18861 0.88155 0.89878 0.91244 1.84703 1.14923 1.38956 1.92067 1.21589 0.97679 0.97887 0.99259 1.21413 0.92500 0.95470 0.96948 1.17706 0.91498 1.00025 0.94987 1.20489 0.93531 1.03442 0.85270 1.22157 0.96302 1.01381 1.00899 1.21791 0.99528 1.04315 0.94226 1.23076 0.90448 1.00053 0.97219 1.24318 0.81841 1.01426 1.05397 1.86528 1.31039 1.26773 1.90503 0.93414 0.76933 0.91008 0.72838 1.83911 1.29087 1.57860 1.36293 1.21368 0.93544 0.93704 0.98714 1.21823 0.94189 1.02210 0.97305 1.21464 0.96032 0.93273 1.03620 0.85798 0.92036 0.91686 0.90020 0.92318 0.92665 0.88467 0.75765 0.72888 0.81780 0.81714 0.80652 0.81954 0.84433 0.75127 1.21163 1.20809 0.84057 0.87779 0.89999 0.90273 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.56 113.37 1.20 1.13 16 2 O -0.36 -0.42 10.47 -51.41 -0.54 -0.96 16 3 C 0.46 0.79 7.26 71.24 0.52 1.31 16 4 O -0.53 -3.57 15.73 21.97 0.35 -3.23 16 5 C -0.07 0.29 2.63 -11.54 -0.03 0.26 16 6 H 0.13 -1.00 8.14 -2.39 -0.02 -1.02 16 7 C -0.10 0.32 4.98 30.59 0.15 0.47 16 8 C -0.12 0.31 5.60 30.60 0.17 0.48 16 9 C 0.14 -0.30 2.78 44.99 0.13 -0.17 16 10 H 0.08 0.08 7.58 -2.39 -0.02 0.07 16 11 N -0.71 0.08 4.18 -445.67 -1.86 -1.78 16 12 C 0.56 3.16 7.73 86.70 0.67 3.83 16 13 O -0.55 -6.79 14.81 17.01 0.25 -6.54 16 14 C -0.18 -0.61 5.88 -20.04 -0.12 -0.73 16 15 C 0.17 0.48 6.72 22.89 0.15 0.64 16 16 O -0.49 -2.35 11.55 -68.61 -0.79 -3.14 16 17 C -0.15 0.30 9.96 22.30 0.22 0.52 16 18 C -0.05 0.15 9.54 22.55 0.22 0.37 16 19 C -0.04 0.00 5.87 -20.13 -0.12 -0.12 16 20 C 0.02 0.03 7.03 24.27 0.17 0.20 16 21 C -0.19 0.10 10.26 22.41 0.23 0.33 16 22 C -0.18 -0.14 10.78 22.13 0.24 0.10 16 23 C -0.06 -0.08 6.21 24.87 0.15 0.07 16 24 C -0.02 0.01 2.98 71.24 0.21 0.22 16 25 O -0.54 0.29 12.88 -148.98 -1.92 -1.63 16 26 Si 0.75 0.68 32.11 68.60 2.20 2.89 16 27 O -0.17 -0.44 8.79 -6.55 -0.06 -0.49 16 28 C -0.05 -0.04 9.20 22.79 0.21 0.17 16 29 C -0.12 0.75 5.61 30.59 0.17 0.92 16 30 C -0.11 0.46 4.32 30.59 0.13 0.59 16 31 H 0.12 -0.92 8.14 -2.39 -0.02 -0.94 16 32 H 0.06 -0.12 8.13 -2.38 -0.02 -0.14 16 33 H 0.06 -0.17 8.13 -2.39 -0.02 -0.19 16 34 H 0.08 -0.24 8.11 -2.39 -0.02 -0.26 16 35 H 0.06 -0.06 7.60 -2.39 -0.02 -0.08 16 36 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 38 H 0.40 -1.19 4.89 -92.71 -0.45 -1.64 16 39 H 0.41 -0.97 9.06 -74.06 -0.67 -1.64 16 40 H 0.16 -1.03 8.06 -2.91 -0.02 -1.06 16 41 H 0.17 -1.46 6.96 -2.91 -0.02 -1.48 16 42 H 0.18 -1.03 7.24 -2.91 -0.02 -1.05 16 43 H 0.16 -0.25 8.06 -2.91 -0.02 -0.28 16 44 H 0.14 -0.21 7.96 -2.39 -0.02 -0.23 16 45 H 0.40 -3.08 8.70 -74.05 -0.64 -3.72 16 46 H -0.29 -1.84 7.11 99.48 0.71 -1.13 16 47 H -0.28 -1.89 7.11 99.48 0.71 -1.18 16 48 H 0.14 -0.28 6.24 -2.91 -0.02 -0.30 16 49 H 0.10 -0.98 8.14 -2.39 -0.02 -1.00 16 50 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 51 H 0.08 -0.27 8.10 -2.39 -0.02 -0.29 16 52 H 0.06 -0.20 6.46 -2.38 -0.02 -0.22 16 Total: 0.00 -24.65 430.76 1.58 -23.07 By element: Atomic # 1 Polarization: -18.06 SS G_CDS: -0.73 Total: -18.78 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 4.68 Total: 10.60 kcal Atomic # 7 Polarization: 0.08 SS G_CDS: -1.86 Total: -1.78 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -2.71 Total: -15.99 kcal Atomic # 14 Polarization: 0.68 SS G_CDS: 2.20 Total: 2.89 kcal Total: -24.65 1.58 -23.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_13259648.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.491 kcal (2) G-P(sol) polarization free energy of solvation -24.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds