Wall clock time and date at job start Tue Mar 9 2021 13:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34225 * 117.00662 * 2 1 4 4 O 1.20823 * 119.99988 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00130 * 180.02562 * 3 2 1 6 6 H 1.09006 * 109.46858 * 60.00278 * 5 3 2 7 7 C 1.53006 * 109.46870 * 179.97438 * 5 3 2 8 8 C 1.52998 * 109.46756 * 180.02562 * 7 5 3 9 9 C 1.53007 * 109.47232 * 300.00137 * 8 7 5 10 10 H 1.08994 * 109.47006 * 180.02562 * 9 8 7 11 11 N 1.46496 * 109.46902 * 300.00265 * 9 8 7 12 12 C 1.34779 * 119.99821 * 204.99594 * 11 9 8 13 13 O 1.21577 * 120.00070 * 0.02562 * 12 11 9 14 14 C 1.47653 * 120.00310 * 180.02562 * 12 11 9 15 15 C 1.40175 * 119.97239 * 0.02562 * 14 12 11 16 16 C 1.36344 * 120.66876 * 180.02562 * 15 14 12 17 17 C 1.39328 * 120.23850 * 359.96189 * 16 15 14 18 18 N 1.37405 * 133.24937 * 180.02562 * 17 16 15 19 19 C 1.36869 * 109.97590 * 179.97438 * 18 17 16 20 20 C 1.34186 * 109.97350 * 0.02562 * 19 18 17 21 21 C 1.50699 * 126.54634 * 179.97438 * 20 19 18 22 22 O 1.42896 * 109.46890 * 255.04104 * 21 20 19 23 23 Si 1.86300 * 109.46959 * 15.03784 * 21 20 19 24 24 C 1.40901 * 119.64053 * 0.02562 * 17 16 15 25 25 C 1.39188 * 119.97884 * 180.02562 * 14 12 11 26 26 C 1.52998 * 109.46803 * 60.00387 * 9 8 7 27 27 C 1.52994 * 109.47141 * 299.99853 * 5 3 2 28 28 H 1.08994 * 109.47590 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46755 * 300.00867 * 1 2 3 30 30 H 1.08999 * 109.46649 * 59.99591 * 1 2 3 31 31 H 1.08996 * 109.46690 * 60.00621 * 7 5 3 32 32 H 1.08994 * 109.47375 * 300.00234 * 7 5 3 33 33 H 1.09002 * 109.47063 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.47497 * 60.00463 * 8 7 5 35 35 H 0.96996 * 120.00435 * 25.00160 * 11 9 8 36 36 H 1.08001 * 119.66283 * 0.02562 * 15 14 12 37 37 H 1.08007 * 119.88195 * 180.02562 * 16 15 14 38 38 H 0.96993 * 125.01167 * 359.72912 * 18 17 16 39 39 H 1.08007 * 125.01420 * 179.97438 * 19 18 17 40 40 H 1.08998 * 109.46842 * 135.03434 * 21 20 19 41 41 H 0.96703 * 113.99432 * 179.97438 * 22 21 20 42 42 H 1.48502 * 109.99844 * 300.00191 * 23 21 20 43 43 H 1.48499 * 109.99939 * 61.31934 * 23 21 20 44 44 H 1.08002 * 120.29851 * 0.02562 * 25 14 12 45 45 H 1.08998 * 109.47667 * 60.00099 * 26 9 8 46 46 H 1.09004 * 109.46995 * 180.02562 * 26 9 8 47 47 H 1.08998 * 109.46800 * 299.99750 * 27 5 3 48 48 H 1.08993 * 109.46982 * 60.00168 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4036 2.2093 -0.0005 5 6 3.5664 1.2746 -0.0006 6 1 3.9557 0.7807 -0.8909 7 6 4.0003 2.7419 -0.0011 8 6 5.5282 2.8218 -0.0023 9 6 6.0762 2.1282 1.2466 10 1 7.1647 2.1856 1.2459 11 7 5.5534 2.7925 2.4430 12 6 6.2356 2.7253 3.6035 13 8 7.2850 2.1138 3.6572 14 6 5.7084 3.3942 4.8096 15 6 4.4982 4.0987 4.7473 16 6 3.9986 4.7221 5.8521 17 6 4.6879 4.6653 7.0616 18 7 4.4403 5.1801 8.3114 19 6 5.4475 4.8296 9.1693 20 6 6.3641 4.0926 8.5234 21 6 7.6247 3.5119 9.1106 22 8 8.7504 4.2736 8.6695 23 14 7.5268 3.5685 10.9702 24 6 5.9054 3.9602 7.1375 25 6 6.4136 3.3249 6.0077 26 6 5.6423 0.6611 1.2469 27 6 4.1139 0.5808 1.2483 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 3.6110 3.2361 0.8890 32 1 3.6103 3.2358 -0.8910 33 1 5.8374 3.8670 -0.0023 34 1 5.9172 2.3276 -0.8926 35 1 4.7163 3.2806 2.4002 36 1 3.9559 4.1481 3.8145 37 1 3.0647 5.2610 5.7898 38 1 3.6678 5.7160 8.5494 39 1 5.4975 5.1061 10.2122 40 1 7.7349 2.4779 8.7839 41 1 9.5979 3.9559 9.0099 42 1 7.3763 4.9730 11.4283 43 1 6.3788 2.7541 11.4434 44 1 7.3467 2.7836 6.0602 45 1 6.0313 0.1668 0.3567 46 1 6.0324 0.1671 2.1369 47 1 3.7246 1.0748 2.1384 48 1 3.8048 -0.4644 1.2482 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_13287722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:16:29 Heat of formation + Delta-G solvation = -94.518097 kcal Electronic energy + Delta-G solvation = -32171.355934 eV Core-core repulsion = 27772.058556 eV Total energy + Delta-G solvation = -4399.297378 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.59425 -41.92295 -41.06471 -39.17679 -37.88931 -37.55734 -37.42952 -34.95937 -33.47592 -32.00252 -31.83285 -30.83896 -30.23533 -28.58351 -26.48409 -25.42414 -24.47311 -23.73469 -23.58227 -22.06189 -21.67484 -20.71162 -20.20078 -19.18948 -18.73288 -18.58898 -18.33187 -17.81902 -17.63122 -17.31804 -16.91116 -16.43199 -15.97503 -15.72342 -15.66419 -15.28523 -15.10683 -15.09589 -14.89530 -14.83603 -14.79546 -14.27694 -14.23298 -13.93917 -13.83140 -13.68724 -13.59750 -13.26794 -13.14380 -12.93808 -12.77361 -12.66355 -12.19816 -12.10133 -12.04786 -11.93011 -11.85710 -11.62461 -11.40759 -11.17337 -11.06028 -10.92229 -10.20284 -10.13481 -9.45747 -8.94893 -4.92967 -0.23556 0.07646 1.10501 1.32081 1.33686 1.71145 1.72263 1.81346 1.92262 1.97083 2.12760 2.80665 3.45969 3.47689 3.56400 3.60669 3.64190 3.68954 3.73588 3.94927 3.99113 4.05780 4.06482 4.15172 4.18013 4.25908 4.27704 4.30335 4.33844 4.41206 4.42215 4.44080 4.48336 4.63887 4.68035 4.71094 4.80660 4.91003 4.97861 5.06622 5.10141 5.12938 5.16673 5.23293 5.26468 5.30139 5.35286 5.37377 5.45093 5.53783 5.85093 6.39718 6.48205 6.65969 6.95514 7.17474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.462 3.538 4 O -0.537 6.537 5 C -0.075 4.075 6 H 0.134 0.866 7 C -0.103 4.103 8 C -0.116 4.116 9 C 0.140 3.860 10 H 0.079 0.921 11 N -0.708 5.708 12 C 0.564 3.436 13 O -0.579 6.579 14 C -0.177 4.177 15 C -0.065 4.065 16 C -0.128 4.128 17 C 0.110 3.890 18 N -0.574 5.574 19 C 0.057 3.943 20 C -0.178 4.178 21 C -0.059 4.059 22 O -0.569 6.569 23 Si 0.791 3.209 24 C -0.129 4.129 25 C -0.012 4.012 26 C -0.124 4.124 27 C -0.103 4.103 28 H 0.126 0.874 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.408 0.592 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.437 0.563 39 H 0.188 0.812 40 H 0.071 0.929 41 H 0.399 0.601 42 H -0.281 1.281 43 H -0.287 1.287 44 H 0.119 0.881 45 H 0.098 0.902 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.276 -0.678 1.088 2.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.307 3.693 4 O -0.426 6.426 5 C -0.094 4.094 6 H 0.151 0.849 7 C -0.141 4.141 8 C -0.154 4.154 9 C 0.036 3.964 10 H 0.098 0.902 11 N -0.361 5.361 12 C 0.353 3.647 13 O -0.461 6.461 14 C -0.182 4.182 15 C -0.085 4.085 16 C -0.148 4.148 17 C 0.000 4.000 18 N -0.178 5.178 19 C -0.070 4.070 20 C -0.185 4.185 21 C -0.168 4.168 22 O -0.379 6.379 23 Si 0.694 3.306 24 C -0.134 4.134 25 C -0.032 4.032 26 C -0.162 4.162 27 C -0.140 4.140 28 H 0.144 0.856 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.246 0.754 36 H 0.173 0.827 37 H 0.177 0.823 38 H 0.278 0.722 39 H 0.205 0.795 40 H 0.089 0.911 41 H 0.250 0.750 42 H -0.208 1.208 43 H -0.214 1.214 44 H 0.137 0.863 45 H 0.116 0.884 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.826 -0.196 1.535 3.222 hybrid contribution -1.226 0.472 -0.280 1.343 sum -4.052 0.276 1.255 4.251 Atomic orbital electron populations 1.23499 0.75203 1.05478 1.02391 1.86513 1.24617 1.33337 1.83561 1.24354 0.92977 0.80980 0.71005 1.90665 1.68081 1.37255 1.46649 1.21236 0.85071 0.99967 1.03084 0.84879 1.21444 0.95947 0.93054 1.03664 1.21816 0.94150 1.02291 0.97125 1.21104 0.99092 0.92150 0.84066 0.90237 1.45971 1.26283 1.54781 1.09059 1.18302 0.83387 0.79241 0.83780 1.90755 1.24714 1.44930 1.85663 1.19657 0.98753 1.06123 0.93637 1.20863 0.93662 0.94813 0.99145 1.20030 1.01773 1.03934 0.89044 1.18678 0.95962 0.97682 0.87664 1.41691 1.22825 1.46495 1.06743 1.21891 0.89465 0.98986 0.96669 1.20111 0.98640 1.07165 0.92625 1.24412 0.84378 0.95880 1.12090 1.86478 1.17499 1.57457 1.76422 0.93769 0.86474 0.78589 0.71803 1.19192 0.96545 1.03497 0.94126 1.20610 0.97885 0.94537 0.90166 1.21892 0.94821 0.96020 1.03490 1.21435 0.95836 1.01317 0.95461 0.85563 0.92159 0.91988 0.91606 0.90278 0.89817 0.87824 0.75375 0.82699 0.82346 0.72204 0.79518 0.91070 0.75039 1.20804 1.21410 0.86266 0.88404 0.92690 0.92262 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.79 10.47 -51.37 -0.54 -1.33 16 3 C 0.46 1.28 7.26 71.24 0.52 1.80 16 4 O -0.54 -4.52 15.73 21.97 0.35 -4.17 16 5 C -0.07 0.24 2.63 -11.54 -0.03 0.21 16 6 H 0.13 -0.94 8.14 -2.38 -0.02 -0.96 16 7 C -0.10 0.43 4.32 30.60 0.13 0.56 16 8 C -0.12 0.68 5.61 30.60 0.17 0.85 16 9 C 0.14 -0.11 2.78 44.99 0.13 0.01 16 10 H 0.08 0.24 7.57 -2.39 -0.02 0.22 16 11 N -0.71 -0.83 4.18 -445.59 -1.86 -2.69 16 12 C 0.56 4.92 7.73 86.73 0.67 5.59 16 13 O -0.58 -9.56 15.99 -3.96 -0.06 -9.63 16 14 C -0.18 -1.36 5.87 -20.09 -0.12 -1.47 16 15 C -0.07 -0.09 9.46 22.30 0.21 0.12 16 16 C -0.13 -0.10 10.00 22.09 0.22 0.12 16 17 C 0.11 0.54 7.27 39.18 0.28 0.83 16 18 N -0.57 -0.38 6.05 -187.48 -1.13 -1.52 16 19 C 0.06 0.18 10.43 82.98 0.87 1.05 16 20 C -0.18 -1.36 5.61 -18.61 -0.10 -1.46 16 21 C -0.06 -0.19 3.05 71.24 0.22 0.03 16 22 O -0.57 -2.47 12.86 -148.98 -1.92 -4.38 16 23 Si 0.79 -1.83 30.80 68.60 2.11 0.28 16 24 C -0.13 -1.27 6.34 -20.21 -0.13 -1.40 16 25 C -0.01 -0.14 9.64 22.74 0.22 0.08 16 26 C -0.12 0.19 5.60 30.61 0.17 0.36 16 27 C -0.10 0.25 4.98 30.61 0.15 0.40 16 28 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 29 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 30 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 31 H 0.07 -0.22 6.46 -2.39 -0.02 -0.23 16 32 H 0.08 -0.26 8.10 -2.39 -0.02 -0.27 16 33 H 0.08 -0.50 8.14 -2.39 -0.02 -0.51 16 34 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 35 H 0.41 -1.24 4.87 -92.71 -0.45 -1.69 16 36 H 0.16 -0.78 6.36 -2.91 -0.02 -0.80 16 37 H 0.16 -0.89 8.06 -2.91 -0.02 -0.92 16 38 H 0.44 -2.87 8.96 -92.71 -0.83 -3.71 16 39 H 0.19 -0.26 6.30 -2.91 -0.02 -0.28 16 40 H 0.07 0.15 7.96 -2.39 -0.02 0.14 16 41 H 0.40 -2.56 8.74 -74.06 -0.65 -3.21 16 42 H -0.28 -0.62 7.04 99.48 0.70 0.08 16 43 H -0.29 -0.79 7.11 99.48 0.71 -0.08 16 44 H 0.12 1.65 7.64 -2.91 -0.02 1.63 16 45 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 46 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.06 -0.02 7.61 -2.39 -0.02 -0.04 16 48 H 0.08 -0.19 8.11 -2.39 -0.02 -0.21 16 Total: 0.00 -28.57 391.25 0.85 -27.73 By element: Atomic # 1 Polarization: -12.24 SS G_CDS: -0.87 Total: -13.11 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 4.77 Total: 8.83 kcal Atomic # 7 Polarization: -1.21 SS G_CDS: -3.00 Total: -4.21 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -2.17 Total: -19.51 kcal Atomic # 14 Polarization: -1.83 SS G_CDS: 2.11 Total: 0.28 kcal Total: -28.57 0.85 -27.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_13287722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.791 kcal (2) G-P(sol) polarization free energy of solvation -28.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds